EWM26434.1, cds4239 (CDS) Nannochloropsis gaditana

Overview
NameEWM26434.1
Unique Namecds4239
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:75805..76413 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26434.1
Producttransmembrane protein 97
Orig transcript idgnl|cribi|Naga_100395g2.5035.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:75805..76413 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR016964Transmembrane_6/97
Homology
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|585108475|gb|EWM26434.1| (transmembrane protein 97 [Nannochloropsis gaditana])

HSP 1 Score: 419.468 bits (1077), Expect = 1.764e-148
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MADNYGGMPAFIRWLFFWYFVTHIPITLFIDAQSIFSMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFGMGLPRGHPKGGDVSKCPFASMMGLTAAEGLEGPAQDDAVRKKER 202
            MADNYGGMPAFIRWLFFWYFVTHIPITLFIDAQSIFSMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFGMGLPRGHPKGGDVSKCPFASMMGLTAAEGLEGPAQDDAVRKKER
Sbjct:    1 MADNYGGMPAFIRWLFFWYFVTHIPITLFIDAQSIFSMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFGMGLPRGHPKGGDVSKCPFASMMGLTAAEGLEGPAQDDAVRKKER 202          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|159464018|ref|XP_001690239.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158284227|gb|EDP09977.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 139.428 bits (350), Expect = 1.586e-38
Identity = 70/156 (44.87%), Postives = 98/156 (62.82%), Query Frame = 0
Query:   15 LFFWYFVTHIPITLFIDAQSIF-SMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFGMGLPRGHPKGG 169
            +F  YF+ HIP TL +D+QS+F + Y P      L+W+ +T GD L++  P WF ++V CE  +QLPFFFVAAY F  + NW+R+PCI+YG+HVATT+VPIL     +P         L  IY+PYL +P+ LV+ M  + +PFG    +   K G
Sbjct:   10 IFLAYFIIHIPTTLLVDSQSVFPAEYFPSWAKEALQWHIKTNGDHLVSTNPLWFVSLVWCETALQLPFFFVAAYAFIKRANWIRVPCIIYGAHVATTMVPILTDILFSPAAG-SHSPALAAIYAPYLALPLALVIRMAVSAQPFGSKRSQKRAKSG 164          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|1004147035|gb|KXZ55009.1| (hypothetical protein GPECTOR_3g172 [Gonium pectorale])

HSP 1 Score: 137.887 bits (346), Expect = 7.520e-38
Identity = 69/154 (44.81%), Postives = 103/154 (66.88%), Query Frame = 0
Query:    6 GGMPAFIRWLFFWYFVTHIPITLFIDAQSIF-SMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFG 158
            G + + +  +F  +F+ HIP TL +D+QS+F + Y+PP     L+W+ E  GD L++  P WF ++V  E++ QLPFFFVA+Y F  ++NW+R+P I+YG+HV TT++PIL      P  S  K+ TL  IY PYL+VP++L+V M   E+PFG
Sbjct:    2 GALTSVLDVIFLAFFIIHIPTTLLVDSQSVFPAEYYPPWAKEALKWHIEMNGDHLVSKNPTWFVSLVWGEVLYQLPFFFVASYAFIKRRNWIRVPSIIYGAHVVTTMIPILTDILFGPD-SGPKRHTLAAIYVPYLIVPLLLLVRMAVVEQPFG 154          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|302853276|ref|XP_002958154.1| (hypothetical protein VOLCADRAFT_108000 [Volvox carteri f. nagariensis] >gi|300256515|gb|EFJ40779.1| hypothetical protein VOLCADRAFT_108000 [Volvox carteri f. nagariensis])

HSP 1 Score: 137.502 bits (345), Expect = 1.064e-37
Identity = 78/154 (50.65%), Postives = 111/154 (72.08%), Query Frame = 0
Query:    6 GGMPAFIRWLFFWYFVTHIPITLFIDAQSIF-SMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFG 158
            G + + +  +F  YF+ HIP T+ +D+QS+  + Y P     LL+W+ +T GD L+++ P WF ++VACE+++QLPFFFVA+Y F  ++NW+R+PCIVYGSHVATT+VPIL  F  +P     K++TL+ IY PYL+VPV+LVV M   ERPFG
Sbjct:    2 GLLTSVLDRIFLAYFILHIPTTVIVDSQSVVPAQYFPSWAKELLQWHIKTNGDHLVSSNPLWFVSLVACEILLQLPFFFVASYAFLKRRNWIRIPCIVYGSHVATTMVPILSEFLFSPEAG-PKRLTLVSIYLPYLVVPVLLVVRMAVVERPFG 154          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|923125288|ref|XP_013756112.1| (transmembrane protein 97 [Thecamonas trahens ATCC 50062] >gi|906558207|gb|KNC51450.1| transmembrane protein 97 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 135.961 bits (341), Expect = 3.827e-37
Identity = 75/154 (48.70%), Postives = 97/154 (62.99%), Query Frame = 0
Query:   15 LFFWYFVTHIPITLFIDAQS--IFSMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPH--------LSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFG 158
            +F  YF  HIP T  IDAQ   + +   P     LL ++ ET+ D L+A+PP WF ++V CE ++QLPFFFVA Y F  ++NW+R+P I+YG+HVATTLVPIL   A A          L+ + + TLI IY PYLLVP+ LVV M   E PFG
Sbjct:    7 VFLVYFAVHIPTTALIDAQCLPVVAELVPGFAKELLAYHVETFHDPLVADPPRWFVSLVVCEALLQLPFFFVAVYAFVAKRNWIRIPAIIYGAHVATTLVPILAEIAYAEPKADSPGGVLTPELRATLIAIYIPYLLVPITLVVRMACAEHPFG 160          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|831295577|ref|XP_012679539.1| (PREDICTED: transmembrane protein 97 [Clupea harengus])

HSP 1 Score: 135.191 bits (339), Expect = 1.075e-36
Identity = 70/146 (47.95%), Postives = 99/146 (67.81%), Query Frame = 0
Query:   15 LFFWYFVTHIPITLFIDAQSIFSMY-HPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQ-NWLRLPCIVYGSHVATTLVPILD-----AFARAPH---LSLDKKITLIGIYSPYLLVPVMLVVIM 150
            ++F YF +HIPITLFID Q++   + +P A   L+RWY   + D +M +PP WF++ + CE ++QLPFF VAAY FW     W+R P IVY +HVATTLVPIL       F +APH    ++ +++TL+ IY+PYL+VP+ML+  M
Sbjct:    9 IYFLYFASHIPITLFIDFQALLPEHVYPQALKQLMRWYAAEFKDPMMLDPPVWFKSFILCEALVQLPFFPVAAYAFWKGGCKWIRTPAIVYSTHVATTLVPILSYVLLHQFPQAPHPGPQTMRERLTLVSIYAPYLIVPIMLLFTM 154          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|524914096|ref|XP_005111867.1| (PREDICTED: transmembrane protein 97-like [Aplysia californica])

HSP 1 Score: 134.806 bits (338), Expect = 1.353e-36
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = 0
Query:    8 MPAFIRWLFFWYFVTHIPITLFIDAQSIF-SMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQN---WLRLPCIVYGSHVATTLVPI-----LDAFARAPH---LSLDKKITLIGIYSPYLLVPVMLVV 148
            MP  +  LFF+YF THIPIT+FID Q++    Y P     L  WY   + D +M +PP WFQA V CE ++QLPFFFVAAYGF+       WLR PC+VYGSHVATTL+PI     L  F+   H    +++++ TLI IY PY   P+ +++
Sbjct:    1 MPRLLDILFFFYFFTHIPITIFIDLQALLPQKYFPQKTVELKDWYCLHFRDPMMVDPPTWFQAFVGCEFLVQLPFFFVAAYGFFKGAEKCPWLRWPCVVYGSHVATTLIPIISHILLHDFSTGKHPGPRNMEERFTLISIYCPYFFFPLFIML 153          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|929752243|ref|XP_014151104.1| (hypothetical protein SARC_10331 [Sphaeroforma arctica JP610] >gi|906944714|gb|KNC77202.1| hypothetical protein SARC_10331 [Sphaeroforma arctica JP610])

HSP 1 Score: 130.954 bits (328), Expect = 2.918e-35
Identity = 63/140 (45.00%), Postives = 91/140 (65.00%), Query Frame = 0
Query:   19 YFVTHIPITLFIDAQSIFSMYHPPAF-TNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQNWLRLPCIVYGSHVATTLVPILDAFARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPF 157
            YF +HIPITL +D+Q+I      P F   +  WY +T+ D LMA+PP WFQ+ +ACEL+ Q+P FF+A YG+W + NW+R P +VYG+HV TTLVP+L    R   +   +K+ L   Y PYL++P ++ + M+    PF
Sbjct:   14 YFASHIPITLLMDSQAIVPPVWIPDFAVEMNSWYIKTFNDPLMASPPIWFQSFIACELIFQIPIFFLAVYGYWNRCNWIRDPLMVYGAHVTTTLVPVLYELYRNDQVEDGQKLVLAAFYIPYLIIPFLITLRMFMCTVPF 153          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|1025120348|ref|XP_016412633.1| (PREDICTED: transmembrane protein 97-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 130.183 bits (326), Expect = 9.825e-35
Identity = 73/172 (42.44%), Postives = 102/172 (59.30%), Query Frame = 0
Query:   12 IRWLFFWYFVTHIPITLFIDAQSIFSMY-HPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQ-NWLRLPCIVYGSHVATTLVPIL-----DAFARAPH---LSLDKKITLIGIYSPYLLVPVMLVVIMWRNERPFGMGLPRGHPKGGDVSK 173
            +  +FF+YF++HIPITL ID Q +   + +P    NLL WY   + D +M +PP WF++ V CE + QLPFF +AAY F T    W+R P I+Y  HVATTL+PIL     + F  APH    +L +++TL+ IY+PYL++PVM++  M      F         KG   SK
Sbjct:    6 LEIIFFFYFLSHIPITLMIDLQPLLPEHLYPSKLKNLLHWYAAEFKDPMMMDPPVWFKSFVFCEALFQLPFFPIAAYAFMTGGCKWIRTPAIIYSVHVATTLIPILSHVLFNNFPLAPHPGPQTLQERLTLVSIYAPYLIIPVMILFTML-----FSSTYNSTSSKGNASSK 172          
BLAST of EWM26434.1 vs. NCBI_GenBank
Match: gi|355753848|gb|EHH57813.1| (Protein MAC30 [Macaca fascicularis])

HSP 1 Score: 129.413 bits (324), Expect = 1.594e-34
Identity = 68/163 (41.72%), Postives = 99/163 (60.74%), Query Frame = 0
Query:    7 GMPA---FIRWLFFWYFVTHIPITLFIDAQSIFSMYHPPAFTNLLRWYTETYGDFLMANPPPWFQAVVACELVMQLPFFFVAAYGFWTQQ-NWLRLPCIVYGSHVATTLVPILDAF------------ARAPHLSLDKKITLIGIYSPYLLVPVMLVVIMWRN 153
            G+PA    + WL   YF++HIPITLF+D Q++    +P  F NLL+WY + + D L+  PP WF++ + CELV QLPFF +A Y F      W+R P I+Y  H  TTL+PIL  F             + P  +L +++TLI +Y+PYLL+P +L++ M R+
Sbjct:    2 GVPATRRCVEWLLGIYFLSHIPITLFMDLQAVPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFKSFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFLFEDFSKASGFKGQRPE-TLHERLTLISVYAPYLLIPFILLIFMLRS 163          
The following BLAST results are available for this feature:
BLAST of EWM26434.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108475|gb|EWM26434.1|1.764e-148100.00transmembrane protein 97 [Nannochloropsis gaditana... [more]
gi|159464018|ref|XP_001690239.1|1.586e-3844.87predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|1004147035|gb|KXZ55009.1|7.520e-3844.81hypothetical protein GPECTOR_3g172 [Gonium pectora... [more]
gi|302853276|ref|XP_002958154.1|1.064e-3750.65hypothetical protein VOLCADRAFT_108000 [Volvox car... [more]
gi|923125288|ref|XP_013756112.1|3.827e-3748.70transmembrane protein 97 [Thecamonas trahens ATCC ... [more]
gi|831295577|ref|XP_012679539.1|1.075e-3647.95PREDICTED: transmembrane protein 97 [Clupea hareng... [more]
gi|524914096|ref|XP_005111867.1|1.353e-3647.71PREDICTED: transmembrane protein 97-like [Aplysia ... [more]
gi|929752243|ref|XP_014151104.1|2.918e-3545.00hypothetical protein SARC_10331 [Sphaeroforma arct... [more]
gi|1025120348|ref|XP_016412633.1|9.825e-3542.44PREDICTED: transmembrane protein 97-like [Sinocycl... [more]
gi|355753848|gb|EHH57813.1|1.594e-3441.72Protein MAC30 [Macaca fascicularis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4249rna4249Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications