rna4248, rna4248 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4248
Unique Name	rna4248
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	970
Alignment location	CM002463.1:72749..76807 +

Link to JBrowse

Properties


Property Name	Value
Product	n-acetylglucosamine-1-phosphotransferase subunits alpha beta
Orig transcript id	gnl\|cribi\|Naga_100395g1.5034.mrna
Orig protein id	gnl\|cribi\|Naga_100395g1.5034
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:72749..76807 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100395g1	gene4090	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4248	rna4248-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26433.1	cds4238	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:72749..76807+
coding sequence from alignment at CM002463.1:72749..76807+

mRNA sequence

>rna4248 ID=rna4248|Name=rna4248|organism=Nannochloropsis gaditana|type=mRNA|length=970bp
ATGTCTTTCCTCCCACTTTTCCCAAATTTGCATCGCTTTCGCCCCAATTT
TTCCTTTCAGTCCGCAGTGCTCTCGTGCGCCCTTTCCTTCCCACATCGCC
TCGTTTCTCCCTCCCTTTCCCCCGCCCTCCCCCCGGCCTTCCTCCAGGTC
ACCCTGCATCCCTTCCCTCTCCTCTCCTCCGCCCTGGGGTCCGACTCTCT
CGGCCAACCCAGCGATGACGACACTGGCGACAGCCTGCCCTCCCTCCCCC
CCTCCCTCCCGCCGCGACTCGCCGAGGGCATCGTCTTGACCTTCCATGCA
GGGTCAGAGTTCCCTTCCTCACCCCCTTCTTCCCTACCTCCAGAGCAGCT
GTCTTCGGCGCGCGTCCTCTTCGTCCTGTACAACCAGCAACTTGAGACTG
TCTATAAAGCCACCTATCCCTTGGCCTACCTCCTTCCCTCCCTCCCTCCC
TCCCTCCCTCAAAGGGAGGGGAAGGCCCTTTACTTTTGGATGGGAGGCAG
GACGGAGGACAGGCAAGGGAGGGGGTAGGAGGGAGGAAGGGGGAAGAGGA
AGGAACTAATCCTCCTCCTTCCTTTTCCAGCTGACGTGCAGGGGAAGAAA
CAGTGGGTGCATGGACAGGTGAGGAGAGAGGGCGGGGGGAGGGCCGGGGG
AAGGGGGGCGGAGGGAACAGAGACGAGAGGCGTCGTTCCTGCGTTTATGA
TACGATAACCTTCTTTATTTAAGGCGCAGGTGTTCTTTGTTTTCCGTACT
CACGCTCCCTCCCACCCTAGGTAACCCTCCTGCTTCCCTCCCCCTCGGCG
CCGAAGGAAGACATGGATGGGACCCCGGGTGGGCCGCAGGGGAGGGGGAC
GAAGCGCGTCCGTGGTCAAGAGCGTGACCCCCCTCCCTCCCTCCCTCCCT
CTCTCCTCCCCTCCGACCTCTCGGCGGAATTTTTCGTCTACTGGGGAAAT
AGCACAGAAGTAGAGGGGGA

protein sequence of rna4248

>rna4248-protein ID=rna4248-protein|Name=rna4248|organism=Nannochloropsis gaditana|type=polypeptide|length=279bp
MPHLIDKELVTEMQARWKEEWDRTSQHRFRAADDMQYSFSYFYYLMNLQK
AHPLDLKALWYSDIDVDGDGFLDDNELVTLAALGMGRDPTYGYLMKIKDC
MLGGGRREGLRGGGDGREGRRRLQRSAAGEEERREGEREAKLEVAGWGSA
QLEERDALGSRGKDEIRGGRGGGGGAEGGGGKEAEEEEGEGIGAPGSGPL
EEEEGGEGDKEGRKEREGTAESGDDGGDRPAEEQALPSEETKISLEHFLG
CQQILTDLEKNVRRKGPWTPGPIEDVRQD

mRNA from alignment at CM002463.1:72749..76807+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4248 ID=rna4248|Name=rna4248|organism=Nannochloropsis gaditana|type=mRNA|length=4059bp|location=Sequence derived from alignment at CM002463.1:72749..76807+ (Nannochloropsis gaditana)
AGGCCTTCGGTAGGGAGAACCGGAAAGTGCCGGCCCATATGCCCCACCTG
ATCGACAAGGAGCTCGTCACGGAGATGCAAGcacggtggaaggaaggtag
gggaggatgggggagagggggagggaccggtgagagggaaaagagaagca
AAGATACGAAAAGGCACCTCTGGCACGCGTCAATTGGATGGAGAGTGTCG
GGAAATCCTATGTATTGCAGATATTCCGCCCTTTGAAAGTTATTCGCAAC
TGATCCAGAACCcctaaccctccctccctgaccctctccctccatccctt
tctccccgcccctctccctccatccctcactCTCTCTCTGCGCTCAGAAT
GGGACCGAACCTCCCAGCACCGTTTTCGCGCAGCCGACGACATGCAGTAC
TCCTTTTCCTATTTCTACTACCTCATGAATTTGCAGAAAGCCCATCCTCT
CGACCTCAAGGTAAAGTCTGCCCGcccaatcctccctccctcccccttgg
ccGTTGTCCCCCTTCTCGGAATCATCACCCAtccattcccctccctcccg
cttgaAATCTctcgtccttcctctccctcctacccttcCGTCACCCCACG
TCGGACTCTTTTTCAGGCGTTGTGGTACTCGGATATCGACGTGGACGGCG
ACGGCTTCTTGGACGATAATGAGGTAAGTGAACCTCtcattcttcccctc
tcccgtcTCACgccagcctttcctcctttttctcgccCTCTATCCCCTTG
CCTGaatcctctttttccctccttctgtcATTTTGCGGTCGGTTTCTCAT
CTTTCCtatcatcttcctccctcttcccactccccctccttcctcagctG
GTCACCCTGGCTGCCCTCGGCATGGGCCGAGACCCTACCTATGGCTACCT
GATGAAGATCAAGGACTGCAtgctcggaggagggagaagggagggcctga
gaggtggtggggacggcagggaagggagacggcGGTTACAGAGGTCAGCG
GctggggaagaggaacgccgggagggagagagggaggcaaagctTGAGGT
AGCTGGATGGGGAAGTGCGCAATTAGAAGAAAGGGACGCGTTGGGAAGCA
GAGGCAAAGACGAGAtacgcggaggaagaggaggagggggcggggctgaa
ggagggggaggaaaagaagcggaggaagaggagggagaaggaataGGAGC
ACCAGGCAGCGggcccctggaggaggaagaggggggagaaggagacaagg
aagggaggaaagagagggaagggacggcgGAATCTGGAGATGATGGCGGA
GACAGACCGGCAGAGGAGCAAGCCCTTCCCTCGGAGGAGACCAAGATCTC
TTTGGAGCATTTCCTTGGTTGCCAGCAGGTGGGGTCTGTAAGGGTATTTT
CCGTCAATCtgtgtcgtcttcctcccctcctttcgacCTCATCCTTGTCG
TCGTCTCACCCGtctgtccttccttctgtgggcatttcctctccttccag
tGGCCATTGCCCGTTTTCGTACTGGGTAttcctgctccctttccttcctc
tcccttctgaGCCCCAAACCACGAGAGTGGTCTtgcccccgctttccctc
gctTCTCACTCTTTTCTCTTCAACCAGATCTTGACAGACTTGGAGAAGAA
CGTCCGGCGCAAGGGCCCGTGGACGCCAGGACCCATCGAAGATGTGCGTC
AAGACTGAGAGAGCCTTGTCGATATCGTCATCCATCCACGCCCTCACCAC
TTACCTTTtaccccccgcccctgcggCTGTATGCCCCTGATTCCTCCTTA
ACACTGTCGGTTCGACTCCGTTTCTGTCCACCtcacggcccctccctcgc
cgtttctcccttccttccaccccagGTGACATTTGAGATGATCGGTGACG
ACCTGACCCGGACTCAAGCGGAGGTCAGTCTCCTCGCAGCGCGAAGCTTC
TTGCGCCCGCCCCggattccctccttttcttctcctgtgctcggctttct
cctctccctttcccacctgcgCCGCGGCCCTTGGCCGTCCTGGtcaccct
ttttccctcttcttacAGCCATCCATCCTGCCTTCACAccgcccgcttcc
cctcctctctccctgatccccctctctctcctttccgtccctcctaGCTC
AACGCCATCCGGGCCACACGGACCAAGTTTGTGTGTCTCAACGACGACTT
GACACGCGACCAGGCCTCCTCGGACACCTTTTTGCTCCTTCAgcacttct
tcctctctctcttcccgaACAGGAGCCAATTCGAGCTCCCATTGCACCTG
GAGAACAGGTATTATGAGTAGCGAGCCGATCGCACCGGGGCTGGGGATGG
GCTGGTCAGAGCTGTTTGTTAGCATCGCAATCGATCGATTTTTTGCCagt
tttcctccctccccctcaatctttcctttttgcttccccgccctgccaGA
TACCTCTACCTAGACGAGTATCAACGTGCGTATCGAAGGGTGTTTTTGGC
ACGGCTTATTTTCGGAGCGAGcagcctcgtccttctcgcttTGATCGTGC
GCGACTGCCTGTGGGgtaccccctccctgcctccttctcccacgcccGCA
CCTGAAATACCCGAAGGAATGGAAtccctccaaggccctcgTCACGATGT
GGGCCCCacgaaaatggaggagagccaaggggagaaggaggagagggagc
gggagcgagagaggaaggagcggtggAACCGCTtgacctccacctccccc
ttgatggccgcggccgccctACTCAATCAtacaggggggaggaaacgggg
cACTGTCGATGGAACAGGAAAGAGCGAGGGTGGcatgaagggggaagagg
caagaGAGCACAAAGAGGAGTGAGAGGGTCGTGTACTGGGTCTTGGAGGC
GCTAACGAGGGATTGAAAATGATGTAGTACAGCGCTTCTCAATCGGGGGA
AGCAAATGCATTTTAAATGTCTTCATAGAAGCAATATGTCACAATTATTT
GTAAGTGCTTTAAGCAAGATTCGCACCCCGACGTGAGGGACCATCGATTT
GGGGGGtcacctctccttcttccgaACTGCGTCATCTTGTGCCGgcccct
ccaagccctccgcaGCGGTGAGGCCCATCATGCTCGCAAAGGGGCACTTA
CTCACGTCTCCTCCCTTAGGATGCCCACGTGGCAACCCCATGCCAAACGG
CCTTTCATTTCGCCACATAATTACCACCAGCATCACGGGCACAAGCAAAT
ATGGAGAGTAAATCCCGATCAACGTGATCTTCTTATCCAGCGACAGGTGT
GGCGCTCGCGCGAAAGCATCCAGGATCGGAACTAGGGTGGTGGCGACATG
GGAGCCGTATACAATGCATGGGAGGCGCAGCCAATTTTGTTGGGTCCAAA
ATCCATACGcagcgacgaagaagaagggtaATTGCATCACTAGCTCACAG
GCGACTACTGCTTGGAACCATGGAGGGGGGTTTGCCATGAGGAAGTCTCC
GTAAGTCTCGGTATACCACCGTAGTAAGTTCGTGAAAGCTGGAGGATGAT
ACATCGAGAAGATGCTTTGTGCATCGATAAACAGGGTGATGGGGATATGG
GTGACGAAGTACCAGAAGAAGAGCCACCGGATAAAGGCAGGCATGCCCCC
ATAATTGTCCGCCATGCTAGAAGATGAGGGGGAAAGTCATATCATGTTGG
TGTCAAGTCGCCCCTCCGCTTAGAGTAACTAATCTCGATGTTGATGACAA
GATGACAGGAAAAGGATCAAACGCAAATTGAGTCTCAATACTTGGCTTCT
AGGACGCAGATATTTCTCTATTGCAGGCCCATTAAAGGGTGCTGGTAAAA
GAATGTGAAGTGTCTTATCTTGTGGTATTTAGCAACAATTATTGTCAGGA
ACAAAATACAAGCATATCATGTGAAAAGGACGATCACGTCAGTCACGTGG
CATCGCAGGGACATGCGCTTCAGGTTTCGTAAAACATTGCTCTTCTGCTC
CATGACATATGGTCAACAATAGAATGGGAATGGTGGAAACTACTTTAAAA
GGAAAACGA

Coding sequence (CDS) from alignment at CM002463.1:72749..76807+

>rna4248 ID=rna4248|Name=rna4248|organism=Nannochloropsis gaditana|type=CDS|length=4200bp|location=Sequence derived from alignment at CM002463.1:72749..76807+ (Nannochloropsis gaditana)
ATGCCCCACCTGATCGACAAGGAGCTCGTCACGGAGATGCAAGcacggtg
gaaggaagAATGGGACCGAACCTCCCAGCACCGTTTTCGCGCAGCCGACG
ACATGCAGTACTCCTTTTCCTATTTCTACTACCTCATGAATTTGCAGAAA
GCCCATCCTCTCGACCTCAAGGCGTTGTGGTACTCGGATATCGACGTGGA
CGGCGACGGCTTCTTGGACGATAATGAGctGGTCACCCTGGCTGCCCTCG
GCATGGGCCGAGACCCTACCTATGGCTACCTGATGAAGATCAAGGACTGC
Atgctcggaggagggagaagggagggcctgagaggtggtggggacggcag
ggaagggagacggcGGTTACAGAGGTCAGCGGctggggaagaggaacgcc
gggagggagagagggaggcaaagctTGAGGTAGCTGGATGGGGAAGTGCG
CAATTAGAAGAAAGGGACGCGTTGGGAAGCAGAGGCAAAGACGAGAtacg
cggaggaagaggaggagggggcggggctgaaggagggggaggaaaagaag
cggaggaagaggagggagaaggaataGGAGCACCAGGCAGCGggcccctg
gaggaggaagaggggggagaaggagacaaggaagggaggaaagagaggga
agggacggcgGAATCTGGAGATGATGGCGGAGACAGACCGGCAGAGGAGC
AAGCCCTTCCCTCGGAGGAGACCAAGATCTCTTTGGAGCATTTCCTTGGT
TGCCAGCAGATCTTGACAGACTTGGAGAAGAACGTCCGGCGCAAGGGCCC
GTGGACGCCAGGACCCATCGAAGATGTGCGTCAAGACTGAATGCCCCACC
TGATCGACAAGGAGCTCGTCACGGAGATGCAAGcacggtggaaggaagAA
TGGGACCGAACCTCCCAGCACCGTTTTCGCGCAGCCGACGACATGCAGTA
CTCCTTTTCCTATTTCTACTACCTCATGAATTTGCAGAAAGCCCATCCTC
TCGACCTCAAGGCGTTGTGGTACTCGGATATCGACGTGGACGGCGACGGC
TTCTTGGACGATAATGAGctGGTCACCCTGGCTGCCCTCGGCATGGGCCG
AGACCCTACCTATGGCTACCTGATGAAGATCAAGGACTGCAtgctcggag
gagggagaagggagggcctgagaggtggtggggacggcagggaagggaga
cggcGGTTACAGAGGTCAGCGGctggggaagaggaacgccgggagggaga
gagggaggcaaagctTGAGGTAGCTGGATGGGGAAGTGCGCAATTAGAAG
AAAGGGACGCGTTGGGAAGCAGAGGCAAAGACGAGAtacgcggaggaaga
ggaggagggggcggggctgaaggagggggaggaaaagaagcggaggaaga
ggagggagaaggaataGGAGCACCAGGCAGCGggcccctggaggaggaag
aggggggagaaggagacaaggaagggaggaaagagagggaagggacggcg
GAATCTGGAGATGATGGCGGAGACAGACCGGCAGAGGAGCAAGCCCTTCC
CTCGGAGGAGACCAAGATCTCTTTGGAGCATTTCCTTGGTTGCCAGCAGA
TCTTGACAGACTTGGAGAAGAACGTCCGGCGCAAGGGCCCGTGGACGCCA
GGACCCATCGAAGATGTGCGTCAAGACTGAATGCCCCACCTGATCGACAA
GGAGCTCGTCACGGAGATGCAAGcacggtggaaggaagAATGGGACCGAA
CCTCCCAGCACCGTTTTCGCGCAGCCGACGACATGCAGTACTCCTTTTCC
TATTTCTACTACCTCATGAATTTGCAGAAAGCCCATCCTCTCGACCTCAA
GGCGTTGTGGTACTCGGATATCGACGTGGACGGCGACGGCTTCTTGGACG
ATAATGAGctGGTCACCCTGGCTGCCCTCGGCATGGGCCGAGACCCTACC
TATGGCTACCTGATGAAGATCAAGGACTGCAtgctcggaggagggagaag
ggagggcctgagaggtggtggggacggcagggaagggagacggcGGTTAC
AGAGGTCAGCGGctggggaagaggaacgccgggagggagagagggaggca
aagctTGAGGTAGCTGGATGGGGAAGTGCGCAATTAGAAGAAAGGGACGC
GTTGGGAAGCAGAGGCAAAGACGAGAtacgcggaggaagaggaggagggg
gcggggctgaaggagggggaggaaaagaagcggaggaagaggagggagaa
ggaataGGAGCACCAGGCAGCGggcccctggaggaggaagaggggggaga
aggagacaaggaagggaggaaagagagggaagggacggcgGAATCTGGAG
ATGATGGCGGAGACAGACCGGCAGAGGAGCAAGCCCTTCCCTCGGAGGAG
ACCAAGATCTCTTTGGAGCATTTCCTTGGTTGCCAGCAGATCTTGACAGA
CTTGGAGAAGAACGTCCGGCGCAAGGGCCCGTGGACGCCAGGACCCATCG
AAGATGTGCGTCAAGACTGAATGCCCCACCTGATCGACAAGGAGCTCGTC
ACGGAGATGCAAGcacggtggaaggaagAATGGGACCGAACCTCCCAGCA
CCGTTTTCGCGCAGCCGACGACATGCAGTACTCCTTTTCCTATTTCTACT
ACCTCATGAATTTGCAGAAAGCCCATCCTCTCGACCTCAAGGCGTTGTGG
TACTCGGATATCGACGTGGACGGCGACGGCTTCTTGGACGATAATGAGct
GGTCACCCTGGCTGCCCTCGGCATGGGCCGAGACCCTACCTATGGCTACC
TGATGAAGATCAAGGACTGCAtgctcggaggagggagaagggagggcctg
agaggtggtggggacggcagggaagggagacggcGGTTACAGAGGTCAGC
GGctggggaagaggaacgccgggagggagagagggaggcaaagctTGAGG
TAGCTGGATGGGGAAGTGCGCAATTAGAAGAAAGGGACGCGTTGGGAAGC
AGAGGCAAAGACGAGAtacgcggaggaagaggaggagggggcggggctga
aggagggggaggaaaagaagcggaggaagaggagggagaaggaataGGAG
CACCAGGCAGCGggcccctggaggaggaagaggggggagaaggagacaag
gaagggaggaaagagagggaagggacggcgGAATCTGGAGATGATGGCGG
AGACAGACCGGCAGAGGAGCAAGCCCTTCCCTCGGAGGAGACCAAGATCT
CTTTGGAGCATTTCCTTGGTTGCCAGCAGATCTTGACAGACTTGGAGAAG
AACGTCCGGCGCAAGGGCCCGTGGACGCCAGGACCCATCGAAGATGTGCG
TCAAGACTGAATGCCCCACCTGATCGACAAGGAGCTCGTCACGGAGATGC
AAGcacggtggaaggaagAATGGGACCGAACCTCCCAGCACCGTTTTCGC
GCAGCCGACGACATGCAGTACTCCTTTTCCTATTTCTACTACCTCATGAA
TTTGCAGAAAGCCCATCCTCTCGACCTCAAGGCGTTGTGGTACTCGGATA
TCGACGTGGACGGCGACGGCTTCTTGGACGATAATGAGctGGTCACCCTG
GCTGCCCTCGGCATGGGCCGAGACCCTACCTATGGCTACCTGATGAAGAT
CAAGGACTGCAtgctcggaggagggagaagggagggcctgagaggtggtg
gggacggcagggaagggagacggcGGTTACAGAGGTCAGCGGctggggaa
gaggaacgccgggagggagagagggaggcaaagctTGAGGTAGCTGGATG
GGGAAGTGCGCAATTAGAAGAAAGGGACGCGTTGGGAAGCAGAGGCAAAG
ACGAGAtacgcggaggaagaggaggagggggcggggctgaaggaggggga
ggaaaagaagcggaggaagaggagggagaaggaataGGAGCACCAGGCAG
CGggcccctggaggaggaagaggggggagaaggagacaaggaagggagga
aagagagggaagggacggcgGAATCTGGAGATGATGGCGGAGACAGACCG
GCAGAGGAGCAAGCCCTTCCCTCGGAGGAGACCAAGATCTCTTTGGAGCA
TTTCCTTGGTTGCCAGCAGATCTTGACAGACTTGGAGAAGAACGTCCGGC
GCAAGGGCCCGTGGACGCCAGGACCCATCGAAGATGTGCGTCAAGACTGA

Synonyms

Publications