rna4258, rna4258 (mRNA) Nannochloropsis gaditana

Overview
Namerna4258
Unique Namerna4258
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1455
Alignment locationCM002463.1:108671..109522 -

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Properties
Property NameValue
Productprotein transport protein sec23a
Orig transcript idgnl|cribi|Naga_102251g1.6273.mrna
Orig protein idgnl|cribi|Naga_102251g1.6273
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:108671..109522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102251g1gene4100Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4258rna4258-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26425.1cds4248Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4258 ID=rna4258|Name=rna4258|organism=Nannochloropsis gaditana|type=mRNA|length=1455bp
ATGCTCTTTGCCGGCGGCCCGCCAACTGTGGGGCCCGGGACGGTAGTGGG
CCGACCCAAGACGGAAGACATTCGCTCCCACACCGACCTTGCCAAAGGCA
CTGCTTCCCACTACAAAGCCGCTGTCAAGCATTACGCCTCTCTGGCTGAA
AGGGCGGTGGCGGCTTCTCACGTCATCGACATCTTCGCCTGCTCCCTGGA
CCAGGTGGGAATGATGGAGATGAAGGTCTGCGTGGAGAAAACGGGGGGCC
TGATGGTCCTGGCTGACACCTTCTCTCAGTCCGTCTTCAAAGAGTCTCTC
CTCCGGGTATTTAAACGGCTTCCCGCCGATATCCCCAAGGACGGAGGCCA
CCTGCAAATGGGCTTCGCCGCCTCCCTCGAGGTCTTGACCTCGCGGGAAT
TCAAGGTCGCGGGTGCCATTGGCCCCTGTTCCTCTCTGAGGAAAGTGGCG
CCGAATGTAGCGGAGACAGCGATAGGGGAAGGAGGGACGAATGCATGGAG
CATGGGCGGGATCGATCCAGCCGTTACTATTGCCGTGTATTTCGAGGTCA
CCAACGCAGCCAACAACCCGCTGCCTCCCTCCAAACGCCGCTTCATCCAG
TTTATTACCCAATACCAACACGCCTCTGGCCGTTTCCGTTTGCGAACCAC
GACTTATTCCGGAGCCTGGCACAACGACTCTGTAGACATGGGCCCGGTCG
CTCGCTCCTTCGACCAAGAGGCAGCCTGCGTGTTGATGACGCGCATTGCG
GTGCAACGGACCGAATCTGACGAGGAAGGTACCGTCCACGACGTCCTCCG
CTGGGTTGATCGCTCCCTGATCAAGCTTTCGTCCAAATTCGGCAGCTACC
GGAAGGATGACCCCACGTCGTTCGCCTTCCCCCAGGAGTTTGTGCTGTAT
CCGCAATTCATGTTCCACCTCCGGAGATCCCAGTTTCTGCAACTCTTCAA
CTCTTCGCCGGACGAGTCGAGCTACTATCGCACGATCCTCATCCGTGAGA
ATGTAACCAATTCGTTGGTTATGATCCAGCCCTCGCTCCTCTCCTACAGC
TTTTCAGCGCCGCCTCAACCTGTCATGCTCGACGCGACCAGCATTCGTCC
CGACTGTATCCTCCTCCTCGATACCTTTTTCCACGTGGTGGTTTTCCACG
GAGAAACAGTCGCAGCTTGGCGGGCTGCCGGCTATCAAAACAGTGAGGAG
CACGTCAACTTCAAGAATCTGCTAGATTCTCCTCAGCTCGATGCTCAGAT
GACAATGACCAGCCGATTTCCGGTTCCACGTTTTATTGTCTGCGATCAGC
ATAAGTCGCAGGCGCGTTTCCTCATGGCAAAGCTAAACCCATCCATCACG
CATCACACGGGAGAAGTAGGCATGGGCCAAGCCATGTTGACGGACGACGT
CTCATTGCGCGTCTTTATGGAGCACCTCATGAAGCTGGCTGTGCAGACGC
CATAG
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protein sequence of rna4258

>rna4258-protein ID=rna4258-protein|Name=rna4258|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MGYCGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTH
VMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGK
GRGGGERREGGGEGCLWATGQGWRRRVEESG
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mRNA from alignment at CM002463.1:108671..109522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4258 ID=rna4258|Name=rna4258|organism=Nannochloropsis gaditana|type=mRNA|length=852bp|location=Sequence derived from alignment at CM002463.1:108671..109522- (Nannochloropsis gaditana)
ATGGGATATTGTGGTGAGAGGCCTCTCCAGGTCATCCGGACTCTTTCCTG
CCCATCTCTTTGACCCTCCGTCTTGCAGGACCGCCCGTCTTCCTCCTTGT
CGTGGACACGTGCTTGGACGACGCCGAGCTCGAGCACTTGAAGGATTCCT
TGCAACAGGTACGTGCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTCCCCTGCTGCTCACACGCTCTCTCTGCTAC
ACTTACAGGTGCTCCAGCTGCTCCCAGAGACTGCCTTGGTGGGTCTCATC
ACCTTCGGAACGCACGTGATGGTCCATGAGCTGGACTCCACAGGTCCTTC
CCCACCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGC
TTTGCTTCTTGACGCGATGGATGTAGTTTTGATCCCGCCTCACATAACTT
GTATTCATCCAGATTGCGCCCGCTCCTACGTGTTTCGGGGTAGCAAGGAG
TACACCCCCCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGG
ACAGGACACGAGGAGAAAAGGCCACGAGCGGCGCCGGTTCGTCTGTCCAA
AGCGTTGGGGGAAACGCAAAAGCTCTCCCCACAGTATACTGTACCGTTCT
GTAATCGATCCCCCTCCCCTTCCACGTCCCTCAGCGCGTGCAAGACCTCC
TAAACATCGCTCCGCCCATGCGCGGGCAAGCGCCTGGGATGGGACAGCCA
GGTAAGGGAAGAGGAGGGGGGGAACGAAGGGAGGGAGGGGGAGAAGGATG
CCTGTGGGCAACGGGACAAGGGTGGCGGAGACGAGTGGAAGAGAGCGGAT
GA
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Coding sequence (CDS) from alignment at CM002463.1:108671..109522-

>rna4258 ID=rna4258|Name=rna4258|organism=Nannochloropsis gaditana|type=CDS|length=1980bp|location=Sequence derived from alignment at CM002463.1:108671..109522- (Nannochloropsis gaditana)
CGCGTGCAAGACCTCCTAAACATCGCTCCGCCCATGCGCGGGCAAGCGCC
TGGGATGGGACAGCCAGGTAAGGGAAGAGGAGGGGGGGAACGAAGGGAGG
GAGGGGGAGAAGGATGCCTGTGGGCAACGGGACAAGGGTGGCGGAGACGA
GTGGAAGAGAGCGGATGAATTGCGCCCGCTCCTACGTGTTTCGGGGTAGC
AAGGAGTACACCCCCCAGGTGCTCCAGCTGCTCCCAGAGACTGCCTTGGT
GGGTCTCATCACCTTCGGAACGCACGTGATGGTCCATGAGCTGGACTCCA
CAGGACCGCCCGTCTTCCTCCTTGTCGTGGACACGTGCTTGGACGACGCC
GAGCTCGAGCACTTGAAGGATTCCTTGCAACAGATGGGATATTGTGCGCG
TGCAAGACCTCCTAAACATCGCTCCGCCCATGCGCGGGCAAGCGCCTGGG
ATGGGACAGCCAGGTAAGGGAAGAGGAGGGGGGGAACGAAGGGAGGGAGG
GGGAGAAGGATGCCTGTGGGCAACGGGACAAGGGTGGCGGAGACGAGTGG
AAGAGAGCGGATGAATTGCGCCCGCTCCTACGTGTTTCGGGGTAGCAAGG
AGTACACCCCCCAGGTGCTCCAGCTGCTCCCAGAGACTGCCTTGGTGGGT
CTCATCACCTTCGGAACGCACGTGATGGTCCATGAGCTGGACTCCACAGG
ACCGCCCGTCTTCCTCCTTGTCGTGGACACGTGCTTGGACGACGCCGAGC
TCGAGCACTTGAAGGATTCCTTGCAACAGATGGGATATTGTGCGCGTGCA
AGACCTCCTAAACATCGCTCCGCCCATGCGCGGGCAAGCGCCTGGGATGG
GACAGCCAGGTAAGGGAAGAGGAGGGGGGGAACGAAGGGAGGGAGGGGGA
GAAGGATGCCTGTGGGCAACGGGACAAGGGTGGCGGAGACGAGTGGAAGA
GAGCGGATGAATTGCGCCCGCTCCTACGTGTTTCGGGGTAGCAAGGAGTA
CACCCCCCAGGTGCTCCAGCTGCTCCCAGAGACTGCCTTGGTGGGTCTCA
TCACCTTCGGAACGCACGTGATGGTCCATGAGCTGGACTCCACAGGACCG
CCCGTCTTCCTCCTTGTCGTGGACACGTGCTTGGACGACGCCGAGCTCGA
GCACTTGAAGGATTCCTTGCAACAGATGGGATATTGTGCGCGTGCAAGAC
CTCCTAAACATCGCTCCGCCCATGCGCGGGCAAGCGCCTGGGATGGGACA
GCCAGGTAAGGGAAGAGGAGGGGGGGAACGAAGGGAGGGAGGGGGAGAAG
GATGCCTGTGGGCAACGGGACAAGGGTGGCGGAGACGAGTGGAAGAGAGC
GGATGAATTGCGCCCGCTCCTACGTGTTTCGGGGTAGCAAGGAGTACACC
CCCCAGGTGCTCCAGCTGCTCCCAGAGACTGCCTTGGTGGGTCTCATCAC
CTTCGGAACGCACGTGATGGTCCATGAGCTGGACTCCACAGGACCGCCCG
TCTTCCTCCTTGTCGTGGACACGTGCTTGGACGACGCCGAGCTCGAGCAC
TTGAAGGATTCCTTGCAACAGATGGGATATTGTGCGCGTGCAAGACCTCC
TAAACATCGCTCCGCCCATGCGCGGGCAAGCGCCTGGGATGGGACAGCCA
GGTAAGGGAAGAGGAGGGGGGGAACGAAGGGAGGGAGGGGGAGAAGGATG
CCTGTGGGCAACGGGACAAGGGTGGCGGAGACGAGTGGAAGAGAGCGGAT
GAATTGCGCCCGCTCCTACGTGTTTCGGGGTAGCAAGGAGTACACCCCCC
AGGTGCTCCAGCTGCTCCCAGAGACTGCCTTGGTGGGTCTCATCACCTTC
GGAACGCACGTGATGGTCCATGAGCTGGACTCCACAGGACCGCCCGTCTT
CCTCCTTGTCGTGGACACGTGCTTGGACGACGCCGAGCTCGAGCACTTGA
AGGATTCCTTGCAACAGATGGGATATTGTG
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Synonyms
Publications