EWM26421.1, cds4249 (CDS) Nannochloropsis gaditana

Overview
NameEWM26421.1
Unique Namecds4249
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:110392..110555 -
Alignment locationCM002463.1:110187..110282 -
Alignment locationCM002463.1:109990..110040 -
Alignment locationCM002463.1:109793..109889 -
Alignment locationCM002463.1:109708..109722 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26421.1
Productprotein transport protein sec23
Orig transcript idgnl|cribi|Naga_100668g1.3084.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:110392..110555 -
CM002463.1supercontigCM002463.1:110187..110282 -
CM002463.1supercontigCM002463.1:109990..110040 -
CM002463.1supercontigCM002463.1:109793..109889 -
CM002463.1supercontigCM002463.1:109708..109722 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0006886intracellular protein transport
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0030127COPII vesicle coat
Vocabulary: INTERPRO
TermDefinition
IPR006895Znf_Sec23_Sec24
Homology
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|585108459|gb|EWM26421.1| (protein transport protein sec23 [Nannochloropsis gaditana])

HSP 1 Score: 294.278 bits (752), Expect = 5.752e-101
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query:    1 MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG 140
            MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG
Sbjct:    1 MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG 140          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|676378321|ref|XP_009032439.1| (hypothetical protein AURANDRAFT_19426 [Aureococcus anophagefferens] >gi|323456932|gb|EGB12798.1| hypothetical protein AURANDRAFT_19426 [Aureococcus anophagefferens])

HSP 1 Score: 188.348 bits (477), Expect = 3.093e-53
Identity = 83/121 (68.60%), Postives = 98/121 (80.99%), Query Frame = 0
Query:   20 TSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQRNGG 140
            +S  A EE+DG+R+SW VWPSSR+E TRIV+P+  LYTPL+ I   P PL YDPIRCNGCG +LNPYC VD+R+K+WTCPFC+ RNHFPPHYAENI+E NLP EL  Q+TTVEYELQ  G 
Sbjct:    4 SSIQAQEERDGVRLSWNVWPSSRLEATRIVIPIGALYTPLKPIGN-PPPLIYDPIRCNGCGALLNPYCQVDYRTKLWTCPFCLGRNHFPPHYAENITETNLPAELIPQFTTVEYELQARGA 123          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|299470215|emb|CBN79519.1| (Vesicle coat complex COPII, subunit SEC23 [Ectocarpus siliculosus])

HSP 1 Score: 183.341 bits (464), Expect = 2.372e-51
Identity = 81/113 (71.68%), Postives = 89/113 (78.76%), Query Frame = 0
Query:   23 LALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYEL 135
            L  EE+D +R SW VWPSSR+E TRIVVPV  LYTP++     P PL YDPIRCNGCG +LNPY  VDF SK+WTCPFCM RNHFPPHYAENISE NLP EL  Q+TTVEYEL
Sbjct:    7 LGAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLAYDPIRCNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENISESNLPYELIPQFTTVEYEL 119          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|635372379|emb|CCI39600.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 172.17 bits (435), Expect = 3.834e-47
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0
Query:    1 MDPYAAGMQGGGYYMPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ 136
             D YA    GG   +P ++     +E KDG+R SW  WP +++E TR VVPV  LY PL+ IE +P  LEYDP+ C  C  +LNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL  QYTT+EYE Q
Sbjct:   89 FDQYAQQQAGGYQNVPAQEWDFHEMESKDGIRFSWNSWPCTKLEQTRSVVPVGCLYQPLKPIEGIPPALEYDPVHCKSCAAILNPFCQVDFVSKIWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYERQ 224          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|673040953|ref|XP_008874437.1| (hypothetical protein H310_09985 [Aphanomyces invadans] >gi|574470179|gb|ETV97191.1| hypothetical protein H310_09985 [Aphanomyces invadans])

HSP 1 Score: 170.244 bits (430), Expect = 1.877e-46
Identity = 73/118 (61.86%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   24 ALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYEL-QRNGG 140
            ALE KDG+R SW  WPS+ +E TR VVP+  +Y PL+ IE MPA +EYDP+ C  C  +LNP+  VDF SK+W CPFC+ RNHFPPHYAE+ISEQNLP EL   +TT+EYEL QR  G
Sbjct:  122 ALEAKDGIRFSWNNWPSTPLEQTRAVVPMGCIYQPLKPIEGMPAAVEYDPVHCKSCAAILNPFAHVDFLSKLWVCPFCITRNHFPPHYAEHISEQNLPAELIPSFTTLEYELPQRQAG 239          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|953485936|emb|CEG50114.1| (protein transport sec23 sec24-like protein [Plasmopara halstedii])

HSP 1 Score: 167.162 bits (422), Expect = 2.367e-45
Identity = 77/135 (57.04%), Postives = 95/135 (70.37%), Query Frame = 0
Query:    9 QGGGYY--MPQEDTSPLALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
            Q GGY   M  ++    A+E KDG+R SW  WP +++E TR V+P   LY PL+ I+ MP  +EYDPI C  C  VLNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL  QYTT+EYELQ R  G
Sbjct:   84 QQGGYQPGMQPQEWDFHAMEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPFCQVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 218          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|695407754|ref|XP_009524464.1| (vesicle coat complex COPII subunit SEC23 [Phytophthora sojae] >gi|348681931|gb|EGZ21747.1| vesicle coat complex COPII subunit SEC23 [Phytophthora sojae])

HSP 1 Score: 166.777 bits (421), Expect = 2.458e-45
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 0
Query:   25 LEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
            +E KDG+R SW  WP +++E TR V+P   LY PL+ I+ MP  +EYDPI C  C  VLNPYC VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL  QYTT+EYELQ R  G
Sbjct:    1 MEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPYCQVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 117          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|567957781|gb|ETK83379.1| (hypothetical protein L915_11429 [Phytophthora parasitica] >gi|567986453|gb|ETL36777.1| hypothetical protein L916_11334 [Phytophthora parasitica] >gi|570947837|gb|ETP13094.1| hypothetical protein F441_11673 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 167.162 bits (422), Expect = 2.511e-45
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   24 ALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
            A+E KDG+R SW  WP +++E TR V+P   LY PL+ I+ MP  +EYDPI C  C  VLNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL  QYTT+EYELQ R  G
Sbjct:   97 AMEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPFCKVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 214          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|570324014|gb|ETO71962.1| (hypothetical protein F444_11823 [Phytophthora parasitica P1976])

HSP 1 Score: 166.777 bits (421), Expect = 2.771e-45
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   24 ALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
            A+E KDG+R SW  WP +++E TR V+P   LY PL+ I+ MP  +EYDPI C  C  VLNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL  QYTT+EYELQ R  G
Sbjct:   97 AMEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPFCQVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 214          
BLAST of EWM26421.1 vs. NCBI_GenBank
Match: gi|675198093|ref|XP_008907931.1| (hypothetical protein PPTG_12936 [Phytophthora parasitica INRA-310] >gi|568092149|gb|ETN06963.1| hypothetical protein PPTG_12936 [Phytophthora parasitica INRA-310])

HSP 1 Score: 166.777 bits (421), Expect = 2.778e-45
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   24 ALEEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNGCGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENISEQNLPVELFQQYTTVEYELQ-RNGG 140
            A+E KDG+R SW  WP +++E TR V+P   LY PL+ I+ MP  +EYDPI C  C  VLNP+C VDF SK+W CPFC+ RNHFPPHYAENI+++NLP EL  QYTT+EYELQ R  G
Sbjct:   98 AMEAKDGVRFSWNSWPCTKLEQTRCVMPTGCLYQPLKPIDGMPPAVEYDPIHCKACAAVLNPFCQVDFVSKLWVCPFCVTRNHFPPHYAENITQENLPAELIPQYTTLEYELQNRQAG 215          
The following BLAST results are available for this feature:
BLAST of EWM26421.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108459|gb|EWM26421.1|5.752e-101100.00protein transport protein sec23 [Nannochloropsis g... [more]
gi|676378321|ref|XP_009032439.1|3.093e-5368.60hypothetical protein AURANDRAFT_19426 [Aureococcus... [more]
gi|299470215|emb|CBN79519.1|2.372e-5171.68Vesicle coat complex COPII, subunit SEC23 [Ectocar... [more]
gi|635372379|emb|CCI39600.1|3.834e-4755.15unnamed protein product [Albugo candida][more]
gi|673040953|ref|XP_008874437.1|1.877e-4661.86hypothetical protein H310_09985 [Aphanomyces invad... [more]
gi|953485936|emb|CEG50114.1|2.367e-4557.04protein transport sec23 sec24-like protein [Plasmo... [more]
gi|695407754|ref|XP_009524464.1|2.458e-4561.54vesicle coat complex COPII subunit SEC23 [Phytopht... [more]
gi|567957781|gb|ETK83379.1|2.511e-4561.02hypothetical protein L915_11429 [Phytophthora para... [more]
gi|570324014|gb|ETO71962.1|2.771e-4561.02hypothetical protein F444_11823 [Phytophthora para... [more]
gi|675198093|ref|XP_008907931.1|2.778e-4561.02hypothetical protein PPTG_12936 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4259rna4259Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications