rna4264, rna4264 (mRNA) Nannochloropsis gaditana

Overview
Namerna4264
Unique Namerna4264
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002463.1:115124..116614 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100668g6.3082.mrna
Orig protein idgnl|cribi|Naga_100668g6.3082
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:115124..116614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100668g6gene4106Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4264rna4264-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26419.1cds4254Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4264 ID=rna4264|Name=rna4264|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGCCAATTTCTACGAACATACCTCATTTAATACGTCAAATTCACATAGA
TACAGGATTTTCCATAAGAGCTAAAGCCATTCAACTCGTACACACTTTTA
GTATCGAAGTTGGCGAGGACATTGGGGACCTCTGCTCGTCCTCGCGAGCA
CAATTAAGAAGGCTTATGTGGATGAAGGTGGCAGCTCATAAGGTGGGAGT
CTCCCAATCGACTTGCGCCTACCTGTACACTTCTCAGTCTCCTATGGTCG
AGGCCAAAACTTATTTGTCGGAGCCGATACGGAAGCTGAGGCTTTCAGGT
ACGAAGTTTGACTGA
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protein sequence of rna4264

>rna4264-protein ID=rna4264-protein|Name=rna4264|organism=Nannochloropsis gaditana|type=polypeptide|length=319bp
MPASPLPPSSRRGRVSPAAGSSVRRQEFGVPEERLYGEAWEEGRSEGGGG
GGGWEGHSSSHGSDSGGLHGEGQHYQSGWRDDTALPPPLPLSLPPSFSPL
PPSASHRTVLSPGILRVNMEERRRNNLPGGMHGSSHSSSSLSSSTGVLER
PSALPPFLPHASPFAPLSSSSLTVPAPSLPSEQSWPSLGEGIRREGKGGG
GGGGGGGQGGGRTKTSGLAPPCANLLLVVFFSISDKEGDGARRRWRRRRR
WREGGQVGVFECCRFPTGTSRVGGTPLPGGWRGGGRRTRREEEEGGGDVL
VRYADGVGEVKEVREAGKG
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mRNA from alignment at CM002463.1:115124..116614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4264 ID=rna4264|Name=rna4264|organism=Nannochloropsis gaditana|type=mRNA|length=1491bp|location=Sequence derived from alignment at CM002463.1:115124..116614+ (Nannochloropsis gaditana)
TAGGCCTTCACGACTGGTTTAAGGACGGTTGCACCTCCAATTGCGGTTTA
TGGCCGGGAAAGTCCTTTTGTCCAATCGTCCTTACTCGGTGTTACCTCCC
TTACCCCCCCTGTGGGGGGTCCTCGAtttgagagagggaagagggttgCT
AAATATTTGAAGACAGAAGGAGCACACGGAGAtaaaaaatggaagaagga
caagaaaggcGGTCCCAAAAAGAAAGTACCGTGTACAGTTGGCGACGGGa
atcgggaggggagggaggacgagggcgggggcgcggggggggggacctCC
CGGCTTCCATACGATGCCAGCATCGCCGTTGCCACCCTCGAGCCGAAGAG
GCAGGGTTTCTCCCGCTGCAGGGAGCTCTGTAAGGTAAAATGAGAGGGCt
tcaaggaagggagggcaacaGAAACCTTGCATGAGAAAATTTCGGCGTTT
TTTGGTGCCCGCCTATCTCGTCATGTTTTTGATGAGCCATGTCCACATAT
ATGACAGGCGACAGGAATTCGGGGTGCCCGAGGAAAGGCTGTACGGagag
gcgtgggaggaaggaaggagcgaaggaggtgggggaggaggaggctggga
agGCCACAGCTCGTCACATGGAAGCGACAGCGGGGGCCTTCACGGTGAAG
GGCAGCATTATCAGGTTTGACATGGACCAAAACCCCTTTAATGGCATAAT
TAAGTCCATGCTGACATTTGAGACTCATGGTGTTGCACTTACACgcgatt
tttttcctccagtCCGGCTGGCGCGACGacaccgcccttcctccccccct
ccctctctcccttcctccctccttctctcctctgcccccctcaGCTTCCC
ACCGGACTGTACTTTCTCCGGGTATACTACGAGTGAAtatggaggagaga
agacggAATAATTTGCCCGGTGGCATGCATGGGAGTAgtcacagcagcag
cagcctcaGTAGCAGTACCGGTGTTCTTGAGAGGCcttctgcccttcctc
ccttcctcccgcacgcCTCACCGTTCGCGCcgctctcatcctcttcgttg
ACggttcctgccccctccttgccctcggAGCAGTCTTGGCCGTCTTTGGG
GGAAGGAAtccggagagagggaaaagggggaggagggggaggaggggggg
gaggacagggaggagggaggacgaaaacgAGCGGTCTTGCCCCACCCTgc
gccaacctcctcctcgtcgtatTCTTCAGCATTTCcgataaggagggaga
cggcgcgaggaggcgatggaggaggaggcggaggtggagggagggaggac
aggtcGGTGTTTTTGAGTGCTGCCGATTCCCGACAGGGACCTCCCGAGTG
GGAGGGACGCCGCTCCCAGGggggtggcgaggggggggaaggaggacgag
gagggaggaggaggagggtgggggggatgTCCTTGTACGATATGCTGATG
GCGTCGGAGAGGtcaaggaggtgagggaggcaggaaaagga
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Coding sequence (CDS) from alignment at CM002463.1:115124..116614+

>rna4264 ID=rna4264|Name=rna4264|organism=Nannochloropsis gaditana|type=CDS|length=2871bp|location=Sequence derived from alignment at CM002463.1:115124..116614+ (Nannochloropsis gaditana)
ATGCCAGCATCGCCGTTGCCACCCTCGAGCCGAAGAGGCAGGGTTTCTCC
CGCTGCAGGGAGCTCTGTAAGGCGACAGGAATTCGGGGTGCCCGAGGAAA
GGCTGTACGGagaggcgtgggaggaaggaaggagcgaaggaggtggggga
ggaggaggctgggaagGCCACAGCTCGTCACATGGAAGCGACAGCGGGGG
CCTTCACGGTGAAGGGCAGCATTATCAGtCCGGCTGGCGCGACGacaccg
cccttcctccccccctccctctctcccttcctccctccttctctcctctg
cccccctcaGCTTCCCACCGGACTGTACTTTCTCCGGGTATACTACGAGT
GAAtatggaggagagaagacggAATAATTTGCCCGGTGGCATGCATGGGA
GTAgtcacagcagcagcagcctcaGTAGCAGTACCGGTGTTCTTGAGAGG
CcttctgcccttcctcccttcctcccgcacgcCTCACCGTTCGCGCcgct
ctcatcctcttcgttgACggttcctgccccctccttgccctcggAGCAGT
CTTGGCCGTCTTTGGGGGAAGGAAtccggagagagggaaaagggggagga
gggggaggaggggggggaggacagggaggagggaggacgaaaacgAGCGG
TCTTGCCCCACCCTgcgccaacctcctcctcgtcgtatTCTTCAGCATTT
Ccgataaggagggagacggcgcgaggaggcgatggaggaggaggcggagg
tggagggagggaggacaggtcGGTGTTTTTGAGTGCTGCCGATTCCCGAC
AGGGACCTCCCGAGTGGGAGGGACGCCGCTCCCAGGggggtggcgagggg
ggggaaggaggacgaggagggaggaggaggagggtgggggggatgTCCTT
GTACGATATGCTGATGGCGTCGGAGAGGtcaaggaggtgagggaggcagg
aaaaggaATGCCAGCATCGCCGTTGCCACCCTCGAGCCGAAGAGGCAGGG
TTTCTCCCGCTGCAGGGAGCTCTGTAAGGCGACAGGAATTCGGGGTGCCC
GAGGAAAGGCTGTACGGagaggcgtgggaggaaggaaggagcgaaggagg
tgggggaggaggaggctgggaagGCCACAGCTCGTCACATGGAAGCGACA
GCGGGGGCCTTCACGGTGAAGGGCAGCATTATCAGtCCGGCTGGCGCGAC
Gacaccgcccttcctccccccctccctctctcccttcctccctccttctc
tcctctgcccccctcaGCTTCCCACCGGACTGTACTTTCTCCGGGTATAC
TACGAGTGAAtatggaggagagaagacggAATAATTTGCCCGGTGGCATG
CATGGGAGTAgtcacagcagcagcagcctcaGTAGCAGTACCGGTGTTCT
TGAGAGGCcttctgcccttcctcccttcctcccgcacgcCTCACCGTTCG
CGCcgctctcatcctcttcgttgACggttcctgccccctccttgccctcg
gAGCAGTCTTGGCCGTCTTTGGGGGAAGGAAtccggagagagggaaaagg
gggaggagggggaggaggggggggaggacagggaggagggaggacgaaaa
cgAGCGGTCTTGCCCCACCCTgcgccaacctcctcctcgtcgtatTCTTC
AGCATTTCcgataaggagggagacggcgcgaggaggcgatggaggaggag
gcggaggtggagggagggaggacaggtcGGTGTTTTTGAGTGCTGCCGAT
TCCCGACAGGGACCTCCCGAGTGGGAGGGACGCCGCTCCCAGGggggtgg
cgaggggggggaaggaggacgaggagggaggaggaggagggtggggggga
tgTCCTTGTACGATATGCTGATGGCGTCGGAGAGGtcaaggaggtgaggg
aggcaggaaaaggaATGCCAGCATCGCCGTTGCCACCCTCGAGCCGAAGA
GGCAGGGTTTCTCCCGCTGCAGGGAGCTCTGTAAGGCGACAGGAATTCGG
GGTGCCCGAGGAAAGGCTGTACGGagaggcgtgggaggaaggaaggagcg
aaggaggtgggggaggaggaggctgggaagGCCACAGCTCGTCACATGGA
AGCGACAGCGGGGGCCTTCACGGTGAAGGGCAGCATTATCAGtCCGGCTG
GCGCGACGacaccgcccttcctccccccctccctctctcccttcctccct
ccttctctcctctgcccccctcaGCTTCCCACCGGACTGTACTTTCTCCG
GGTATACTACGAGTGAAtatggaggagagaagacggAATAATTTGCCCGG
TGGCATGCATGGGAGTAgtcacagcagcagcagcctcaGTAGCAGTACCG
GTGTTCTTGAGAGGCcttctgcccttcctcccttcctcccgcacgcCTCA
CCGTTCGCGCcgctctcatcctcttcgttgACggttcctgccccctcctt
gccctcggAGCAGTCTTGGCCGTCTTTGGGGGAAGGAAtccggagagagg
gaaaagggggaggagggggaggaggggggggaggacagggaggagggagg
acgaaaacgAGCGGTCTTGCCCCACCCTgcgccaacctcctcctcgtcgt
atTCTTCAGCATTTCcgataaggagggagacggcgcgaggaggcgatgga
ggaggaggcggaggtggagggagggaggacaggtcGGTGTTTTTGAGTGC
TGCCGATTCCCGACAGGGACCTCCCGAGTGGGAGGGACGCCGCTCCCAGG
ggggtggcgaggggggggaaggaggacgaggagggaggaggaggagggtg
ggggggatgTCCTTGTACGATATGCTGATGGCGTCGGAGAGGtcaaggag
gtgagggaggcaggaaaagga
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Synonyms
Publications