rna4252, rna4252 (mRNA) Nannochloropsis gaditana

Overview
Namerna4252
Unique Namerna4252
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1874
Alignment locationCM002463.1:86759..87647 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100241g6.3010.mrna
Orig protein idgnl|cribi|Naga_100241g6.3010
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:86759..87647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100241g6gene4094Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26426.1cds4242Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4252rna4252-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4252 ID=rna4252|Name=rna4252|organism=Nannochloropsis gaditana|type=mRNA|length=1874bp
TCAGTAAATCAAACTTAATCAAGTTTTTCAGGCATAGCGATACGGAAAAG
AATGTGCGGCTGCCGTTTCCCAGAGTTCAAGAAAAAGTTGCCTCAGCTGA
ATAGCTTATAACGTACTACAGCACAGGCATATGACCCTGAAGGCGCTTTC
CATGCACTTGGCCTGGTCCTCCTCTTCTTCCAGCGATCGACATCCCTTCC
AGCTGTGCACTGGTTTGCCCCCTTTTACTCCGGTGGCGGATACTGTAGTG
AGGTACCTTGTGGGTTTCATCTTTTTCAACACACCTTGCGTGCTAAGGCC
CTCTTTCACGTTTTCCAACCCCACAATCCTTGCCTCCGTTCCTCATCTCT
CGGACGCGCGGGGTCAGGCCATCGGATTCCTCCAAGCACTGACTCTTCAA
AACGTGACTCTGCACATCGAGCAGCACGGTGACAGCGTCAACTATCCTTT
CTTGGACGGCCTGCCGCTAGAAACACGACAGCTCCTCCGGCACGCCGCAG
ACGCCCGACCCCCCCTGGAGGAGAGCATCGTCATATGTCATTCCGAGCCT
GGAGCATGGCATCCTTCCCGATACCCAACCTCGCGCTGTCCTCCTCGCAA
GGCCCTCTACCGCGTGGGCCGGACCATGTTCGAGACCGACCGCCTGCCGT
CGGGGTGGGCGGAGAGGATGAGCCGCGACAAGATGGACGAGATATGGGTG
CCGACGGCCTTCCAGAAGCGGGTTTTCGTGGAAGGAGGGGTGGAGGCCGA
GCGGATCCAGGTGGTAGGCGAGCCCATCGACACTGACTTCTTCTCTCCCG
AGAACCCTGCCCTTCTCTCCCTTCCACAATCCTCCGGCCTCCCTCCCTCC
CTCCCTCCCTCCTCTTTTCTGTACCTGTCCATCTTCAAGTTCGAGGAGAG
GAAAGGTTTTGACCTCCTATTGCGCGCGTATTTCGAAGCATTCGCACCGG
AGGAGGAAGACGTAGCGCTCCTACTGCTCACCAACGCTTACCACAGTTCG
GATGACTTTGAGACCCCCGTGAAAGCGATTGCCAAGGAATACTTCCCCGA
AAAGAAATACCCGGAGGAACTGCCTGCAGTCCACATTATGAGCGGAGCCA
CAGCCCTCCAGCTCCTCGCCCTTTATCAGGCCGCAGACGTCTTCGTCCTC
CCTTCCCGAGGAGAAGGGTGGGGTCGGCCTCATGTAGAGGCAATGGCGAT
GGCCAAACCCGTCATTGCTACCAACTGGTCCGGCCCCACCGAGTTCATGA
CACCCGCCAACAGCTACCCGTTGCACGTTGAGGGATTGGAAGAGGTTCGG
AATGGGCCCTTCAAGGGGCATCGATGGGCGAGTCCTTCTCTCTCCCATTT
AATATCCCTCCTTCAGTATACCTTCAGCCATCAGGAGGAAGGAAGAGAGA
AAGGAAAAGAAGCGAGGCGGGACATGCTGAGACGGTTTTCCCCCGAGGTG
ATGGGTGAGGAAGTCCGCCGCCATTTGGAAAGGATCGAAGAGCAAGTTCG
AATGAGAGAGGGAGAACGGAGGAAGGAGAGCAAAGACGAGCTCTAAAGTC
AAGGAAGAAGGGCTGATTGGAAAGGAGGAACGCGATGAAGCGCTCAAATT
GATCAAGCCTGCCAACAGCCCTTTTTGTGGGGGATCGTATATCGATTACC
CCGTGTGTAAAATCACAACAGTACAGCTTTTTGCGTCTGAAAAGCGACAT
ATGCGAATTCTGATGTCTTTCTCGACTACCATACTTTTGTGCTTGAACTT
GTGAGAAGGATTGTCGCATCCAGGGGGAAGAAAGGGTCATTGGAATGAAG
AAACGTGCCTGACTCATCAACTATCATGTGTCCTATGCTTAGTTCCATCC
ATACTTTGCCGTAGATCGATGCAG
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protein sequence of rna4252

>rna4252-protein ID=rna4252-protein|Name=rna4252|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MRPLSPSSHRALDALLLVATDKEVILHNSNGNVVAETTEIKEREIGTDDE
VSNLERADKKSRGRKEKETEGEQEKAGAEQVEREEDYPYGIREGEAQHGI
LEEGEDGDGPAGLLSDLANEGKTEGKAQAFTSPEVWEKACGMFKGILPLQ
ALYRVYGEAEGLEGAVQVRGGRRAGRRRKGERVSDVKEEVCAEKK
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mRNA from alignment at CM002463.1:86759..87647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4252 ID=rna4252|Name=rna4252|organism=Nannochloropsis gaditana|type=mRNA|length=889bp|location=Sequence derived from alignment at CM002463.1:86759..87647- (Nannochloropsis gaditana)
CTCCAGCAGCAGCAGCACCCTGTGCATGACGATGCAGTTGACACCTTGTT
CGACATCTTTGGAGGACAGATTCCTTTGGGCACCGTGAAGGCTGTGTTGA
ACAGGGAAGGGGGGGAGGTTTCCAGGTAGGGAGGTAGGCAGGTCACTCTA
TCGGCCCCCCGAATAGGATGTGAGATTGAAATTGTTGTTATGCATAATAG
GATAAAAGTAACATATAAAATACTCTGGAGCGCAATATCGGTTGGACAGG
AAAAGAGGGATAAGGCCGAATTAAAAATGGCAGTAATGTTCGAGGGGATT
GATGCGTCCATTGTCTCCGTCATCACACAGGGCATTGGATGCGCTACTTT
TGGTGGCTACGGACAAGGAAGTCATCCTCCATAACAGTAACGGTAACGTT
GTCGCAGAAACGACTGAAATAAAGGAACGTGAGATCGGAACAGACGACGA
AGTCTCGAATTTAGAGAGGGCGGACAAGAAATCGAGAGGGAGGAAGGAGA
AGGAAACCGAAGGGGAGCAAGAAAAGGCAGGGGCGGAGCAGGTGGAAAGG
GAAGAAGACTATCCTTATGGGATTAGAGAGGGAGAGGCTCAGCATGGTAT
CCTCGAAGAAGGGGAGGACGGCGATGGGCCGGCCGGCCTGCTCAGCGATC
TGGCGAATGAGGGAAAGACCGAGGGCAAGGCGCAAGCCTTCACGAGCCCA
GAGGTTTGGGAGAAGGCCTGTGGGATGTTTAAGGGCATCTTACCCTTGCA
GGCGCTGTATAGGGTCTATGGAGAGGCGGAGGGGCTGGAGGGGGCTGTGC
AGGTAAGAGGGGGGAGGAGAGCGGGGAGGAGAAGGAAGGGGGAGAGGGTG
TCTGATGTAAAGGAGGAGGTCTGTGCAGAAAAGAAGTGA
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Coding sequence (CDS) from alignment at CM002463.1:86759..87647-

>rna4252 ID=rna4252|Name=rna4252|organism=Nannochloropsis gaditana|type=CDS|length=588bp|location=Sequence derived from alignment at CM002463.1:86759..87647- (Nannochloropsis gaditana)
ATGCGTCCATTGTCTCCGTCATCACACAGGGCATTGGATGCGCTACTTTT
GGTGGCTACGGACAAGGAAGTCATCCTCCATAACAGTAACGGTAACGTTG
TCGCAGAAACGACTGAAATAAAGGAACGTGAGATCGGAACAGACGACGAA
GTCTCGAATTTAGAGAGGGCGGACAAGAAATCGAGAGGGAGGAAGGAGAA
GGAAACCGAAGGGGAGCAAGAAAAGGCAGGGGCGGAGCAGGTGGAAAGGG
AAGAAGACTATCCTTATGGGATTAGAGAGGGAGAGGCTCAGCATGGTATC
CTCGAAGAAGGGGAGGACGGCGATGGGCCGGCCGGCCTGCTCAGCGATCT
GGCGAATGAGGGAAAGACCGAGGGCAAGGCGCAAGCCTTCACGAGCCCAG
AGGTTTGGGAGAAGGCCTGTGGGATGTTTAAGGGCATCTTACCCTTGCAG
GCGCTGTATAGGGTCTATGGAGAGGCGGAGGGGCTGGAGGGGGCTGTGCA
GGTAAGAGGGGGGAGGAGAGCGGGGAGGAGAAGGAAGGGGGAGAGGGTGT
CTGATGTAAAGGAGGAGGTCTGTGCAGAAAAGAAGTGA
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Synonyms
Publications