EWM26437.1, cds4236 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM26437.1 vs. NCBI_GenBank
Match: gi|553183674|ref|XP_005853940.1| (hypothetical protein NGA_0427600 [Nannochloropsis gaditana CCMP526] >gi|422295118|gb|EKU22417.1| hypothetical protein NGA_0427600 [Nannochloropsis gaditana CCMP526] >gi|585108481|gb|EWM26437.1| hypothetical protein Naga_100344g5 [Nannochloropsis gaditana]) HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query: 1 MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSARWKVRFSDGESLIYRGDVLAGGNYAKASASITDGEILKPFTGITGNLSEKKVGTFEADLIQVSDDEEKL 265
MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSARWKVRFSDGESLIYRGDVLAGGNYAKASASITDGEILKPFTGITGNLSEKKVGTFEADLIQVSDDEEKL
Sbjct: 1 MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSARWKVRFSDGESLIYRGDVLAGGNYAKASASITDGEILKPFTGITGNLSEKKVGTFEADLIQVSDDEEKL 265
BLAST of EWM26437.1 vs. NCBI_GenBank
Match: gi|585108482|gb|EWM26438.1| (hypothetical protein Naga_100344g5 [Nannochloropsis gaditana]) HSP 1 Score: 409.453 bits (1051), Expect = 1.298e-143 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR 197
MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR
Sbjct: 1 MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR 197
BLAST of EWM26437.1 vs. NCBI_GenBank
Match: gi|299115189|emb|CBN74020.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 139.813 bits (351), Expect = 1.083e-35 Identity = 85/216 (39.35%), Postives = 115/216 (53.24%), Query Frame = 0
Query: 92 IFLGGVT--------GNVGGHTEAQAS-DQVITQSYIEQVRDAI-PVKTIRGVWRIREYRDRDQPL------------CKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSARWKVRFSDGESLIYRGDV--------------------LAGGNYAKASASITDGEILKPFTGITGNLSEKKVGTFEADLIQVSDDEEKL 265
+F+G VT G V T A A + + +SY E+ + PV T+RG+WR RE R+ L C GR+ +GFV KGT+EY GC D +GKG WL KP I NG+I SARW V F+DG +L+YRGDV + G + + A I GE+L+P I G+L+EKK+G FEADLI++ D++KL
Sbjct: 137 VFIGEVTVSPLLAGKGGVAPPTAAFAELEPLPLKSYSEEFSSGLAPVNTVRGLWRTRETRNDGSALPQEAGRLGRKGICGGRLSFKGFVGA-GKGTVEYKGCGDREGKGRWLTKPKNIVNGRITLSARWSVNFTDGTTLLYRGDVVQDAEAQGTALTVDTSGAAAMGGPAFERPDAHIR-GEVLRPVKNIQGSLTEKKIGEFEADLIELPSDDDKL 350 The following BLAST results are available for this feature:
BLAST of EWM26437.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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