EWM26438.1, cds4235 (CDS) Nannochloropsis gaditana

Overview
NameEWM26438.1
Unique Namecds4235
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:68186..68246 -
Alignment locationCM002463.1:67792..68103 -
Alignment locationCM002463.1:67570..67662 -
Alignment locationCM002463.1:67370..67435 -
Alignment locationCM002463.1:66968..67029 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26438.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100344g5.10758.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:68186..68246 -
CM002463.1supercontigCM002463.1:67792..68103 -
CM002463.1supercontigCM002463.1:67570..67662 -
CM002463.1supercontigCM002463.1:67370..67435 -
CM002463.1supercontigCM002463.1:66968..67029 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM26438.1 vs. NCBI_GenBank
Match: gi|585108482|gb|EWM26438.1| (hypothetical protein Naga_100344g5 [Nannochloropsis gaditana])

HSP 1 Score: 407.142 bits (1045), Expect = 8.351e-144
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 
Query:    1 MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR 197
            MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR
Sbjct:    1 MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR 197
[Close]
BLAST of EWM26438.1 vs. NCBI_GenBank
Match: gi|553183674|ref|XP_005853940.1| (hypothetical protein NGA_0427600 [Nannochloropsis gaditana CCMP526] >gi|422295118|gb|EKU22417.1| hypothetical protein NGA_0427600 [Nannochloropsis gaditana CCMP526] >gi|585108481|gb|EWM26437.1| hypothetical protein Naga_100344g5 [Nannochloropsis gaditana])

HSP 1 Score: 409.453 bits (1051), Expect = 9.648e-144
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 
Query:    1 MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR 197
            MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR
Sbjct:    1 MESSSLWDACTWKRLRIRRRANASSSCFHCVATLLLLLLLLISDGIEAFVLPVSALKRPSSRAMVHLSPTDADTAPRCRFLLHQLATVAGGIFLGGVTGNVGGHTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRDRDQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR 197
[Close]
BLAST of EWM26438.1 vs. NCBI_GenBank
Match: gi|299115189|emb|CBN74020.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.7221 bits (195), Expect = 2.809e-14
Identity = 51/128 (39.84%), Postives = 66/128 (51.56%), Query Frame = 0 
Query:   92 IFLGGVT--------GNVGGHTEAQAS-DQVITQSYIEQVRDAI-PVKTIRGVWRIREYRDRDQPL------------CKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSAR 197
            +F+G VT        G V   T A A  + +  +SY E+    + PV T+RG+WR RE R+    L            C GR+  +GFV    KGT+EY GC D +GKG WL KP  I NG+I  SAR
Sbjct:  137 VFIGEVTVSPLLAGKGGVAPPTAAFAELEPLPLKSYSEEFSSGLAPVNTVRGLWRTRETRNDGSALPQEAGRLGRKGICGGRLSFKGFVGA-GKGTVEYKGCGDREGKGRWLTKPKNIVNGRITLSAR 263
The following BLAST results are available for this feature:
BLAST of EWM26438.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108482|gb|EWM26438.1|8.351e-144100.00hypothetical protein Naga_100344g5 [Nannochloropsi... [more]
gi|553183674|ref|XP_005853940.1|9.648e-144100.00hypothetical protein NGA_0427600 [Nannochloropsis ... [more]
gi|299115189|emb|CBN74020.1|2.809e-1439.84expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4245rna4245Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications