rna4245, rna4245 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4245
Unique Name	rna4245
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1071
Alignment location	CM002463.1:66258..68403 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100344g5.10758.mrna
Orig protein id	gnl\|cribi\|Naga_100344g5.10758
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:66258..68403 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100344g5	gene4088	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4245	rna4245-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26438.1	cds4235	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:66258..68403-
coding sequence from alignment at CM002463.1:66258..68403-

mRNA sequence

>rna4245 ID=rna4245|Name=rna4245|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp
ATGTCACATCTGCCAGAGGTCCCTTCAGGGCCCTCAAATCCTTCACATGG
CAACGACAGGCAGAACCAAATTACGGGGCAGAAGTCGTCCTCTGAGGAAC
AAGAGTCGCGATGCCCTATCTCCTCTCTTCTCGGCAATTTTTTCTACACT
TCGACCTCCACACTATCACATTTACCCACGAGTAATCCCGTGGGAACGTT
GTCCAGTTTCCTTGGGATTGATTGTCCGTTACGGTTCGGGCGCCATGCAT
CCGCGGAGCAGGCAGCGAGGAAGATGGCGGGAGGGGGCGTATGCCCTCTC
GGATTTGGGAAGCGTCAGACCATTGCGGATAGTCAAAGCAGTAATGGGAC
CGAGGAGAGTGCGAACTCACCATCAATTCCTCTCCCTGAGATGACCCTGG
CGAGGCTTCGGGACCACGCACACCTTCATCTCCTCTCCGTCAAAGGCACG
ATATATGATGTCTCGCCTCAGGCAGAAAGATGGGCGCCTCTGTGTGGTCA
TGACGTAAGTCGAGTCCTAGCCAAGGCTGTGGGCGGCAGTGATCTCAATC
TCTCCCATGTCAACCAGGGCTTGGCAGGGCTCTCGTACGAGGAAGCAGTG
CATTTGGAGAAAGTGGTGGCAGCGATGGAGCAGAGTTTCCGAGCCGTTGC
TCTCCTTCCCCCCCAGGAACAGCACTTGCTCTTCGCCTCGACTGTGGGAG
AGGGCGCGACGGAGGTCGTGAGGGAGGGAAAGGAGGACGACGCCTTGAAA
TTGCATGCGCTGATTGAGGAAGGAGGCTCTTTAGAAAGTATCAGTCCCTC
CACCGTCAACCTACCTTGTCCCCGCACGGGCCTTCCTCCTCTGCACAAGG
CGATCGAGGTAGGGAGGGAGGTGGAGGTGCTCCGCCTTCTCCTCCAGCAG
GGCGGGGACCCTCATCGGCGCGTTGCCCTTTACGATGGGGAGGATGCGTG
GGGTGCGACTTTTGACGGTCATGCAGGCACTGGGGCTCTAGAACATAAGT
TTGTGAGGACTGGAAAGCAAAGAACGATGCTGAAAGTCAGGCAATTTGAA
AAGTTGTTATTTGTTCTTTAA

protein sequence of rna4245

>rna4245-protein ID=rna4245-protein|Name=rna4245|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFV
LPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGN
VGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKG
RIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR

mRNA from alignment at CM002463.1:66258..68403-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4245 ID=rna4245|Name=rna4245|organism=Nannochloropsis gaditana|type=mRNA|length=2146bp|location=Sequence derived from alignment at CM002463.1:66258..68403- (Nannochloropsis gaditana)
CTGCCAGGGGATTTTGTGGCAGGTGTGAGGCCTTGCACCTTCCCCGCTTG
TCTTCCATTGAAGCGGAAGTATTTGCCATTGATCCCTCGTTTTTTCAGCA
AGTGTTGAACAATTTCGGAACAGATACATCTCCACCGGGCACAGTACGGG
CTCACATATGGAGTCCTCAAGCCTCTGGGATGCATGCACTTGGAAGCGTC
TGCGAATCCGTAGAAGAGGTAAGCACGTCGCGGACACATTTTAATCTCGG
AGTGGGCTGGGAGGTTCCTCATATGCTCTCCCCCTTTGACCCGCACACAG
CCAACGCATCCTCTTCCTGCTTCCACTGCGTCGCCACCCTCCTCCTTCTC
CTGCTTTTGCTTATTTCGGATGGAATAGAAGCCTTTGTCCTCCCCGTCTC
CGCGCTGAAAAGACCGTCTAGTCGAGCAATGGTACACCTTTCCCCTACGG
ACGCCGACACGGCTCCTCGCTGTCGATTTTTGCTTCATCAGCTTGCCACC
GTAGCAGGCGGCATATTTCTCGGGGGTGTTACTGGGAATGTAGGCGGGCA
TACAGAGGCACAAGCCTCGGATCAGGTGATCACTCAAAGCTACATTGAAC
AAGTGCGCGACGGTAGGTTTAAACCCTCGATTTAATTTGATGCACTGGGA
CAATCTCCCTCGAGATTCCCGTAAGCTTTTCGACATCTTTCTTGAAAATC
CACGCTGCCTTGTACCTTTTGTTCCCCTGGGCGGCTGGCAGCGATCCCAG
TGAAGACGATTCGCGGCGTTTGGCGCATCCGCGAGTACCGGGACAGGGAC
CAGCCCCTTTGCAAAGGCAGGATCAAGATGCGAGGTCAGATCGGAGGGAG
GGGGAGGAGATGTGGAGAATTGGAAGGGCAGGAGAGGAGAGGAGGGGTGC
GCGGCATGGGTAGGAGGTGCGATGTGAAATTGAGCACTGAGAAGGCCCTG
CGTCCCCTCGTCGCGCAGGCTTCGTGGAGGAGCCCAACAAAGGCACCTTG
GAGTACACGGGCTGCAACGACGGGAAGGGGAAAGGTGCGTGGGTGGGCTC
TCCAGGGGGGAGGGAGGGCAAGCGTGGGTGGTTGACGGGGAAGACGGAGC
CATGGGCCAGCTGGGGGAGGAAGGGGGAGGGAGTGGTTCGAGGAAAGAGG
GAGGGAGACCTCGACCTGCCTGGAGGAAGACAAGAGGGGAAGAAGGAGCA
AAGAAAGGGGAAGCGTCCGTGTGGAGGAACAGAAGAGTAGATCTTGCCTC
AAAGCTGTCGGGGTCCCGTTTGGGTCCAAGGAGGAGGCTGTGACTTAGAA
CGCCGACGGGTGACGCCCGCGCCATCGGTTGGCCTTCCCTCTCCTCACCT
CCTCCCCTCTTGGTCTCCCTTCAGGTAACTGGCTGCTCAAGCCTGCCCGC
ATTGCCAACGGGCAAATTCGCTTCTCGGCCCGGTGAGTTCCCCGATCCGA
TCCTCTGCCCATGCCGCCGCCTCCCTCCTTCTCTCTTGTCCTCCGTCCCT
TCCTCCCCGTTGCCATCCCAAAACTCGATTTCCCTCGACAAGGATACAGC
TTTCTCTCCTCTTCCCCCCTGTCCTTCTCACGTCTTTCTCCCTTTCTCTT
TCCCTCTTTTCCTCTTCAATTCTTTTTCACGCTATTAAGAATAACCCGCC
CCCCTCACATTCTCTATCGCACTCTCATCTTCTTCCTTCCCGCCCGTCGT
CTGTACCTCGCCTCTCTCTCCTCGCTCCCGGACCTTAGATGGAAAGTCCG
CTTCTCCGACGGCGAGTCGCTCATCTACCGGGGAGACGTCTTGGCTGGCG
GGAACTACGCCAAGGCCTCTGCCTCCATCACGGACGGCGAGATCCTCAAG
CCCTTCACTGGGATCACTGGTGAGAGGGTGGAGAGCGGTGGGGGGGAGAG
GCGGGAGTCCCCACGGTTTCCGTATGGGAGGGCGTGAGGTCGCAACTCCC
CCCCCCCAAACCTTCGCGCTGCGCGCTTCTGTCCTTATTCCTCACCCCCA
CCCTTTCCATATCTCCCTATTGCTTGGCAGGGAATTTGTCGGAAAAGAAA
GTGGGCACGTTTGAAGCAGATTTGATTCAAGTCAGTGATGACGAGGAAAA
GCTGTAATGCAGGGCCTTAAAGAACAAATAACAACTTTTCAAATTG

Coding sequence (CDS) from alignment at CM002463.1:66258..68403-

>rna4245 ID=rna4245|Name=rna4245|organism=Nannochloropsis gaditana|type=CDS|length=2970bp|location=Sequence derived from alignment at CM002463.1:66258..68403- (Nannochloropsis gaditana)
GTAACTGGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCTTC
TCGGCCCGGTGAGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGTAC
ACGGGCTGCAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATTCG
CGGCGTTTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTGCA
AAGGCAGGATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACTGC
GTCGCCACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGA
AGCCTTTGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAA
TGGTACACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTT
TTGCTTCATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGT
TACTGGGAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGA
TCACTCAAAGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGCCT
CTGGGATGCATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGTAACT
GGCTGCTCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCTTCTCGGCC
CGGTGAGCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGTACACGGGC
TGCAACGACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATTCGCGGCGT
TTGGCGCATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTGCAAAGGCA
GGATCAAGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACTGCGTCGCC
ACCCTCCTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGAAGCCTT
TGTCCTCCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATGGTAC
ACCTTTCCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTTTTGCTT
CATCAGCTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTACTGG
GAATGTAGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGATCACTC
AAAGCTACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGCCTCTGGGA
TGCATGCACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGTAACTGGCTGC
TCAAGCCTGCCCGCATTGCCAACGGGCAAATTCGCTTCTCGGCCCGGTGA
GCTTCGTGGAGGAGCCCAACAAAGGCACCTTGGAGTACACGGGCTGCAAC
GACGGGAAGGGGAAAGCGATCCCAGTGAAGACGATTCGCGGCGTTTGGCG
CATCCGCGAGTACCGGGACAGGGACCAGCCCCTTTGCAAAGGCAGGATCA
AGATGCGAGCCAACGCATCCTCTTCCTGCTTCCACTGCGTCGCCACCCTC
CTCCTTCTCCTGCTTTTGCTTATTTCGGATGGAATAGAAGCCTTTGTCCT
CCCCGTCTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATGGTACACCTTT
CCCCTACGGACGCCGACACGGCTCCTCGCTGTCGATTTTTGCTTCATCAG
CTTGCCACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTACTGGGAATGT
AGGCGGGCATACAGAGGCACAAGCCTCGGATCAGGTGATCACTCAAAGCT
ACATTGAACAAGTGCGCGACGATGGAGTCCTCAAGCCTCTGGGATGCATG
CACTTGGAAGCGTCTGCGAATCCGTAGAAGAGGTAACTGGCTGCTCAAGC
CTGCCCGCATTGCCAACGGGCAAATTCGCTTCTCGGCCCGGTGAGCTTCG
TGGAGGAGCCCAACAAAGGCACCTTGGAGTACACGGGCTGCAACGACGGG
AAGGGGAAAGCGATCCCAGTGAAGACGATTCGCGGCGTTTGGCGCATCCG
CGAGTACCGGGACAGGGACCAGCCCCTTTGCAAAGGCAGGATCAAGATGC
GAGCCAACGCATCCTCTTCCTGCTTCCACTGCGTCGCCACCCTCCTCCTT
CTCCTGCTTTTGCTTATTTCGGATGGAATAGAAGCCTTTGTCCTCCCCGT
CTCCGCGCTGAAAAGACCGTCTAGTCGAGCAATGGTACACCTTTCCCCTA
CGGACGCCGACACGGCTCCTCGCTGTCGATTTTTGCTTCATCAGCTTGCC
ACCGTAGCAGGCGGCATATTTCTCGGGGGTGTTACTGGGAATGTAGGCGG
GCATACAGAGGCACAAGCCTCGGATCAGGTGATCACTCAAAGCTACATTG
AACAAGTGCGCGACGATGGAGTCCTCAAGCCTCTGGGATGCATGCACTTG
GAAGCGTCTGCGAATCCGTAGAAGAGGTAACTGGCTGCTCAAGCCTGCCC
GCATTGCCAACGGGCAAATTCGCTTCTCGGCCCGGTGAGCTTCGTGGAGG
AGCCCAACAAAGGCACCTTGGAGTACACGGGCTGCAACGACGGGAAGGGG
AAAGCGATCCCAGTGAAGACGATTCGCGGCGTTTGGCGCATCCGCGAGTA
CCGGGACAGGGACCAGCCCCTTTGCAAAGGCAGGATCAAGATGCGAGCCA
ACGCATCCTCTTCCTGCTTCCACTGCGTCGCCACCCTCCTCCTTCTCCTG
CTTTTGCTTATTTCGGATGGAATAGAAGCCTTTGTCCTCCCCGTCTCCGC
GCTGAAAAGACCGTCTAGTCGAGCAATGGTACACCTTTCCCCTACGGACG
CCGACACGGCTCCTCGCTGTCGATTTTTGCTTCATCAGCTTGCCACCGTA
GCAGGCGGCATATTTCTCGGGGGTGTTACTGGGAATGTAGGCGGGCATAC
AGAGGCACAAGCCTCGGATCAGGTGATCACTCAAAGCTACATTGAACAAG
TGCGCGACGATGGAGTCCTCAAGCCTCTGGGATGCATGCACTTGGAAGCG
TCTGCGAATCCGTAGAAGAG

Synonyms

Publications