EWM26430.1, cds4245 (CDS) Nannochloropsis gaditana

Overview
NameEWM26430.1
Unique Namecds4245
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:100846..101112 +
Alignment locationCM002463.1:101246..101334 +
Alignment locationCM002463.1:101530..101632 +
Alignment locationCM002463.1:101775..101814 +
Alignment locationCM002463.1:101949..102196 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26430.1
Productthioredoxin-1
Orig transcript idgnl|cribi|Naga_100241g3.3014.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:100846..101112 +
CM002463.1supercontigCM002463.1:101246..101334 +
CM002463.1supercontigCM002463.1:101530..101632 +
CM002463.1supercontigCM002463.1:101775..101814 +
CM002463.1supercontigCM002463.1:101949..102196 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|585108470|gb|EWM26430.1| (thioredoxin-1 [Nannochloropsis gaditana])

HSP 1 Score: 508.449 bits (1308), Expect = 0.000e+0
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MNPIHFLLFLIVIASTTAFHTAPWASPSSTASLLPLHRQYKQNEQRPQSALTRLATIRGGVSGKVRTHMIEEGEKGKKDNFSHFLVILPVSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQKFGSERPTGRCQSRQASRGRLPPSVGKRRVRKRHVAFLLTKWRRKIGQGGLGLHFSSLSEAKVCTKVKPFRPTRLI 248
            MNPIHFLLFLIVIASTTAFHTAPWASPSSTASLLPLHRQYKQNEQRPQSALTRLATIRGGVSGKVRTHMIEEGEKGKKDNFSHFLVILPVSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQKFGSERPTGRCQSRQASRGRLPPSVGKRRVRKRHVAFLLTKWRRKIGQGGLGLHFSSLSEAKVCTKVKPFRPTRLI
Sbjct:    1 MNPIHFLLFLIVIASTTAFHTAPWASPSSTASLLPLHRQYKQNEQRPQSALTRLATIRGGVSGKVRTHMIEEGEKGKKDNFSHFLVILPVSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQKFGSERPTGRCQSRQASRGRLPPSVGKRRVRKRHVAFLLTKWRRKIGQGGLGLHFSSLSEAKVCTKVKPFRPTRLI 248          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|553187771|ref|XP_005854675.1| (thioredoxin-1 [Nannochloropsis gaditana CCMP526] >gi|422294382|gb|EKU21682.1| thioredoxin-1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 277.715 bits (709), Expect = 2.983e-92
Identity = 141/172 (81.98%), Postives = 144/172 (83.72%), Query Frame = 0
Query:    1 MNPIHFLLFLIVIASTTAFHTAPWASPSSTASLLPLHRQYKQNEQRPQSALTRLATIRGGVSGKVRTHMIEEGEKGKKDNFSHFLVILPVSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQ 172
            MNPIHFLLFLIVIASTTAFHTAPWASPSSTASLLPLHRQYKQNEQRPQSALTRLATIRGGVSGKV                         SEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMP +I ++ 
Sbjct:    1 MNPIHFLLFLIVIASTTAFHTAPWASPSSTASLLPLHRQYKQNEQRPQSALTRLATIRGGVSGKV-------------------------SEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPTFIFVKN 147          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|298710531|emb|CBJ25595.1| (similar to thioredoxin-like protein [Ectocarpus siliculosus])

HSP 1 Score: 102.064 bits (253), Expect = 4.252e-23
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 0
Query:   90 VSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQ 172
            V +V T EE E+ ++ +   LVV+DFTATWCGPC+ ISPVFE LS+E++  + VFLKVDVD NEETA+K++V QMP ++ +R+
Sbjct:   67 VQQVATQEELEQVISNSNGALVVIDFTATWCGPCQKISPVFELLSQELT--DVVFLKVDVDENEETAQKYDVVQMPTFLFMRK 147          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|1061097368|ref|XP_017875381.1| (PREDICTED: thioredoxin-2 [Ceratina calcarata])

HSP 1 Score: 98.5969 bits (244), Expect = 9.355e-23
Identity = 42/83 (50.60%), Postives = 64/83 (77.11%), Query Frame = 0
Query:   90 VSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQ 172
            V E+++ ++ +  L+GAG KLVV+DF ATWCGPCK+I+P  EGLS+EI+  + +FLKVDVDV E+ A ++E++ MP +I ++ 
Sbjct:    2 VVEIKSADDLKVQLDGAGDKLVVIDFFATWCGPCKMIAPKMEGLSKEIT--DVIFLKVDVDVCEDLAGEYEITSMPTFIFIKN 82          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|1210521626|dbj|GAX19616.1| (thioredoxin 1 [Fistulifera solaris])

HSP 1 Score: 97.0561 bits (240), Expect = 1.057e-21
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 0
Query:   90 VSEVRTLEETEEAL--NGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLR 171
            V E  TLE+ E+ L   GA SKLVV+DFTATWCGPCK+ISPVF  LS+  S ++ VFLKVDVD N +TA K+ VS MP ++ ++
Sbjct:   45 VVEPDTLEDVEDILLKAGAESKLVVIDFTATWCGPCKMISPVFHELSD--SFDDVVFLKVDVDENPDTAAKYNVSAMPTFLFIK 126          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|1210531759|dbj|GAX09726.1| (thioredoxin 1 [Fistulifera solaris])

HSP 1 Score: 95.9005 bits (237), Expect = 2.067e-21
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 0
Query:   90 VSEVRTLEETEEAL--NGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQKFGSERPTGRCQSR 186
            V E  +LE+ E  L   GA SKLVV+DFTATWCGPCK+ISPVF  LSE  S ++ VFLKVDVD N +TA K+ VS MP ++ ++     +R  G   S+
Sbjct:   32 VVEPDSLEDVEAILLKAGAESKLVVIDFTATWCGPCKMISPVFHELSE--SFDDVVFLKVDVDENPDTAAKYNVSAMPTFLFIKGGEIVDRMMGANPSK 128          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|675381351|gb|KFM74253.1| (Thioredoxin, partial [Stegodyphus mimosarum])

HSP 1 Score: 92.8189 bits (229), Expect = 1.261e-20
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 0
Query:   90 VSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQKFGSERPTGRCQSR 186
            V  V   E+ E  L+ AG KLVV+DF ATWCGPCKLI+P F+ LSEE    + VFLKVDVD  E+ A K+ VS +P ++ L+ K   +   G  Q +
Sbjct:    2 VHSVSDTEDFEAQLDAAGEKLVVVDFYATWCGPCKLIAPFFQELSEEF--QDVVFLKVDVDEVEDIASKYNVSSIPKFVFLKNKTEIDDLCGANQEK 96          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|1072255288|ref|XP_018412723.1| (PREDICTED: thioredoxin-like [Nanorana parkeri])

HSP 1 Score: 92.4337 bits (228), Expect = 2.079e-20
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 0
Query:   90 VSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVY 167
            V  + +LEE +EAL GAG KLV++DFTATWCGPCK+I P+FE LS+  S  + VFLKVDVD  ++ A+  ++  MP +
Sbjct:    2 VRHIESLEEFKEALAGAGPKLVIVDFTATWCGPCKMIGPIFEALSQ--SHPDVVFLKVDVDDAQDVAQHCDIKCMPTF 77          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|51869053|emb|CAE54136.1| (thioredoxin-1, partial [Mesobuthus gibbosus])

HSP 1 Score: 92.0485 bits (227), Expect = 4.211e-20
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0
Query:   85 LVILPVSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQKFGSERPTGRCQSR 186
            ++++ V  V   E+ +  +  AG KLVV+DF ATWCGPCK I+P  E L +E S N  VFLKVDVD NEE A+ F VS MP +I L+ +   +  +G  Q +
Sbjct:   14 IIVIMVHLVVDKEDYDSQMEAAGEKLVVIDFFATWCGPCKXIAPFIEKLEQENSGN-VVFLKVDVDENEELAQTFNVSCMPTFILLKNRNKVDEFSGANQEK 114          
BLAST of EWM26430.1 vs. NCBI_GenBank
Match: gi|51869021|emb|CAE54120.1| (thioredoxin-1, partial [Mesobuthus cyprius] >gi|51869025|emb|CAE54122.1| thioredoxin-1, partial [Mesobuthus cyprius] >gi|51869027|emb|CAE54123.1| thioredoxin-1, partial [Mesobuthus cyprius] >gi|51869029|emb|CAE54124.1| thioredoxin-1, partial [Mesobuthus cyprius] >gi|51869031|emb|CAE54125.1| thioredoxin-1, partial [Mesobuthus cyprius] >gi|51869033|emb|CAE54126.1| thioredoxin-1, partial [Mesobuthus cyprius])

HSP 1 Score: 91.6633 bits (226), Expect = 5.913e-20
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 0
Query:   85 LVILPVSEVRTLEETEEALNGAGSKLVVLDFTATWCGPCKLISPVFEGLSEEISENEAVFLKVDVDVNEETAKKFEVSQMPVYIHLRQKFGSERPTGRCQSRQASRGRLPPSVGKRR 201
            ++++ V  V   E+ +  +  AG KLVV+DF ATWCGPCK I+P  E L +E S N  VFLKVDVD NEE A+ F VS MP +I L+ +   +  +G      A++ +L   V K +
Sbjct:   14 IIVIMVHLVVDKEDYDSQMEAAGEKLVVIDFFATWCGPCKQIAPFIEKLEQENSGN-VVFLKVDVDENEELAQTFNVSCMPTFILLKNRNKVDEFSG------ANQEKLKEMVDKHK 123          
The following BLAST results are available for this feature:
BLAST of EWM26430.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108470|gb|EWM26430.1|0.000e+0100.00thioredoxin-1 [Nannochloropsis gaditana][more]
gi|553187771|ref|XP_005854675.1|2.983e-9281.98thioredoxin-1 [Nannochloropsis gaditana CCMP526] >... [more]
gi|298710531|emb|CBJ25595.1|4.252e-2356.63similar to thioredoxin-like protein [Ectocarpus si... [more]
gi|1061097368|ref|XP_017875381.1|9.355e-2350.60PREDICTED: thioredoxin-2 [Ceratina calcarata][more]
gi|1210521626|dbj|GAX19616.1|1.057e-2158.33thioredoxin 1 [Fistulifera solaris][more]
gi|1210531759|dbj|GAX09726.1|2.067e-2152.53thioredoxin 1 [Fistulifera solaris][more]
gi|675381351|gb|KFM74253.1|1.261e-2048.45Thioredoxin, partial [Stegodyphus mimosarum][more]
gi|1072255288|ref|XP_018412723.1|2.079e-2053.85PREDICTED: thioredoxin-like [Nanorana parkeri][more]
gi|51869053|emb|CAE54136.1|4.211e-2046.08thioredoxin-1, partial [Mesobuthus gibbosus][more]
gi|51869021|emb|CAE54120.1|5.913e-2042.74thioredoxin-1, partial [Mesobuthus cyprius] >gi|51... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4255rna4255Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications