rna4250, rna4250 (mRNA) Nannochloropsis gaditana

Overview
Namerna4250
Unique Namerna4250
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1232
Alignment locationCM002463.1:77370..78104 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100395g4.5033.mrna
Orig protein idgnl|cribi|Naga_100395g4.5033
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:77370..78104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100395g4gene4092Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4250rna4250-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26432.1cds4240Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4250 ID=rna4250|Name=rna4250|organism=Nannochloropsis gaditana|type=mRNA|length=1232bp
TCCAACATTCGTATGAAATCCGGAGACCCTTCTTTGGGTTGTAAGATAAG
TCCCAGTAAATTCATCGTTTTCCTTTTAAAGTAGTTTCCACCATTCCCAT
TCTATTGTTGACCATATGTCATGGAGCAGAAGAGCAATGTTTTACGAAAC
CTGAAGCGCATGTCCCTGCGATGCCACGTGACTGACGTGATCGTCCTTTT
CACATGATATGCTTGTATTTTGTTCCTGACAATAATTGTTGCTAAATACC
ACAAGATAAGACACTTCACATTCTTTTACCAGCACCCTTTAATGGGCCTG
CAATAGAGAAATATCTGCGTCCTAGAAGCCAAGTATTGAGACTCAATTTG
CGTTTGATCCTTTTCCTGTCATCTTGTCATCAACATCGAGATTAGTTACT
CTAAGCGGAGGGGCGACTTGACACCAACATGATATGACTTTCCCCCTCAT
CTTCTAGCATGGCGGACAATTATGGGGGCATGCCTGCCTTTATCCGGTGG
CTCTTCTTCTGGTACTTCGTCACCCATATCCCCATCACCCTGTTTATCGA
TGCACAAAGCATCTTCTCGATGTATCATCCTCCAGCTTTCACGAACTTAC
TACGGTGGTATACCGAGACTTACGGAGACTTCCTCATGGCAAACCCCCCT
CCATGGTTCCAAGCAGTAGTCGCCTGTGAGCTAGTGATGCAATTACCCTT
CTTCTTCGTCGCTGCGTATGGATTTTGGACCCAACAAAATTGGCTGCGCC
TCCCATGCATTGTATACGGCTCCCATGTCGCCACCACCCTAGTTCCGATC
CTGGATGCTTTCGCGCGAGCGCCACACCTGTCGCTGGATAAGAAGATCAC
GTTGATCGGGATTTACTCTCCATATTTGCTTGTGCCCGTGATGCTGGTGG
TAATTATGTGGCGAAATGAAAGGCCGTTTGGCATGGGGTTGCCACGTGGG
CATCCTAAGGGAGGAGACGTGAGTAAGTGCCCCTTTGCGAGCATGATGGG
CCTCACCGCTGCGGAGGGCTTGGAGGGGCCGGCACAAGATGACGCAGTTC
GGAAGAAGGAGAGGTGACCCCCCAAATCGATGGTCCCTCACGTCGGGGTG
CGAATCTTGCTTAAAGCACTTACAAATAATTGTGACATATTGCTTCTATG
AAGACATTTAAAATGCATTTGCTTCCCCCGATTGAGAAGCGCTGTACTAC
ATCATTTTCAATCCCTCGTTAGCGCCTCCAAG
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protein sequence of rna4250

>rna4250-protein ID=rna4250-protein|Name=rna4250|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MQPYPKQSSPDQGASFMSFCFYSTISERISELDHFQGGKRCFLRANPMRS
RVLSGRLGRKQRNHYQVPGNSCRRRSSLSLKYHKYCLVVTKTPTKNLHLS
ATRFEGITVFCRLCRKCMARRSVFLSRCRSIESRRRRLRTPAFLKLSASL
QSIIWCLKKGY
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mRNA from alignment at CM002463.1:77370..78104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4250 ID=rna4250|Name=rna4250|organism=Nannochloropsis gaditana|type=mRNA|length=735bp|location=Sequence derived from alignment at CM002463.1:77370..78104+ (Nannochloropsis gaditana)
ACACGCACTCGGTCAATCGGTGTCTGGAACGGAAATTTTGGACGCTTATA
AGAATTCTAAAGGCTTGGGACGCAGCTGCAACCTCGTTTCTTTCGTCACA
CCCTCTAAACAAATATTTTTATGTAAAGTTAACTCCGTAGGAACGTAAGT
CGTAGTGGAAATGTATTACAAATGTGACAGACAAGTCGATGAAGGAAGCT
TTCGGGATTCTTCCCCATCATGCAACCTTATCCAAAGCAATCCAGCCCCG
ACCAAGGTGCCTCTTTCATGAGTTTTTGCTTTTATTCCACTATTTCTGAA
AGAATTTCCGAGCTTGATCACTttcaagggggaaagcgatgCTTTTTGCG
TGCCAATCCTATGCGCTCTCGCGTGCTATCGGGTCGCCTTGGAAGGAAAC
AACGGAATCATTATCAAGTACCTGGAAATTCTTGCCGACGTCGCAGCTCA
TTGTCTCTAAAATATCACAAGTACTGCTTGGTTGTCACTAAAACCCCCAC
GAAAAATCTACATCTGTCTGCGACTCGATTCGAGGGTATTACAGTATTCT
GCCGGCTTTGCAGGAAGTGCATGGCAAGAAGAAGCGTCTTCCTTAGCAGG
TGTCGGTCTATCGAATCACGCAGAAGACGATTAAGAACTCCTGCGTTTTT
AAAGTTAAGTGCATCTTTACAGTCCATCATTTGGTGTTTGAAGAAAGGCT
ACTAATCAAGACAGAAAAACATTTTGTAAACTTCA
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Coding sequence (CDS) from alignment at CM002463.1:77370..78104+

>rna4250 ID=rna4250|Name=rna4250|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002463.1:77370..78104+ (Nannochloropsis gaditana)
ATGCAACCTTATCCAAAGCAATCCAGCCCCGACCAAGGTGCCTCTTTCAT
GAGTTTTTGCTTTTATTCCACTATTTCTGAAAGAATTTCCGAGCTTGATC
ACTttcaagggggaaagcgatgCTTTTTGCGTGCCAATCCTATGCGCTCT
CGCGTGCTATCGGGTCGCCTTGGAAGGAAACAACGGAATCATTATCAAGT
ACCTGGAAATTCTTGCCGACGTCGCAGCTCATTGTCTCTAAAATATCACA
AGTACTGCTTGGTTGTCACTAAAACCCCCACGAAAAATCTACATCTGTCT
GCGACTCGATTCGAGGGTATTACAGTATTCTGCCGGCTTTGCAGGAAGTG
CATGGCAAGAAGAAGCGTCTTCCTTAGCAGGTGTCGGTCTATCGAATCAC
GCAGAAGACGATTAAGAACTCCTGCGTTTTTAAAGTTAAGTGCATCTTTA
CAGTCCATCATTTGGTGTTTGAAGAAAGGCTACTAA
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Synonyms
Publications