rna4259, rna4259 (mRNA) Nannochloropsis gaditana

Overview
Namerna4259
Unique Namerna4259
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length396
Alignment locationCM002463.1:109708..110555 -

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Properties
Property NameValue
Productprotein transport protein sec23
Orig transcript idgnl|cribi|Naga_100668g1.3084.mrna
Orig protein idgnl|cribi|Naga_100668g1.3084
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:109708..110555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100668g1gene4101Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4259rna4259-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26421.1cds4249Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4259 ID=rna4259|Name=rna4259|organism=Nannochloropsis gaditana|type=mRNA|length=396bp
ATGGGATATTGTGGACCGCCCGTCTTCCTCCTTGTCGTGGACACGTGCTT
GGACGACGCCGAGCTCGAGCACTTGAAGGATTCCTTGCAACAGGTGCTCC
AGCTGCTCCCAGAGACTGCCTTGGTGGGTCTCATCACCTTCGGAACGCAC
GTGATGGTCCATGAGCTGGACTCCACAGATTGCGCCCGCTCCTACGTGTT
TCGGGGTAGCAAGGAGTACACCCCCCAGCGCGTGCAAGACCTCCTAAACA
TCGCTCCGCCCATGCGCGGGCAAGCGCCTGGGATGGGACAGCCAGGTAAG
GGAAGAGGAGGGGGGGAACGAAGGGAGGGAGGGGGAGAAGGATGCCTGTG
GGCAACGGGACAAGGGTGGCGGAGACGAGTGGAAGAGAGCGGATGA
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protein sequence of rna4259

>rna4259-protein ID=rna4259-protein|Name=rna4259|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVV
PVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPF
CMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG
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mRNA from alignment at CM002463.1:109708..110555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4259 ID=rna4259|Name=rna4259|organism=Nannochloropsis gaditana|type=mRNA|length=848bp|location=Sequence derived from alignment at CM002463.1:109708..110555- (Nannochloropsis gaditana)
ATGGACCCGTACGCAGCGGGAATGCAAGGTGGTGGCTATTACATGCCGCA
AGAAGACACAAGCCCTTTAGCTCTGGAAGAGAAGGACGGCTTGCGCATGT
CCTGGGGCGTCTGGCCATCCTCTCGGATTGAGGTGACTCGCATTGTGGTA
CCCGTGGCAGGACTGTAAGTAACATTTGCTTCTTTATGTCAATGCTTGAG
ACAGTTTTATGGGTGGAGCGCGGAAAAGTACGAAGCATCCGTCCACATCC
ATCCTTCCCTCCGTCTTCCATAGATACACACCATTACGACGCATCGAGAC
AATGCCTGCGCCCTTGGAATACGATCCGATCCGTTGCAATGGCTGCGGCG
GTGTGCTTAACCCTTATTGGTAAGCCTGGGTGTTTGAGAATGGAAGAAGG
AGGGACTTGGAGCGCGAGAGGGCATCAAAGAGTCATGGCGGGCACGTCGT
TTCCCCCCCTTCCCAACTTCACGCGCACACACGCACCATCGCACTCACAA
ACACGACCCTTACAGCTCTGTCGATTTCAGAAGCAAGGTCTGGACGTGCC
CATTCTGCATGAACCGGTGGGTAGTGGTTTCGGAGGGATTAGGAGGGAAG
GGAGCGACCGAGGTCGGGCAGGAGGATAGTGTCTGACAGGCTAGGATCTG
GCATGCTCCACAACAGGAATCACTTTCCCCCCCACTATGCCGAGAACATT
TCCGAGCAAAATCTGCCGGTGGAGCTTTTCCAGCAGTACACCACGGTGGA
GTATGAACTCCAGGTGCCCGTCGCGGGTGAGGAGGGAGGGAGGGTTCCGA
GAGAACGTGGGGGAAGGGAGCAATACGGTGTAGAGGAATGGAGGATAA
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Coding sequence (CDS) from alignment at CM002463.1:109708..110555-

>rna4259 ID=rna4259|Name=rna4259|organism=Nannochloropsis gaditana|type=CDS|length=2115bp|location=Sequence derived from alignment at CM002463.1:109708..110555- (Nannochloropsis gaditana)
AGGAATGGAGGATAAGAATCACTTTCCCCCCCACTATGCCGAGAACATTT
CCGAGCAAAATCTGCCGGTGGAGCTTTTCCAGCAGTACACCACGGTGGAG
TATGAACTCCAGCTCTGTCGATTTCAGAAGCAAGGTCTGGACGTGCCCAT
TCTGCATGAACCGATACACACCATTACGACGCATCGAGACAATGCCTGCG
CCCTTGGAATACGATCCGATCCGTTGCAATGGCTGCGGCGGTGTGCTTAA
CCCTTATTGATGGACCCGTACGCAGCGGGAATGCAAGGTGGTGGCTATTA
CATGCCGCAAGAAGACACAAGCCCTTTAGCTCTGGAAGAGAAGGACGGCT
TGCGCATGTCCTGGGGCGTCTGGCCATCCTCTCGGATTGAGGTGACTCGC
ATTGTGGTACCCGTGGCAGGACTAGGAATGGAGGATAAGAATCACTTTCC
CCCCCACTATGCCGAGAACATTTCCGAGCAAAATCTGCCGGTGGAGCTTT
TCCAGCAGTACACCACGGTGGAGTATGAACTCCAGCTCTGTCGATTTCAG
AAGCAAGGTCTGGACGTGCCCATTCTGCATGAACCGATACACACCATTAC
GACGCATCGAGACAATGCCTGCGCCCTTGGAATACGATCCGATCCGTTGC
AATGGCTGCGGCGGTGTGCTTAACCCTTATTGATGGACCCGTACGCAGCG
GGAATGCAAGGTGGTGGCTATTACATGCCGCAAGAAGACACAAGCCCTTT
AGCTCTGGAAGAGAAGGACGGCTTGCGCATGTCCTGGGGCGTCTGGCCAT
CCTCTCGGATTGAGGTGACTCGCATTGTGGTACCCGTGGCAGGACTAGGA
ATGGAGGATAAGAATCACTTTCCCCCCCACTATGCCGAGAACATTTCCGA
GCAAAATCTGCCGGTGGAGCTTTTCCAGCAGTACACCACGGTGGAGTATG
AACTCCAGCTCTGTCGATTTCAGAAGCAAGGTCTGGACGTGCCCATTCTG
CATGAACCGATACACACCATTACGACGCATCGAGACAATGCCTGCGCCCT
TGGAATACGATCCGATCCGTTGCAATGGCTGCGGCGGTGTGCTTAACCCT
TATTGATGGACCCGTACGCAGCGGGAATGCAAGGTGGTGGCTATTACATG
CCGCAAGAAGACACAAGCCCTTTAGCTCTGGAAGAGAAGGACGGCTTGCG
CATGTCCTGGGGCGTCTGGCCATCCTCTCGGATTGAGGTGACTCGCATTG
TGGTACCCGTGGCAGGACTAGGAATGGAGGATAAGAATCACTTTCCCCCC
CACTATGCCGAGAACATTTCCGAGCAAAATCTGCCGGTGGAGCTTTTCCA
GCAGTACACCACGGTGGAGTATGAACTCCAGCTCTGTCGATTTCAGAAGC
AAGGTCTGGACGTGCCCATTCTGCATGAACCGATACACACCATTACGACG
CATCGAGACAATGCCTGCGCCCTTGGAATACGATCCGATCCGTTGCAATG
GCTGCGGCGGTGTGCTTAACCCTTATTGATGGACCCGTACGCAGCGGGAA
TGCAAGGTGGTGGCTATTACATGCCGCAAGAAGACACAAGCCCTTTAGCT
CTGGAAGAGAAGGACGGCTTGCGCATGTCCTGGGGCGTCTGGCCATCCTC
TCGGATTGAGGTGACTCGCATTGTGGTACCCGTGGCAGGACTAGGAATGG
AGGATAAGAATCACTTTCCCCCCCACTATGCCGAGAACATTTCCGAGCAA
AATCTGCCGGTGGAGCTTTTCCAGCAGTACACCACGGTGGAGTATGAACT
CCAGCTCTGTCGATTTCAGAAGCAAGGTCTGGACGTGCCCATTCTGCATG
AACCGATACACACCATTACGACGCATCGAGACAATGCCTGCGCCCTTGGA
ATACGATCCGATCCGTTGCAATGGCTGCGGCGGTGTGCTTAACCCTTATT
GATGGACCCGTACGCAGCGGGAATGCAAGGTGGTGGCTATTACATGCCGC
AAGAAGACACAAGCCCTTTAGCTCTGGAAGAGAAGGACGGCTTGCGCATG
TCCTGGGGCGTCTGGCCATCCTCTCGGATTGAGGTGACTCGCATTGTGGT
ACCCGTGGCAGGACT
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Synonyms
Publications