rna4249, rna4249 (mRNA) Nannochloropsis gaditana

Overview
Namerna4249
Unique Namerna4249
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2864
Alignment locationCM002463.1:75640..76871 -

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Properties
Property NameValue
Producttransmembrane protein 97
Orig transcript idgnl|cribi|Naga_100395g2.5035.mrna
Orig protein idgnl|cribi|Naga_100395g2.5035
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:75640..76871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100395g2gene4091Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26434.1cds4239Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4249rna4249-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4249 ID=rna4249|Name=rna4249|organism=Nannochloropsis gaditana|type=mRNA|length=2864bp
AGGCCTTCGGTAGGGAGAACCGGAAAGTGCCGGCCCATATGCCCCACCTG
ATCGACAAGGAGCTCGTCACGGAGATGCAAGCACGGTGGAAGGAAGAATG
GGACCGAACCTCCCAGCACCGTTTTCGCGCAGCCGACGACATGCAGTACT
CCTTTTCCTATTTCTACTACCTCATGAATTTGCAGAAAGCCCATCCTCTC
GACCTCAAGGCGTTGTGGTACTCGGATATCGACGTGGACGGCGACGGCTT
CTTGGACGATAATGAGCTGGTCACCCTGGCTGCCCTCGGCATGGGCCGAG
ACCCTACCTATGGCTACCTGATGAAGATCAAGGACTGCATGCTCGGAGGA
GGGAGAAGGGAGGGCCTGAGAGGTGGTGGGGACGGCAGGGAAGGGAGACG
GCGGTTACAGAGGTCAGCGGCTGGGGAAGAGGAACGCCGGGAGGGAGAGA
GGGAGGCAAAGCTTGAGGTAGCTGGATGGGGAAGTGCGCAATTAGAAGAA
AGGGACGCGTTGGGAAGCAGAGGCAAAGACGAGATACGCGGAGGAAGAGG
AGGAGGGGGCGGGGCTGAAGGAGGGGGAGGAAAAGAAGCGGAGGAAGAGG
AGGGAGAAGGAATAGGAGCACCAGGCAGCGGGCCCCTGGAGGAGGAAGAG
GGGGGAGAAGGAGACAAGGAAGGGAGGAAAGAGAGGGAAGGGACGGCGGA
ATCTGGAGATGATGGCGGAGACAGACCGGCAGAGGAGCAAGCCCTTCCCT
CGGAGGAGACCAAGATCTCTTTGGAGCATTTCCTTGGTTGCCAGCAGATC
TTGACAGACTTGGAGAAGAACGTCCGGCGCAAGGGCCCGTGGACGCCAGG
ACCCATCGAAGATGTGCGTCAAGACTGAGAGAGCCTTGTCGATATCGTCA
TCCATCCACGCCCTCACCACTTACCTTTTACCCCCCGCCCCTGCGGCTGT
ATGCCCCTGATTCCTCCTTAACACTGTCGGTTCGACTCCGTTTCTGTCCA
CCTCACGGCCCCTCCCTCGCCGTTTCTCCCTTCCTTCCACCCCAGGTGAC
ATTTGAGATGATCGGTGACGACCTGACCCGGACTCAAGCGGAGCTCAACG
CCATCCGGGCCACACGGACCAAGTTTGTGTGTCTCAACGACGACTTGACA
CGCGACCAGGCCTCCTCGGACACCTTTTTGCTCCTTCAGCACTTCTTCCT
CTCTCTCTTCCCGAACAGGAGCCAATTCGAGCTCCCATTGCACCTGGAGA
ACAGATACCTCTACCTAGACGAGTATCAACGTGCGTATCGAAGGGTGTTT
TTGGCACGGCTTATTTTCGGAGCGAGCAGCCTCGTCCTTCTCGCTTTGAT
CGTGCGCGACTGCCTGTGGGGTACCCCCTCCCTGCCTCCTTCTCCCACGC
CCGCACCTGAAATACCCGAAGGAATGGAATCCCTCCAAGGCCCTCGTCAC
GATGTGGGCCCCACGAAAATGGAGGAGAGCCAAGGGGAGAAGGAGGAGAG
GGAGCGGGAGCGAGAGAGGAAGGAGCGGTGGAACCGCTTGACCTCCACCT
CCCCCTTGATGGCCGCGGCCGCCCTACTCAATCATACAGGGGGGAGGAAA
CGGGGCACTGTCGATGGAACAGGAAAGAGCGAGGGTGGCATGAAGGGGGA
AGAGGCAAGAGAGCACAAAGAGGAGTGAGAGGGTCGTGTACTGGGTCTTG
GAGGCGCTAACGAGGGATTGAAAATGATGTAGTACAGCGCTTCTCAATCG
GGGGAAGCAAATGCATTTTAAATGTCTTCATAGAAGCAATATGTCACAAT
TATTTGTAAGTGCTTTAAGCAAGATTCGCACCCCGACGTGAGGGACCATC
GATTTGGGGGGTCACCTCTCCTTCTTCCGAACTGCGTCATCTTGTGCCGG
CCCCTCCAAGCCCTCCGCAGCGGTGAGGCCCATCATGCTCGCAAAGGGGC
ACTTACTCACGTCTCCTCCCTTAGGATGCCCACGTGGCAACCCCATGCCA
AACGGCCTTTCATTTCGCCACATAATTACCACCAGCATCACGGGCACAAG
CAAATATGGAGAGTAAATCCCGATCAACGTGATCTTCTTATCCAGCGACA
GGTGTGGCGCTCGCGCGAAAGCATCCAGGATCGGAACTAGGGTGGTGGCG
ACATGGGAGCCGTATACAATGCATGGGAGGCGCAGCCAATTTTGTTGGGT
CCAAAATCCATACGCAGCGACGAAGAAGAAGGGTAATTGCATCACTAGCT
CACAGGCGACTACTGCTTGGAACCATGGAGGGGGGTTTGCCATGAGGAAG
TCTCCGTAAGTCTCGGTATACCACCGTAGTAAGTTCGTGAAAGCTGGAGG
ATGATACATCGAGAAGATGCTTTGTGCATCGATAAACAGGGTGATGGGGA
TATGGGTGACGAAGTACCAGAAGAAGAGCCACCGGATAAAGGCAGGCATG
CCCCCATAATTGTCCGCCATGCTAGAAGATGAGGGGGAAAGTCATATCAT
GTTGGTGTCAAGTCGCCCCTCCGCTTAGAGTAACTAATCTCGATGTTGAT
GACAAGATGACAGGAAAAGGATCAAACGCAAATTGAGTCTCAATACTTGG
CTTCTAGGACGCAGATATTTCTCTATTGCAGGCCCATTAAAGGGTGCTGG
TAAAAGAATGTGAAGTGTCTTATCTTGTGGTATTTAGCAACAATTATTGT
CAGGAACAAAATACAAGCATATCATGTGAAAAGGACGATCACGTCAGTCA
CGTGGCATCGCAGGGACATGCGCTTCAGGTTTCGTAAAACATTGCTCTTC
TGCTCCATGACATATGGTCAACAATAGAATGGGAATGGTGGAAACTACTT
TAAAAGGAAAACGA
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protein sequence of rna4249

>rna4249-protein ID=rna4249-protein|Name=rna4249|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MADNYGGMPAFIRWLFFWYFVTHIPITLFIDAQSIFSMYHPPAFTNLLRW
YTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPC
IVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIM
WRNERPFGMGLPRGHPKGGDVSKCPFASMMGLTAAEGLEGPAQDDAVRKK
ER
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mRNA from alignment at CM002463.1:75640..76871-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4249 ID=rna4249|Name=rna4249|organism=Nannochloropsis gaditana|type=mRNA|length=1232bp|location=Sequence derived from alignment at CM002463.1:75640..76871- (Nannochloropsis gaditana)
TCCAACATTCGTATGAAATCCGGAGACCCTTCTTTGGGTTGTAAGATAAG TCCCAGTAAATTCATCGTTTTCCTTTTAAAGTAGTTTCCACCATTCCCAT TCTATTGTTGACCATATGTCATGGAGCAGAAGAGCAATGTTTTACGAAAC CTGAAGCGCATGTCCCTGCGATGCCACGTGACTGACGTGATCGTCCTTTT CACATGATATGCTTGTATTTTGTTCCTGACAATAATTGTTGCTAAATACC ACAAGATAAGACACTTCACATTCTTTTACCAGCACCCTTTAATGGGCCTG CAATAGAGAAATATCTGCGTCCTAGAAGCCAAGTATTGAGACTCAATTTG CGTTTGATCCTTTTCCTGTCATCTTGTCATCAACATCGAGATTAGTTACT CTAAGCGGAGGGGCGACTTGACACCAACATGATATGACTTTCCCCCTCAT CTTCTAGCATGGCGGACAATTATGGGGGCATGCCTGCCTTTATCCGGTGG CTCTTCTTCTGGTACTTCGTCACCCATATCCCCATCACCCTGTTTATCGA TGCACAAAGCATCTTCTCGATGTATCATCCTCCAGCTTTCACGAACTTAC TACGGTGGTATACCGAGACTTACGGAGACTTCCTCATGGCAAACCCCCCT CCATGGTTCCAAGCAGTAGTCGCCTGTGAGCTAGTGATGCAATTACCCTT CTTCTTCGTCGCTGCGTATGGATTTTGGACCCAACAAAATTGGCTGCGCC TCCCATGCATTGTATACGGCTCCCATGTCGCCACCACCCTAGTTCCGATC CTGGATGCTTTCGCGCGAGCGCCACACCTGTCGCTGGATAAGAAGATCAC GTTGATCGGGATTTACTCTCCATATTTGCTTGTGCCCGTGATGCTGGTGG TAATTATGTGGCGAAATGAAAGGCCGTTTGGCATGGGGTTGCCACGTGGG CATCCTAAGGGAGGAGACGTGAGTAAGTGCCCCTTTGCGAGCATGATGGG CCTCACCGCTGCGGAGGGCTTGGAGGGGCCGGCACAAGATGACGCAGTTC GGAAGAAGGAGAGGTGACCCCCCAAATCGATGGTCCCTCACGTCGGGGTG CGAATCTTGCTTAAAGCACTTACAAATAATTGTGACATATTGCTTCTATG AAGACATTTAAAATGCATTTGCTTCCCCCGATTGAGAAGCGCTGTACTAC ATCATTTTCAATCCCTCGTTAGCGCCTCCAAG
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Coding sequence (CDS) from alignment at CM002463.1:75640..76871-

>rna4249 ID=rna4249|Name=rna4249|organism=Nannochloropsis gaditana|type=CDS|length=609bp|location=Sequence derived from alignment at CM002463.1:75640..76871- (Nannochloropsis gaditana)
ATGGCGGACAATTATGGGGGCATGCCTGCCTTTATCCGGTGGCTCTTCTT
CTGGTACTTCGTCACCCATATCCCCATCACCCTGTTTATCGATGCACAAA
GCATCTTCTCGATGTATCATCCTCCAGCTTTCACGAACTTACTACGGTGG
TATACCGAGACTTACGGAGACTTCCTCATGGCAAACCCCCCTCCATGGTT
CCAAGCAGTAGTCGCCTGTGAGCTAGTGATGCAATTACCCTTCTTCTTCG
TCGCTGCGTATGGATTTTGGACCCAACAAAATTGGCTGCGCCTCCCATGC
ATTGTATACGGCTCCCATGTCGCCACCACCCTAGTTCCGATCCTGGATGC
TTTCGCGCGAGCGCCACACCTGTCGCTGGATAAGAAGATCACGTTGATCG
GGATTTACTCTCCATATTTGCTTGTGCCCGTGATGCTGGTGGTAATTATG
TGGCGAAATGAAAGGCCGTTTGGCATGGGGTTGCCACGTGGGCATCCTAA
GGGAGGAGACGTGAGTAAGTGCCCCTTTGCGAGCATGATGGGCCTCACCG
CTGCGGAGGGCTTGGAGGGGCCGGCACAAGATGACGCAGTTCGGAAGAAG
GAGAGGTGA
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Synonyms
Publications