rna4255, rna4255 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4255
Unique Name	rna4255
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2087
Alignment location	CM002463.1:100846..102196 +

Link to JBrowse

Properties


Property Name	Value
Product	thioredoxin-1
Orig transcript id	gnl\|cribi\|Naga_100241g3.3014.mrna
Orig protein id	gnl\|cribi\|Naga_100241g3.3014
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:100846..102196 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100241g3	gene4097	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4255	rna4255-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26430.1	cds4245	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:100846..102196+
coding sequence from alignment at CM002463.1:100846..102196+

mRNA sequence

>rna4255 ID=rna4255|Name=rna4255|organism=Nannochloropsis gaditana|type=mRNA|length=2087bp
GTGCTACAGCGGTCGATCTCTTATCGCAAAGTCCTTGAAAGGATGCAGTA
CTCTTCTGTTACCCTTGTCATCATACAGCTTGTCCTCGGTATCCTCGTCT
TATGCCTTTCTCAGCTGAGCACCGCTAGTATCCAACTTACGGCTTCCCAG
CAATGTCCGCGCCTAGCGATACGTGCTAAGGCGCATCCCAACACCAAACA
CGGAGTCTTAGCTGGGAAGGGTAAAGCTCAGATATCCGTAATACTTCGCA
CTAAAGATCCTATCAGTGACTTAAATTTTAAAATGACCTTGCCAAGCGGG
ATGTCTGTGAGACGGACAGCGACCCGTCCGTCAATCAAACCTCACATGCC
GCCTGAGGTTGTTGGAAACATCGACGGAACCACAGCCCTTTACTGGCTGG
ACATTGATTTTTCTAGGCGGTCAAAACGCCGCTTTCGAGTCAAGGTTAAC
ATTGATTTGTGCGCTCCTGAGCATCTCGTGGTAGATGCTTTTGCTTACCT
GAACAACGCAACTTCCACCTGGTGTGTGACCCCTTTAGCGAGTCCCGCAC
TCCTGCGCGCGCGATATCCAAAGGAAAAGCCAGCAACTTGCGCTCCAACA
TTGGCTCCTTCTGTCAATCCTACACAATCTTTCGTTGTCTTTGCCCCGGG
ACAGCGCTTTTCACAAGGTGGTCAGCTAGCGCCATTTGATAATCGTCGTC
TGTCGCTGCATCCTGAAATGAACCTAGCCATAAACCAGGACGTTCTTTCC
TTCGGAGACACGTATCATCGTCAATTGCAACCTATTGAGACGAAGGATGA
CTGTTATGAGTATTGCTCCCTTGTAGGAGGAAAAATTGCGCCGTTCTTCT
TCAGCTGGAATAATGCCACAAGCCAGTGTTTCTGCTGTGCAACTGTGTGC
ACTCCCTTCATATACGATCCTGCATTCGATGTACAAAAGGTGCTCGTTTC
TGCTACCAGCGCTCCAACATTTACTCCTGCCCCATCTCCCTCGGATCAAA
ATCGCCGCCTTTACAATATAACCGCTGTCAGGACAATTTTGGACTATGCT
GAAGCATCGTATTCATGCAAAACTAGCGCCTGTGAGGCTTGGAATTGCAG
TACTTGCTCCCGACACCCGGACACGGAAGTGAGGCGCATTTCTGCTCCTG
ACGGGGATGGCTTTGTGGGTTACAACTCAGTCGAAGGAGCCCTTGTGGTG
GCGTTTGCTGGCACGTCCATGGATGACATAGTAGAATGGATGGCCAACTT
AGACTTTAAGAAAGAAGATTTTCCTCATGACGGATGTGAGGGTTGTCAGG
TTCACACGGGATTCTACACCGCATACTTGGAACTTCGAAGCCAGGTCCGG
GAATTTGTGCAATACTTTTTACAGCAACATCCAGACGCACCGATCTGGGT
TACAGGTCATTCCCTCGGAGCAGCCATTGCAGTCCATTGCATGGTCGATC
TTATGTCTCTCTCGTACAATGTTCGGCGGGTCGTCAACTTCGGGCAGCCT
CGCGTCGGAAACAAACAGTTCGCTACCTTCGTCGCGTCGCTCGCCGAGTC
TCTTGATTTTCCTCTCTACCGGCTCGTGCATCATCGTGATCCGGTGCCTC
ATCTGCCCCCAAGAGCTTTTGGTTTTCACCACCAACCCTTCGAGGTCTTC
TACAACGAAGACCAAACTTCTTACATCGTTTGCAATGACTCTGGTGAGGA
CCTTCAGTGCTCGGATCAATTTTTGGTCGACTTGGATGTTGCAGATCATC
TGAACTACCTAGGGGTACCTATGGGATGAGTGAGTACGGAAAACCGTTGT
GCTCACCAGATTTTTCGCTTACCGGAGCTGACGAAGGGGCACTCTTCAAG
CATGCCATCGAGCATGGAAAGCCATTACGGAGAAAGATTGGAACGTGCAA
TGAATACGATGGGAAGATATTAGAGGTCTCATGGCTTTATCGCACAAAAA
TTATTGAACATTTAAGATGGTAGGTGCAAAGATATGAGCTGAAGAAAAAG
CAGCCCGAATTTTTGAGTATATCTTTGCACCATGCTTTGATGGAATCTGT
CTCAAAGAAAGAAAAAACCTTTCAAGTGATGCTAATT

protein sequence of rna4255

>rna4255-protein ID=rna4255-protein|Name=rna4255|organism=Nannochloropsis gaditana|type=polypeptide|length=248bp
MNPIHFLLFLIVIASTTAFHTAPWASPSSTASLLPLHRQYKQNEQRPQSA
LTRLATIRGGVSGKVRTHMIEEGEKGKKDNFSHFLVILPVSEVRTLEETE
EALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVD
VNEETAKKFEVSQMPVYIHLRQKFGSERPTGRCQSRQASRGRLPPSVGKR
RVRKRHVAFLLTKWRRKIGQGGLGLHFSSLSEAKVCTKVKPFRPTRLI

mRNA from alignment at CM002463.1:100846..102196+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4255 ID=rna4255|Name=rna4255|organism=Nannochloropsis gaditana|type=mRNA|length=1351bp|location=Sequence derived from alignment at CM002463.1:100846..102196+ (Nannochloropsis gaditana)
ATGAATCCGATAcactttcttctcttcctcattGTCATCGCCTCAACGAC
TGCCTTTCATACGGCTCCATgggcatctccctcctccaccgcctcccttc
tgccaCTTCACCGGCAATACAAACAAAACGAGCAAAGGCCTCAATCTGCT
CTGACGCGCCTGGCAACGATACGAGGAGGAGTGTCGGGGAAAGTGAGAAC
TCACATGatagaggagggcgagaaagggaaaaaagacaaCTTCTCTCACT
TTCTTGTGATATTACCTGTAGGAGCAACGTAGTGCATGTAGTCCTCAAGT
AGAGGACCACAAAGTATGTTTCTGAAGTAGGTTCGAGGATCTGCAGCCTT
GCTGATCGTCTCTTTTCCGTCTTGTTCTTTCTGGACGGTCCTTGCGACAG
GTGTCGGAAGTACGCAcgttggaggagacggaggaagcatTGAATGGAGC
AGGGAGCAAGCTGGTTGTCTTGGATTTTACGGCGACGTGGTAAgtcaggg
aaaaggaaacgcTGTatggaaaggcgggaaagagggcgaagaaggaggaa
tctCTGCCTCGGGGTTTTTTAGCATGACATCGCAAGGGATTCAATGCGCG
GTTCACAGCGTCGAGGTGTAAAGACATCGCCTCCTCTACTTTTTCCAATG
TACGTTTTAATCCCAATCCATTACTTGTCTGCAGGTGTGGCCCGTGTAAG
CTCATCTCTCCTGTCTTCGAGGGTCTCTCAGAGGAGATCTCTGAGAACGA
GGCCGTCTTCTTGAAGGTGGACGTTGACGTGAACGAGGTGAGAAGCCGGA
GAGAAGTTGGGTGGGCGTAAAAGCAAGGACAGTCgggctgggaggaaatg
gaccCCTCGGTGGATCGACATgatccgcctccctcaccctcctctctctt
cctctccgacTGCTCCCATCACCCATCAGGAGACAGCAAAGAAATTCGAG
GTGTCACAAATGCCGGTATGTTGTCGGTTCGACGGGCGCTCTCGATCAGA
GACATGCCTGATGAAATAGTGCCACAGTCAAAAGATTGATTTTGTCTACC
CTTCAATTCAGCTATTCAAATCACCCCATGATGCCCCATCTATTCCTCTT
TAGACATTCATCTTCGTCAAAAATTCGGAAGTGAAAGGCCGACTGGTCGG
TGCCAATCCAGACAAGCTTCGAGAGGCCGTCTTCCGCCTTCTgtagggaa
gagaagagtgAGGAAACGACATGTGGCTTTTCTCCTAACaaagtggagaa
ggaaaattgGACAGGGTGGTTTAGGCCTGCACTTTTCATCGCTAAGCGAA
GCGAAGGTGTGTACGAAAGTAAAACCATTTCGACCAACACGTcttattta
a

Coding sequence (CDS) from alignment at CM002463.1:100846..102196+

>rna4255 ID=rna4255|Name=rna4255|organism=Nannochloropsis gaditana|type=CDS|length=3735bp|location=Sequence derived from alignment at CM002463.1:100846..102196+ (Nannochloropsis gaditana)
ATGAATCCGATAcactttcttctcttcctcattGTCATCGCCTCAACGAC
TGCCTTTCATACGGCTCCATgggcatctccctcctccaccgcctcccttc
tgccaCTTCACCGGCAATACAAACAAAACGAGCAAAGGCCTCAATCTGCT
CTGACGCGCCTGGCAACGATACGAGGAGGAGTGTCGGGGAAAGTGAGAAC
TCACATGatagaggagggcgagaaagggaaaaaagacaaCTTCTCTCACT
TTCTTGTGATATTACCTGTGTCGGAAGTACGCAcgttggaggagacggag
gaagcatTGAATGGAGCAGGGAGCAAGCTGGTTGTCTTGGATTTTACGGC
GACGTGGTGTGGCCCGTGTAAGCTCATCTCTCCTGTCTTCGAGGGTCTCT
CAGAGGAGATCTCTGAGAACGAGGCCGTCTTCTTGAAGGTGGACGTTGAC
GTGAACGAGGAGACAGCAAAGAAATTCGAGGTGTCACAAATGCCGGTATA
CATTCATCTTCGTCAAAAATTCGGAAGTGAAAGGCCGACTGGTCGGTGCC
AATCCAGACAAGCTTCGAGAGGCCGTCTTCCGCCTTCTgtagggaagaga
agagtgAGGAAACGACATGTGGCTTTTCTCCTAACaaagtggagaaggaa
aattgGACAGGGTGGTTTAGGCCTGCACTTTTCATCGCTAAGCGAAGCGA
AGGTGTGTACGAAAGTAAAACCATTTCGACCAACACGTcttatttaaATG
AATCCGATAcactttcttctcttcctcattGTCATCGCCTCAACGACTGC
CTTTCATACGGCTCCATgggcatctccctcctccaccgcctcccttctgc
caCTTCACCGGCAATACAAACAAAACGAGCAAAGGCCTCAATCTGCTCTG
ACGCGCCTGGCAACGATACGAGGAGGAGTGTCGGGGAAAGTGAGAACTCA
CATGatagaggagggcgagaaagggaaaaaagacaaCTTCTCTCACTTTC
TTGTGATATTACCTGTGTCGGAAGTACGCAcgttggaggagacggaggaa
gcatTGAATGGAGCAGGGAGCAAGCTGGTTGTCTTGGATTTTACGGCGAC
GTGGTGTGGCCCGTGTAAGCTCATCTCTCCTGTCTTCGAGGGTCTCTCAG
AGGAGATCTCTGAGAACGAGGCCGTCTTCTTGAAGGTGGACGTTGACGTG
AACGAGGAGACAGCAAAGAAATTCGAGGTGTCACAAATGCCGGTATACAT
TCATCTTCGTCAAAAATTCGGAAGTGAAAGGCCGACTGGTCGGTGCCAAT
CCAGACAAGCTTCGAGAGGCCGTCTTCCGCCTTCTgtagggaagagaaga
gtgAGGAAACGACATGTGGCTTTTCTCCTAACaaagtggagaaggaaaat
tgGACAGGGTGGTTTAGGCCTGCACTTTTCATCGCTAAGCGAAGCGAAGG
TGTGTACGAAAGTAAAACCATTTCGACCAACACGTcttatttaaATGAAT
CCGATAcactttcttctcttcctcattGTCATCGCCTCAACGACTGCCTT
TCATACGGCTCCATgggcatctccctcctccaccgcctcccttctgccaC
TTCACCGGCAATACAAACAAAACGAGCAAAGGCCTCAATCTGCTCTGACG
CGCCTGGCAACGATACGAGGAGGAGTGTCGGGGAAAGTGAGAACTCACAT
GatagaggagggcgagaaagggaaaaaagacaaCTTCTCTCACTTTCTTG
TGATATTACCTGTGTCGGAAGTACGCAcgttggaggagacggaggaagca
tTGAATGGAGCAGGGAGCAAGCTGGTTGTCTTGGATTTTACGGCGACGTG
GTGTGGCCCGTGTAAGCTCATCTCTCCTGTCTTCGAGGGTCTCTCAGAGG
AGATCTCTGAGAACGAGGCCGTCTTCTTGAAGGTGGACGTTGACGTGAAC
GAGGAGACAGCAAAGAAATTCGAGGTGTCACAAATGCCGGTATACATTCA
TCTTCGTCAAAAATTCGGAAGTGAAAGGCCGACTGGTCGGTGCCAATCCA
GACAAGCTTCGAGAGGCCGTCTTCCGCCTTCTgtagggaagagaagagtg
AGGAAACGACATGTGGCTTTTCTCCTAACaaagtggagaaggaaaattgG
ACAGGGTGGTTTAGGCCTGCACTTTTCATCGCTAAGCGAAGCGAAGGTGT
GTACGAAAGTAAAACCATTTCGACCAACACGTcttatttaaATGAATCCG
ATAcactttcttctcttcctcattGTCATCGCCTCAACGACTGCCTTTCA
TACGGCTCCATgggcatctccctcctccaccgcctcccttctgccaCTTC
ACCGGCAATACAAACAAAACGAGCAAAGGCCTCAATCTGCTCTGACGCGC
CTGGCAACGATACGAGGAGGAGTGTCGGGGAAAGTGAGAACTCACATGat
agaggagggcgagaaagggaaaaaagacaaCTTCTCTCACTTTCTTGTGA
TATTACCTGTGTCGGAAGTACGCAcgttggaggagacggaggaagcatTG
AATGGAGCAGGGAGCAAGCTGGTTGTCTTGGATTTTACGGCGACGTGGTG
TGGCCCGTGTAAGCTCATCTCTCCTGTCTTCGAGGGTCTCTCAGAGGAGA
TCTCTGAGAACGAGGCCGTCTTCTTGAAGGTGGACGTTGACGTGAACGAG
GAGACAGCAAAGAAATTCGAGGTGTCACAAATGCCGGTATACATTCATCT
TCGTCAAAAATTCGGAAGTGAAAGGCCGACTGGTCGGTGCCAATCCAGAC
AAGCTTCGAGAGGCCGTCTTCCGCCTTCTgtagggaagagaagagtgAGG
AAACGACATGTGGCTTTTCTCCTAACaaagtggagaaggaaaattgGACA
GGGTGGTTTAGGCCTGCACTTTTCATCGCTAAGCGAAGCGAAGGTGTGTA
CGAAAGTAAAACCATTTCGACCAACACGTcttatttaaATGAATCCGATA
cactttcttctcttcctcattGTCATCGCCTCAACGACTGCCTTTCATAC
GGCTCCATgggcatctccctcctccaccgcctcccttctgccaCTTCACC
GGCAATACAAACAAAACGAGCAAAGGCCTCAATCTGCTCTGACGCGCCTG
GCAACGATACGAGGAGGAGTGTCGGGGAAAGTGAGAACTCACATGataga
ggagggcgagaaagggaaaaaagacaaCTTCTCTCACTTTCTTGTGATAT
TACCTGTGTCGGAAGTACGCAcgttggaggagacggaggaagcatTGAAT
GGAGCAGGGAGCAAGCTGGTTGTCTTGGATTTTACGGCGACGTGGTGTGG
CCCGTGTAAGCTCATCTCTCCTGTCTTCGAGGGTCTCTCAGAGGAGATCT
CTGAGAACGAGGCCGTCTTCTTGAAGGTGGACGTTGACGTGAACGAGGAG
ACAGCAAAGAAATTCGAGGTGTCACAAATGCCGGTATACATTCATCTTCG
TCAAAAATTCGGAAGTGAAAGGCCGACTGGTCGGTGCCAATCCAGACAAG
CTTCGAGAGGCCGTCTTCCGCCTTCTgtagggaagagaagagtgAGGAAA
CGACATGTGGCTTTTCTCCTAACaaagtggagaaggaaaattgGACAGGG
TGGTTTAGGCCTGCACTTTTCATCGCTAAGCGAAGCGAAGGTGTGTACGA
AAGTAAAACCATTTCGACCAACACGTcttatttaa

Synonyms

Publications