EWM26421.1, cds4249 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|585108459|gb|EWM26421.1| (protein transport protein sec23 [Nannochloropsis gaditana]) HSP 1 Score: 294.278 bits (752), Expect = 5.752e-101 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query: 1 MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG 140
MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG
Sbjct: 1 MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG 140
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|676378321|ref|XP_009032439.1| (hypothetical protein AURANDRAFT_19426 [Aureococcus anophagefferens] >gi|323456932|gb|EGB12798.1| hypothetical protein AURANDRAFT_19426 [Aureococcus anophagefferens]) HSP 1 Score: 188.348 bits (477), Expect = 3.093e-53 Identity = 83/121 (68.60%), Postives = 98/121 (80.99%), Query Frame = 0
Query: 20 TSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG 140
+S A EE+DG+R+SW VWPSSR+E TRIV+P+ LYTPL+ I P PL YDPIRCNGCG +LNPYC VD+R+K+WTCPFC+ RNHFPPHYAENI+E NLP EL Q+TTVEYELQ G
Sbjct: 4 SSIQAQEERDGVRLSWNVWPSSRLEATRIVIPIGALYTPLKPIGN-PPPLIYDPIRCNGCGALLNPYCQVDYRTKLWTCPFCLGRNHFPPHYAENITETNLPAELIPQFTTVEYELQARGA 123
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|299470215|emb|CBN79519.1| (Vesicle coat complex COPII, subunit SEC23 [Ectocarpus siliculosus]) HSP 1 Score: 183.341 bits (464), Expect = 2.372e-51 Identity = 81/113 (71.68%), Postives = 89/113 (78.76%), Query Frame = 0
Query: 23 LALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYEL 135
L EE+D +R SW VWPSSR+E TRIVVPV LYTP++ P PL YDPIRCNGCG +LNPY VDF SK+WTCPFCM RNHFPPHYAENISE NLP EL Q+TTVEYEL
Sbjct: 7 LGAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLAYDPIRCNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENISESNLPYELIPQFTTVEYEL 119
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|635372379|emb|CCI39600.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 172.17 bits (435), Expect = 3.834e-47 Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0
Query: 1 MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ 136
D YA GG +P ++ +E KDG+R SW WP +++E TR VVPV LY PL+ IE +P LEYDP+ C C +LNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL QYTT+EYE Q
Sbjct: 89 FDQYAQQQAGGYQNVPAQEWDFHEMESKDGIRFSWNSWPCTKLEQTRSVVPVGCLYQPLKPIEGIPPALEYDPVHCKSCAAILNPFCQVDFVSKIWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYERQ 224
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|673040953|ref|XP_008874437.1| (hypothetical protein H310_09985 [Aphanomyces invadans] >gi|574470179|gb|ETV97191.1| hypothetical protein H310_09985 [Aphanomyces invadans]) HSP 1 Score: 170.244 bits (430), Expect = 1.877e-46 Identity = 73/118 (61.86%), Postives = 88/118 (74.58%), Query Frame = 0
Query: 24 ALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYEL-QRNGG 140
ALE KDG+R SW WPS+ +E TR VVP+ +Y PL+ IE MPA +EYDP+ C C +LNP+ VDF SK+W CPFC+ RNHFPPHYAE+ISEQNLP EL +TT+EYEL QR G
Sbjct: 122 ALEAKDGIRFSWNNWPSTPLEQTRAVVPMGCIYQPLKPIEGMPAAVEYDPVHCKSCAAILNPFAHVDFLSKLWVCPFCITRNHFPPHYAEHISEQNLPAELIPSFTTLEYELPQRQAG 239
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|953485936|emb|CEG50114.1| (protein transport sec23 sec24-like protein [Plasmopara halstedii]) HSP 1 Score: 167.162 bits (422), Expect = 2.367e-45 Identity = 77/135 (57.04%), Postives = 95/135 (70.37%), Query Frame = 0
Query: 9 QGGGYY--MPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
Q GGY M ++ A+E KDG+R SW WP +++E TR V+P LY PL+ I+ MP +EYDPI C C VLNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL QYTT+EYELQ R G
Sbjct: 84 QQGGYQPGMQPQEWDFHAMEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPFCQVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 218
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|695407754|ref|XP_009524464.1| (vesicle coat complex COPII subunit SEC23 [Phytophthora sojae] >gi|348681931|gb|EGZ21747.1| vesicle coat complex COPII subunit SEC23 [Phytophthora sojae]) HSP 1 Score: 166.777 bits (421), Expect = 2.458e-45 Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 0
Query: 25 LEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
+E KDG+R SW WP +++E TR V+P LY PL+ I+ MP +EYDPI C C VLNPYC VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL QYTT+EYELQ R G
Sbjct: 1 MEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPYCQVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 117
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|567957781|gb|ETK83379.1| (hypothetical protein L915_11429 [Phytophthora parasitica] >gi|567986453|gb|ETL36777.1| hypothetical protein L916_11334 [Phytophthora parasitica] >gi|570947837|gb|ETP13094.1| hypothetical protein F441_11673 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 167.162 bits (422), Expect = 2.511e-45 Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 0
Query: 24 ALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
A+E KDG+R SW WP +++E TR V+P LY PL+ I+ MP +EYDPI C C VLNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL QYTT+EYELQ R G
Sbjct: 97 AMEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPFCKVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 214
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|570324014|gb|ETO71962.1| (hypothetical protein F444_11823 [Phytophthora parasitica P1976]) HSP 1 Score: 166.777 bits (421), Expect = 2.771e-45 Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 0
Query: 24 ALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
A+E KDG+R SW WP +++E TR V+P LY PL+ I+ MP +EYDPI C C VLNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL QYTT+EYELQ R G
Sbjct: 97 AMEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPFCQVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 214
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|675198093|ref|XP_008907931.1| (hypothetical protein PPTG_12936 [Phytophthora parasitica INRA-310] >gi|568092149|gb|ETN06963.1| hypothetical protein PPTG_12936 [Phytophthora parasitica INRA-310]) HSP 1 Score: 166.777 bits (421), Expect = 2.778e-45 Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 0
Query: 24 ALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
A+E KDG+R SW WP +++E TR V+P LY PL+ I+ MP +EYDPI C C VLNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL QYTT+EYELQ R G
Sbjct: 98 AMEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPFCQVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 215 The following BLAST results are available for this feature:
BLAST of EWM26421.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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