EWM26425.1, cds4248 (CDS) Nannochloropsis gaditana

Overview
NameEWM26425.1
Unique Namecds4248
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:109510..109522 -
Alignment locationCM002463.1:109365..109444 -
Alignment locationCM002463.1:109180..109264 -
Alignment locationCM002463.1:109011..109060 -
Alignment locationCM002463.1:108671..108838 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26425.1
Productprotein transport protein sec23a
Orig transcript idgnl|cribi|Naga_102251g1.6273.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:109510..109522 -
CM002463.1supercontigCM002463.1:109365..109444 -
CM002463.1supercontigCM002463.1:109180..109264 -
CM002463.1supercontigCM002463.1:109011..109060 -
CM002463.1supercontigCM002463.1:108671..108838 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
GO:0030127COPII vesicle coat
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR006896Sec23/24_trunk_dom
Homology
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|585108464|gb|EWM26425.1| (protein transport protein sec23a [Nannochloropsis gaditana])

HSP 1 Score: 267.7 bits (683), Expect = 8.703e-91
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query:    1 MGYCGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGGERREGGGEGCLWATGQGWRRRVEESG 131
            MGYCGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGGERREGGGEGCLWATGQGWRRRVEESG
Sbjct:    1 MGYCGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGGERREGGGEGCLWATGQGWRRRVEESG 131          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|589277330|ref|XP_007004395.1| (hypothetical protein TREMEDRAFT_71580 [Tremella mesenterica DSM 1558] >gi|392577168|gb|EIW70298.1| hypothetical protein TREMEDRAFT_71580 [Tremella mesenterica DSM 1558])

HSP 1 Score: 120.553 bits (301), Expect = 3.557e-29
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 0
Query:    6 PPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQP 98
            PP+FL VVDTC+D+ EL+ L+++L   L LLP TALVGLITFGT  MVHEL  +DC +SYVFRGSKEY P+++ D+L + P  R QA   GQP
Sbjct:  125 PPIFLYVVDTCVDEDELKALRETLVVSLSLLPPTALVGLITFGTMTMVHELAYSDCPKSYVFRGSKEYQPKQIADMLGLNPSNRMQAVRPGQP 217          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|1009365328|gb|KYM90359.1| (Protein transport protein Sec23A [Atta colombica])

HSP 1 Score: 117.857 bits (294), Expect = 3.992e-28
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 0
Query:    4 CGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGG 105
            C PP+FLLVVDTCLDD EL  LKDSLQ  L LLP  AL+GLITFG  V VHEL    C++SYVFRG+K+  P++VQD+L I  P+ GQ P   QP   RG G
Sbjct:  126 CLPPIFLLVVDTCLDDEELGALKDSLQMSLSLLPSNALIGLITFGKMVQVHELGCDGCSKSYVFRGTKDLQPKQVQDMLGIGRPIPGQNP--NQP---RGSG 222          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|1009413371|gb|KYN32271.1| (Protein transport protein Sec23A [Trachymyrmex septentrionalis])

HSP 1 Score: 117.472 bits (293), Expect = 4.226e-28
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 0
Query:    4 CGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGG 105
            C PP+FLLVVDTCLDD EL  LKDSLQ  L LLP  AL+GLITFG  V VHEL    C++SYVFRG+K+  P++VQD+L I  P+ GQ P   QP   RG G
Sbjct:  126 CLPPIFLLVVDTCLDDEELGALKDSLQMSLSLLPSNALIGLITFGKMVQVHELGCDGCSKSYVFRGTKDLQPKQVQDMLGIGRPIPGQNP--NQP---RGSG 222          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|1069673831|ref|XP_018318367.1| (PREDICTED: protein transport protein Sec23A [Trachymyrmex zeteki])

HSP 1 Score: 117.472 bits (293), Expect = 4.330e-28
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 0
Query:    4 CGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGG 105
            C PP+FLLVVDTCLDD EL  LKDSLQ  L LLP  AL+GLITFG  V VHEL    C++SYVFRG+K+  P++VQD+L I  P+ GQ P   QP   RG G
Sbjct:  126 CLPPIFLLVVDTCLDDEELGALKDSLQMSLSLLPSNALIGLITFGKMVQVHELGCDGCSKSYVFRGTKDLQPKQVQDMLGIGRPIPGQNP--NQP---RGSG 222          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|815893450|ref|XP_012243471.1| (PREDICTED: protein transport protein Sec23A [Bombus impatiens])

HSP 1 Score: 117.472 bits (293), Expect = 4.330e-28
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 0
Query:    4 CGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPG 94
            C PP+FLLVVDTC+DD EL  LKDSLQ  L LLP  AL+GLITFG  V VHEL    C++SYVFRG+K+  P++VQD+L I  PM GQ P 
Sbjct:  126 CLPPIFLLVVDTCMDDEELGSLKDSLQMSLSLLPSNALIGLITFGRMVQVHELGCEGCSKSYVFRGTKDLQPKQVQDMLGIGRPMPGQNPN 216          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|332030321|gb|EGI70064.1| (Protein transport protein Sec23A [Acromyrmex echinatior])

HSP 1 Score: 117.472 bits (293), Expect = 4.381e-28
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 0
Query:    4 CGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGG 105
            C PP+FLLVVDTCLDD EL  LKDSLQ  L LLP  AL+GLITFG  V VHEL    C++SYVFRG+K+  P++VQD+L I  P+ GQ P   QP   RG G
Sbjct:  133 CLPPIFLLVVDTCLDDEELGALKDSLQMSLSLLPSNALIGLITFGKMVQVHELGCDGCSKSYVFRGTKDLQPKQVQDMLGIGRPIPGQNP--NQP---RGSG 229          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|1070200042|ref|XP_018369517.1| (PREDICTED: protein transport protein Sec23A [Trachymyrmex cornetzi] >gi|1009394085|gb|KYN15158.1| Protein transport protein Sec23A [Trachymyrmex cornetzi])

HSP 1 Score: 117.472 bits (293), Expect = 4.679e-28
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 0
Query:    4 CGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGG 105
            C PP+FLLVVDTCLDD EL  LKDSLQ  L LLP  AL+GLITFG  V VHEL    C++SYVFRG+K+  P++VQD+L I  P+ GQ P   QP   RG G
Sbjct:  126 CLPPIFLLVVDTCLDDEELGALKDSLQMSLSLLPSNALIGLITFGKMVQVHELGCDGCSKSYVFRGTKDLQPKQVQDMLGIGRPIPGQNP--NQP---RGSG 222          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|746833593|ref|XP_011064305.1| (PREDICTED: protein transport protein Sec23A [Acromyrmex echinatior] >gi|801382897|ref|XP_012054580.1| PREDICTED: protein transport protein Sec23A [Atta cephalotes] >gi|1068382888|ref|XP_018058916.1| PREDICTED: protein transport protein Sec23A [Atta colombica] >gi|1070193219|ref|XP_018352873.1| PREDICTED: protein transport protein Sec23A [Trachymyrmex septentrionalis])

HSP 1 Score: 117.472 bits (293), Expect = 4.679e-28
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 0
Query:    4 CGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGG 105
            C PP+FLLVVDTCLDD EL  LKDSLQ  L LLP  AL+GLITFG  V VHEL    C++SYVFRG+K+  P++VQD+L I  P+ GQ P   QP   RG G
Sbjct:  126 CLPPIFLLVVDTCLDDEELGALKDSLQMSLSLLPSNALIGLITFGKMVQVHELGCDGCSKSYVFRGTKDLQPKQVQDMLGIGRPIPGQNP--NQP---RGSG 222          
BLAST of EWM26425.1 vs. NCBI_GenBank
Match: gi|1012984458|gb|KYQ58107.1| (Protein transport protein Sec23A [Trachymyrmex zeteki])

HSP 1 Score: 117.472 bits (293), Expect = 4.716e-28
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 0
Query:    4 CGPPVFLLVVDTCLDDAELEHLKDSLQQVLQLLPETALVGLITFGTHVMVHELDSTDCARSYVFRGSKEYTPQRVQDLLNIAPPMRGQAPGMGQPGKGRGGG 105
            C PP+FLLVVDTCLDD EL  LKDSLQ  L LLP  AL+GLITFG  V VHEL    C++SYVFRG+K+  P++VQD+L I  P+ GQ P   QP   RG G
Sbjct:  126 CLPPIFLLVVDTCLDDEELGALKDSLQMSLSLLPSNALIGLITFGKMVQVHELGCDGCSKSYVFRGTKDLQPKQVQDMLGIGRPIPGQNP--NQP---RGSG 222          
The following BLAST results are available for this feature:
BLAST of EWM26425.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108464|gb|EWM26425.1|8.703e-91100.00protein transport protein sec23a [Nannochloropsis ... [more]
gi|589277330|ref|XP_007004395.1|3.557e-2960.22hypothetical protein TREMEDRAFT_71580 [Tremella me... [more]
gi|1009365328|gb|KYM90359.1|3.992e-2860.78Protein transport protein Sec23A [Atta colombica][more]
gi|1009413371|gb|KYN32271.1|4.226e-2860.78Protein transport protein Sec23A [Trachymyrmex sep... [more]
gi|1069673831|ref|XP_018318367.1|4.330e-2860.78PREDICTED: protein transport protein Sec23A [Trach... [more]
gi|815893450|ref|XP_012243471.1|4.330e-2862.64PREDICTED: protein transport protein Sec23A [Bombu... [more]
gi|332030321|gb|EGI70064.1|4.381e-2860.78Protein transport protein Sec23A [Acromyrmex echin... [more]
gi|1070200042|ref|XP_018369517.1|4.679e-2860.78PREDICTED: protein transport protein Sec23A [Trach... [more]
gi|746833593|ref|XP_011064305.1|4.679e-2860.78PREDICTED: protein transport protein Sec23A [Acrom... [more]
gi|1012984458|gb|KYQ58107.1|4.716e-2860.78Protein transport protein Sec23A [Trachymyrmex zet... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4258rna4258Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications