EWM26419.1, cds4254 (CDS) Nannochloropsis gaditana

Overview
NameEWM26419.1
Unique Namecds4254
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:115437..115507 +
Alignment locationCM002463.1:115631..115787 +
Alignment locationCM002463.1:115886..116614 +

Link to JBrowse

Properties
Property NameValue
End range.
End range116614
Protein idEWM26419.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100668g6.3082.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:115437..115507 +
CM002463.1supercontigCM002463.1:115631..115787 +
CM002463.1supercontigCM002463.1:115886..116614 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM26419.1 vs. NCBI_GenBank
Match: gi|585108457|gb|EWM26419.1| (hypothetical protein Naga_100668g6, partial [Nannochloropsis gaditana])

HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0 
Query:    1 MPASPLPPSSRRGRVSPAAGSSVRRQEFGVPEERLYGEAWEEGRSEGGGGGGGWEGHSSSHGSDSGGLHGEGQHYQSGWRDDTALPPPLPLSLPPSFSPLPPSASHRTVLSPGILRVNMEERRRNNLPGGMHGSSHSSSSLSSSTGVLERPSALPPFLPHASPFAPLSSSSLTVPAPSLPSEQSWPSLGEGIRREGKGGGGGGGGGGQGGGRTKTSGLAPPCANLLLVVFFSISDKEGDGARRRWRRRRRWREGGQVGVFECCRFPTGTSRVGGTPLPGGWRGGGRRTRREEEEGGGDVLVRYADGVGEVKEVREAGKG 319
            MPASPLPPSSRRGRVSPAAGSSVRRQEFGVPEERLYGEAWEEGRSEGGGGGGGWEGHSSSHGSDSGGLHGEGQHYQSGWRDDTALPPPLPLSLPPSFSPLPPSASHRTVLSPGILRVNMEERRRNNLPGGMHGSSHSSSSLSSSTGVLERPSALPPFLPHASPFAPLSSSSLTVPAPSLPSEQSWPSLGEGIRREGKGGGGGGGGGGQGGGRTKTSGLAPPCANLLLVVFFSISDKEGDGARRRWRRRRRWREGGQVGVFECCRFPTGTSRVGGTPLPGGWRGGGRRTRREEEEGGGDVLVRYADGVGEVKEVREAGKG
Sbjct:    1 MPASPLPPSSRRGRVSPAAGSSVRRQEFGVPEERLYGEAWEEGRSEGGGGGGGWEGHSSSHGSDSGGLHGEGQHYQSGWRDDTALPPPLPLSLPPSFSPLPPSASHRTVLSPGILRVNMEERRRNNLPGGMHGSSHSSSSLSSSTGVLERPSALPPFLPHASPFAPLSSSSLTVPAPSLPSEQSWPSLGEGIRREGKGGGGGGGGGGQGGGRTKTSGLAPPCANLLLVVFFSISDKEGDGARRRWRRRRRWREGGQVGVFECCRFPTGTSRVGGTPLPGGWRGGGRRTRREEEEGGGDVLVRYADGVGEVKEVREAGKG 319
The following BLAST results are available for this feature:
BLAST of EWM26419.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108457|gb|EWM26419.1|0.000e+0100.00hypothetical protein Naga_100668g6, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4264rna4264Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications