rna4256, rna4256 (mRNA) Nannochloropsis gaditana

Overview
Namerna4256
Unique Namerna4256
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length747
Alignment locationCM002463.1:102224..103646 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100241g2.3011.mrna
Orig protein idgnl|cribi|Naga_100241g2.3011
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:102224..103646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100241g2gene4098Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4256rna4256-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26427.1cds4246Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4256 ID=rna4256|Name=rna4256|organism=Nannochloropsis gaditana|type=mRNA|length=747bp
ATGAATCCGATACACTTTCTTCTCTTCCTCATTGTCATCGCCTCAACGAC
TGCCTTTCATACGGCTCCATGGGCATCTCCCTCCTCCACCGCCTCCCTTC
TGCCACTTCACCGGCAATACAAACAAAACGAGCAAAGGCCTCAATCTGCT
CTGACGCGCCTGGCAACGATACGAGGAGGAGTGTCGGGGAAAGTGAGAAC
TCACATGATAGAGGAGGGCGAGAAAGGGAAAAAAGACAACTTCTCTCACT
TTCTTGTGATATTACCTGTGTCGGAAGTACGCACGTTGGAGGAGACGGAG
GAAGCATTGAATGGAGCAGGGAGCAAGCTGGTTGTCTTGGATTTTACGGC
GACGTGGTGTGGCCCGTGTAAGCTCATCTCTCCTGTCTTCGAGGGTCTCT
CAGAGGAGATCTCTGAGAACGAGGCCGTCTTCTTGAAGGTGGACGTTGAC
GTGAACGAGGAGACAGCAAAGAAATTCGAGGTGTCACAAATGCCGGTATA
CATTCATCTTCGTCAAAAATTCGGAAGTGAAAGGCCGACTGGTCGGTGCC
AATCCAGACAAGCTTCGAGAGGCCGTCTTCCGCCTTCTGTAGGGAAGAGA
AGAGTGAGGAAACGACATGTGGCTTTTCTCCTAACAAAGTGGAGAAGGAA
AATTGGACAGGGTGGTTTAGGCCTGCACTTTTCATCGCTAAGCGAAGCGA
AGGTGTGTACGAAAGTAAAACCATTTCGACCAACACGTCTTATTTAA
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protein sequence of rna4256

>rna4256-protein ID=rna4256-protein|Name=rna4256|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MEPASNKQLLMHITPDEEDGVPLIRGAIFLKPLFQWPPSTLNTRRNRISK
RRPGNQSHHMDATEDRFHVICGEHGVFQIGSKVVGSFSVPDSYNARCT
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mRNA from alignment at CM002463.1:102224..103646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4256 ID=rna4256|Name=rna4256|organism=Nannochloropsis gaditana|type=mRNA|length=1423bp|location=Sequence derived from alignment at CM002463.1:102224..103646+ (Nannochloropsis gaditana)
ATGGAACCTGCATCGAACAAACAGCTATTGATGCACATAACGCcggatga
agaagatggagtaCCACTTATACGGGGTGCAATATTTCTCAAACCTTTAT
TTCAATGGCGTGCGAAGCACTTTCATCAAAGCTGAACTAAACGAAATTGC
ATTCTACCAAAGCGCTTCAAACTTTTCGAAATTTGAATTGATGTGTACTT
TTCTTTGAGCATCGCAATTTTTTTTGACTGGTTCTCTTTATGAAATGTCC
GCTTGTATTGTTCATGATGTTGGAGGAGAATTATCGGGGCAATATGCAGA
GTGAAATGCAGTCGAAAAAATGAATGCGAAGAAAAAGTTTCGCCCTTTTG
CTAATTTTGCTGTGATTTAATTTAGAGGGGAAGCTTGTCAAGTCTGTCAG
TTTTCACGCTGGCGCTGTGTCTTTGATTTTCATGAAGTATAATCACACCT
AAGACCATGCACATCATCACATCATCAGTGAAAGACCCGCTTTCCGTTAG
GCTTCGAATGCGACCGGTTCCTTTCAAATTTCAAAAATCTGAGCGAAGTC
GGGAATTTTTTACCACGCGTTTTTAGCTGACCTAAATTCCCGCTTTCTCG
CTGTTGACAGAAGCACTTTCGAAAGCTCTGTGCATACTACTGAATACACA
AACTTGCTCGTCGGTTTTCCAACGCGATTATGGCTCTGTTCAGTTCTGCT
GGCATTTGCAGAATCAGCAGGTTGTAGGAGTAATTGGAAAATGCCCGCCC
TGTCTTGTGGAGAACAATAATGCGAAGACGTTCTTTTACGTTCTCCGCAC
GTTCGAAAGTGATACATCTGTTTGAATCATGGCTGTGTGTATGTAGGTAG
GATAGTACCActctttcctgcctctgGAATGTGCTTCGTGGCGATTGATC
GATGGCGAACGGCGGCATTTATCCGCGCGTTTCATGCGCGGTTGTCATGC
CTTCCGAGCTTTCTTTCTCACACAATCGATAATTGCCTCCATTAATTTGG
TAGATTTTTCGTGAAAATTTTAGCTTGTTGACCATTGTGCTGAGAGAAGT
GTCATTTCACATGTTTGACTCGCGTAGGTGCATCTACGGGGGAGCACCAC
CTCGCGGAAGAGTGGTGTTGTCCCAGGACTGCATCTACGCGAGGCAAACA
TGTGGAAGACCCGTCTCTGTGCATGTGAATAATTAACACCATCAAAAAGA
AATCTACTAACGCTCTTTCGGAGCTCCCTTTGTAGCCCCTTCAACTCTGA
ATACACGCAGGAATCGAATAAGCAAGCGACGCCCGGGTAATCAGAGTCAT
CATATGGACGCTACAGAAGACAGATTTCATGTCATTTGCGGAGAGCACGG
GGTGTTTCAGATCGGCTCAAAGGTTGTGGGATCCTTTTCGGTGCCCGATT
CATACAATGCGCGCTGTACGTAG
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Coding sequence (CDS) from alignment at CM002463.1:102224..103646+

>rna4256 ID=rna4256|Name=rna4256|organism=Nannochloropsis gaditana|type=CDS|length=594bp|location=Sequence derived from alignment at CM002463.1:102224..103646+ (Nannochloropsis gaditana)
ATGGAACCTGCATCGAACAAACAGCTATTGATGCACATAACGCcggatga
agaagatggagtaCCACTTATACGGGGTGCAATATTTCTCAAACCTTTAT
TTCAATGGCCCCCTTCAACTCTGAATACACGCAGGAATCGAATAAGCAAG
CGACGCCCGGGTAATCAGAGTCATCATATGGACGCTACAGAAGACAGATT
TCATGTCATTTGCGGAGAGCACGGGGTGTTTCAGATCGGCTCAAAGGTTG
TGGGATCCTTTTCGGTGCCCGATTCATACAATGCGCGCTGTACGTAGATG
GAACCTGCATCGAACAAACAGCTATTGATGCACATAACGCcggatgaaga
agatggagtaCCACTTATACGGGGTGCAATATTTCTCAAACCTTTATTTC
AATGGCCCCCTTCAACTCTGAATACACGCAGGAATCGAATAAGCAAGCGA
CGCCCGGGTAATCAGAGTCATCATATGGACGCTACAGAAGACAGATTTCA
TGTCATTTGCGGAGAGCACGGGGTGTTTCAGATCGGCTCAAAGGTTGTGG
GATCCTTTTCGGTGCCCGATTCATACAATGCGCGCTGTACGTAG
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Synonyms
Publications