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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100344g5.10757.mrna |
| Orig protein id | gnl|cribi|Naga_100344g5.10757 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:66258..68361 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4246 ID=rna4246|Name=rna4246|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp
CTGCCAGGGGATTTTGTGGCAGGTGTGAGGCCTTGCACCTTCCCCGCTTG
TCTTCCATTGAAGCGGAAGTATTTGCCATTGATCCCTCGTTTTTTCAGCA
AGTGTTGAACAATTTCGGAACAGATACATCTCCACCGGGCACAGTACGGG
CTCACATATGGAGTCCTCAAGCCTCTGGGATGCATGCACTTGGAAGCGTC
TGCGAATCCGTAGAAGAGCCAACGCATCCTCTTCCTGCTTCCACTGCGTC
GCCACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGAAGC
CTTTGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATGG
TACACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTTTTG
CTTCATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTAC
TGGGAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGATCA
CTCAAAGCTACATTGAACAAGTGCGCGACGCGATCCCAGTGAAGACGATT
CGCGGCGTTTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTG
CAAAGGCAGGATCAAGATGCGAGGCTTCGTGGAGGAGCCCAACAAAGGCA
CCTTGGAGTACACGGGCTGCAACGACGGGAAGGGGAAAGGTAACTGGCTG
CTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCTTCTCGGCCCGGTG
AGTTCCCCGATCCGATCCTCTGCCCATGCCGCCGCCTCCCTCCTTCTCTC
TTGTCCTCCGTCCCTTCCTCCCCGTTGCCATCCCAAAACTCGATTTCCCT
CGACAAGGATACAGCTTTCTCTCCTCTTCCCCCCTGTCCTTCTCACGTCT
TTCTCCCTTTCTCTTTCCCTCTTTTCCTCTTCAATTCTTTTTCACGCTAT
TAAGAATAACCCGCCCCCCTCACATTCTCTATCGCACTCTCATCTTCTTC
CTTCCCGCCCGTCGTCTGTACCTCGCCTCTCTCTCCTCGCTCCCGGACCT
TAGATGGAAAGTCCGCTTCTCCGACGGCGAGTCGCTCATCTACCGGGGAG
ACGTCTTGGCTGGCGGGAACTACGCCAAGGCCTCTGCCTCCATCACGGAC
GGCGAGATCCTCAAGCCCTTCACTGGGATCACTGGGAATTTGTCGGAAAA
GAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGTCAGTGATGACGAGG
AAAAGCTGTAATGCAGGGCCTTAAAGAACAAATAACAACTTTTCAAATTG back to topprotein sequence of rna4246 >rna4246-protein ID=rna4246-protein|Name=rna4246|organism=Nannochloropsis gaditana|type=polypeptide|length=265bp
MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFV
LPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGN
VGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKG
RIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSARWKV
RFSDGESLIYRGDVLAGGNYAKASASITDGEILKPFTGITGNLSEKKVGT
FEADLIQVSDDEEKL back to topmRNA from alignment at CM002463.1:66258..68361- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4246 ID=rna4246|Name=rna4246|organism=Nannochloropsis gaditana|type=mRNA|length=2104bp|location=Sequence derived from alignment at CM002463.1:66258..68361- (Nannochloropsis gaditana)
CCCGCTTGTCTTCCATTGAAGCGGAAGTATTTGCCATTGATCCCTCGTTT
TTTCAGCAAGTGTTGAACAATTTCGGAACAGATACATCTCCACCGGGCAC
AGTACGGGCTCACATATGGAGTCCTCAAGCCTCTGGGATGCATGCACTTG
GAAGCGTCTGCGAATCCGTAGAAGAGGTAAGCACGTCGCGGACACATTTT
AATCTCGGAGTGGGCTGGGAGGTTCCTCATATGCTCTCCCCCTTTGACCC
GCACACAGCCAACGCATCCTCTTCCTGCTTCCACTGCGTCGCCACCCTCC
TCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGAAGCCTTTGTCCTC
CCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATGGTACACCTTTC
CCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTTTTGCTTCATCAGC
TTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTACTGGGAATGTA
GGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGATCACTCAAAGCTA
CATTGAACAAGTGCGCGACGGTAGGTTTAAACCCTCGATTTAATTTGATG
CACTGGGACAATCTCCCTCGAGATTCCCGTAAGCTTTTCGACATCTTTCT
TGAAAATCCACGCTGCCTTGTACCTTTTGTTCCCCTGGGCGGCTGGCAGC
GATCCCAGTGAAGACGATTCGCGGCGTTTGGCGCATCCGCGAGTACCGGG
ACAGGGACCAGCCCCTTTGCAAAGGCAGGATCAAGATGCGAGGTCAGATC
GGAGGGAGGGGGAGGAGATGTGGAGAATTGGAAGGGCAGGAGAGGAGAGG
AGGGGTGCGCGGCATGGGTAGGAGGTGCGATGTGAAATTGAGCACTGAGA
AGGCCCTGCGTCCCCTCGTCGCGCAGGCTTCGTGGAGGAGCCCAACAAAG
GCACCTTGGAGTACACGGGCTGCAACGACGGGAAGGGGAAAGGTGCGTGG
GTGGGCTCTCCAGGGGGGAGGGAGGGCAAGCGTGGGTGGTTGACGGGGAA
GACGGAGCCATGGGCCAGCTGGGGGAGGAAGGGGGAGGGAGTGGTTCGAG
GAAAGAGGGAGGGAGACCTCGACCTGCCTGGAGGAAGACAAGAGGGGAAG
AAGGAGCAAAGAAAGGGGAAGCGTCCGTGTGGAGGAACAGAAGAGTAGAT
CTTGCCTCAAAGCTGTCGGGGTCCCGTTTGGGTCCAAGGAGGAGGCTGTG
ACTTAGAACGCCGACGGGTGACGCCCGCGCCATCGGTTGGCCTTCCCTCT
CCTCACCTCCTCCCCTCTTGGTCTCCCTTCAGGTAACTGGCTGCTCAAGC
CTGCCCGCATTGCCAACGGGCAAATTCGCTTCTCGGCCCGGTGAGTTCCC
CGATCCGATCCTCTGCCCATGCCGCCGCCTCCCTCCTTCTCTCTTGTCCT
CCGTCCCTTCCTCCCCGTTGCCATCCCAAAACTCGATTTCCCTCGACAAG
GATACAGCTTTCTCTCCTCTTCCCCCCTGTCCTTCTCACGTCTTTCTCCC
TTTCTCTTTCCCTCTTTTCCTCTTCAATTCTTTTTCACGCTATTAAGAAT
AACCCGCCCCCCTCACATTCTCTATCGCACTCTCATCTTCTTCCTTCCCG
CCCGTCGTCTGTACCTCGCCTCTCTCTCCTCGCTCCCGGACCTTAGATGG
AAAGTCCGCTTCTCCGACGGCGAGTCGCTCATCTACCGGGGAGACGTCTT
GGCTGGCGGGAACTACGCCAAGGCCTCTGCCTCCATCACGGACGGCGAGA
TCCTCAAGCCCTTCACTGGGATCACTGGTGAGAGGGTGGAGAGCGGTGGG
GGGGAGAGGCGGGAGTCCCCACGGTTTCCGTATGGGAGGGCGTGAGGTCG
CAACTCCCCCCCCCCAAACCTTCGCGCTGCGCGCTTCTGTCCTTATTCCT
CACCCCCACCCTTTCCATATCTCCCTATTGCTTGGCAGGGAATTTGTCGG
AAAAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGTCAGTGATGAC
GAGGAAAAGCTGTAATGCAGGGCCTTAAAGAACAAATAACAACTTTTCAA
ATTG back to topCoding sequence (CDS) from alignment at CM002463.1:66258..68361- >rna4246 ID=rna4246|Name=rna4246|organism=Nannochloropsis gaditana|type=CDS|length=5586bp|location=Sequence derived from alignment at CM002463.1:66258..68361- (Nannochloropsis gaditana)
GGAATTTGTCGGAAAAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAA
GTCAGTGATGACGAGGAAAAGCTGTAAATGGAAAGTCCGCTTCTCCGACG
GCGAGTCGCTCATCTACCGGGGAGACGTCTTGGCTGGCGGGAACTACGCC
AAGGCCTCTGCCTCCATCACGGACGGCGAGATCCTCAAGCCCTTCACTGG
GATCACTGGTAACTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAA
TTCGCTTCTCGGCCCGGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGA
GTACACGGGCTGCAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGA
TTCGCGGCGTTTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTT
TGCAAAGGCAGGATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCA
CTGCGTCGCCACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAA
TAGAAGCCTTTGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGA
GCAATGGTACACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCG
ATTTTTGCTTCATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGG
GTGTTACTGGGAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAG
GTGATCACTCAAAGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAA
GCCTCTGGGATGCATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGG
AATTTGTCGGAAAAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGT
CAGTGATGACGAGGAAAAGCTGTAAATGGAAAGTCCGCTTCTCCGACGGC
GAGTCGCTCATCTACCGGGGAGACGTCTTGGCTGGCGGGAACTACGCCAA
GGCCTCTGCCTCCATCACGGACGGCGAGATCCTCAAGCCCTTCACTGGGA
TCACTGGTAACTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATT
CGCTTCTCGGCCCGGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGT
ACACGGGCTGCAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATT
CGCGGCGTTTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTG
CAAAGGCAGGATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACT
GCGTCGCCACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATA
GAAGCCTTTGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGC
AATGGTACACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGAT
TTTTGCTTCATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGT
GTTACTGGGAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGT
GATCACTCAAAGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGC
CTCTGGGATGCATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGGAA
TTTGTCGGAAAAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGTCA
GTGATGACGAGGAAAAGCTGTAAATGGAAAGTCCGCTTCTCCGACGGCGA
GTCGCTCATCTACCGGGGAGACGTCTTGGCTGGCGGGAACTACGCCAAGG
CCTCTGCCTCCATCACGGACGGCGAGATCCTCAAGCCCTTCACTGGGATC
ACTGGTAACTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCG
CTTCTCGGCCCGGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGTAC
ACGGGCTGCAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATTCG
CGGCGTTTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTGCA
AAGGCAGGATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACTGC
GTCGCCACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGA
AGCCTTTGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAA
TGGTACACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTT
TTGCTTCATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGT
TACTGGGAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGA
TCACTCAAAGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGCCT
CTGGGATGCATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGGAATT
TGTCGGAAAAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGTCAGT
GATGACGAGGAAAAGCTGTAAATGGAAAGTCCGCTTCTCCGACGGCGAGT
CGCTCATCTACCGGGGAGACGTCTTGGCTGGCGGGAACTACGCCAAGGCC
TCTGCCTCCATCACGGACGGCGAGATCCTCAAGCCCTTCACTGGGATCAC
TGGTAACTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCT
TCTCGGCCCGGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGTACAC
GGGCTGCAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATTCGCG
GCGTTTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTGCAAA
GGCAGGATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACTGCGT
CGCCACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGAAG
CCTTTGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATG
GTACACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTTTT
GCTTCATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTA
CTGGGAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGATC
ACTCAAAGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGCCTCT
GGGATGCATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGGAATTTG
TCGGAAAAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGTCAGTGA
TGACGAGGAAAAGCTGTAAATGGAAAGTCCGCTTCTCCGACGGCGAGTCG
CTCATCTACCGGGGAGACGTCTTGGCTGGCGGGAACTACGCCAAGGCCTC
TGCCTCCATCACGGACGGCGAGATCCTCAAGCCCTTCACTGGGATCACTG
GTAACTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCTTC
TCGGCCCGGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGTACACGG
GCTGCAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATTCGCGGC
GTTTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTGCAAAGG
CAGGATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACTGCGTCG
CCACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGAAGCC
TTTGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATGGT
ACACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTTTTGC
TTCATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTACT
GGGAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGATCAC
TCAAAGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGCCTCTGG
GATGCATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGGAATTTGTC
GGAAAAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGTCAGTGATG
ACGAGGAAAAGCTGTAAATGGAAAGTCCGCTTCTCCGACGGCGAGTCGCT
CATCTACCGGGGAGACGTCTTGGCTGGCGGGAACTACGCCAAGGCCTCTG
CCTCCATCACGGACGGCGAGATCCTCAAGCCCTTCACTGGGATCACTGGT
AACTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCTTCTC
GGCCCGGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGTACACGGGC
TGCAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATTCGCGGCGT
TTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTGCAAAGGCA
GGATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACTGCGTCGCC
ACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGAAGCCTT
TGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATGGTAC
ACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTTTTGCTT
CATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTACTGG
GAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGATCACTC
AAAGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGCCTCTGGGA
TGCATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGGAATTTGTCGG
AAAAGAAAGTGGGCACGTTTGAAGCAGATTTGATTCAAGTCAGTGATGAC
GAGGAAAAGCTGTAAATGGAAAGTCCGCTTCTCCGACGGCGAGTCGCTCA
TCTACCGGGGAGACGTCTTGGCTGGCGGGAACTACGCCAAGGCCTCTGCC
TCCATCACGGACGGCGAGATCCTCAAGCCCTTCACTGGGATCACTGGTAA
CTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCTTCTCGG
CCCGGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGTACACGGGCTG
CAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATTCGCGGCGTTT
GGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTGCAAAGGCAGG
ATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACTGCGTCGCCAC
CCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGAAGCCTTTG
TCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATGGTACAC
CTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTTTTGCTTCA
TCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTACTGGGA
ATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGATCACTCAA
AGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGCCTCTGGGATG
CATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAG back to top
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