rna4243, rna4243 (mRNA) Nannochloropsis gaditana

Overview
Namerna4243
Unique Namerna4243
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1422
Alignment locationCM002463.1:60478..61497 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100344g3.10759.mrna
Orig protein idgnl|cribi|Naga_100344g3.10759
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:60478..61497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100344g3gene4086Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4243rna4243-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26439.1cds4233Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4243 ID=rna4243|Name=rna4243|organism=Nannochloropsis gaditana|type=mRNA|length=1422bp
ATGAAATCAACGTGGAGGAGATATTATTCTCACGAGAATTTCGAAAGTCA
TAAGAGGATGTATGTCAAATTTAGTGATCAGCGCCCCCCATGTCTTCCTA
GTTGGCATACGAAAATAGTAACAGTTGAGTCAAAGTATCCGTCTATTGGG
TGGGGAGGTTCAACTTTAAGCTCTGACCATGCTTTGATGGCAACGGATCT
TGTGTGTGTCGAGATGATAAGAAGGCAATCAAAATACTTCATTAAGACAC
TAATGCAGTCTTTGTGTCTGGTCATATTGGTGTGCATGGCTCCTTATGCA
CGACCGTTTCTGCTTCCTTCTACCTCGTCCTCCTCTCCATCGTCCTTAGT
GGCACCTCTGAAAGGCGCACATCGGGATCTCAACCCACATTCTACAGCGT
CATCATCATCACGTACACCTTCTACCTCTCATGGCTCGAATTTGTCCTCA
TCTTCACCAACCTCGACCTTCGACACGTTCGCGTCTTTCATTACTGCCAT
CCAGCGTGAGATCATCCAGACCATTGAGACAGAGGACGGAACAGATGTCA
AATTTTTATGTGATGAATGGGAGCGGGACGGGGGACGAAGCCATGGGGCT
ACCTGCGTATTGGAAGGGGGAGCATTCATCGAGAAAGGTGCCGTCAGCAT
ATCCATCATTCAGGGAAAGCTTTCCGCGGAGAGGGCTGCTTCGATGAGCG
CCAGGGGCCGGGACCTGGGCGATTGCTCCCAAGGAGATGTGCCCTACGCA
GCTGCCGCCCTCTCCCTCGTCCTCCACTCCGCCAACCCCCACCTCCCCAC
CTTCAGGAGCGACGTCCGCTACTTCGAGTGCCAGGGCAAAGGCTGGTTCG
GGGGAGGGGCTGACCTCACGCCCTATTACCTTCACGACGGGGACATCGTG
GCCTTTCATGCGCTGTACCGCGGCCTCTGCGACGCCTTCGACGAAAAGAA
GGCCCTCTTTCCCAAGTACAAGAAATGGTGCGATTCGTACTTTTTCCTCC
CAGGCCGGCAGGAGCATCGAGGGACGGGCGGCATTTTCTTCGACGACTTG
GAAGCGCTTGAGGGCGGGGGGGAGGAAGCGGGGGAGGAAGCGGGGGAGGA
AGGGGTAGAAAGGGCGCGCATGTTCACCGAGGCGGTCGCCCGGAGCTTCA
TGCCCAGCTACCTGCCACTGGTGCGGAGGCGTCGTGACCAGCTTTTTGAC
GAACGACAGAAGCAGTGGATGCTGTTGAGACGAGGACGATACTTGGAGTT
TAATCTGCTCTACGACAGGGGCGTCAAATTCGGACTGGCAGGGGGGCGCT
TCGAGAGCGTTATGGTCTCAGCCCCACCTATGGCAGCCTGGAAGTACAAC
CACACGCCTGAAGAAGGCAGCGAGGAGGCTCGGCTTCTAGCAATCCTCAA
AACTCCTCGAGATTGGGTTTGA
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protein sequence of rna4243

>rna4243-protein ID=rna4243-protein|Name=rna4243|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MPSQRWVPSIPAEYSIMSKNPPPITIVMDGGGNDVISVKDDCLSFNDRCQ
QQIKEATDILADLLERMHEDKVQHVLLMGPYYLENLNKAVDEGFKLLSNV
CKNATIDCHIADTRDLDPPLGDDGIHPIQEGYELLATRIWEIKLDNDIPI
I
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mRNA from alignment at CM002463.1:60478..61497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4243 ID=rna4243|Name=rna4243|organism=Nannochloropsis gaditana|type=mRNA|length=1020bp|location=Sequence derived from alignment at CM002463.1:60478..61497- (Nannochloropsis gaditana)
ATGCCTTCACAAAGATGGGTGCCCTCAATCCCAGCCGAGTACAGCATCAT
GTCCAAGAACCCCCCGCCCATCACCATCGTCATGGATGGGTAAGTGCCGC
AGATCTCCCCCCTTCTCGTGGCTGCGGATTGGACTCCTTGCCTGGTGGAG
TGGCATCGAGGCGGTACTGAAGGCCACGTTTGGGTGGCCACCTCCAGTAC
TTTGGGTATTGGCGAAGCGAGTAGTCTCGTTTCTCAACCGAGCCTCCTTC
AATGTACACGCACATTCGTCTTTTTTCCTTGCAGGGGAGGCAACGATGTG
ATCAGCGTGAAAGACGACTGCTTGTCTTTCAACGACCGGTGTCAGCAGCA
GATCAAGGAGGCGACAGACATCCTCGCCGACCTCTTGGAGAGGATGCACG
AGGATAAGGTCCAGCATGTCTTGCTCATGGGGTACGTCGTCAGCTGGAAA
AAGGCGTGAGGCGTTTCTAGGCCTAAGACCAAGATGCTACATTCCCAGTT
TTTCGCTTTCTGCCGCCATGCCCCCATTGTCTATCCACAAAAGTTCTCGC
ACTAGCATCCTTCAATGAATGAAAAGTGTGGTATATCCCCGTGCACTGAT
ATCCCTTACCGTCCCTTTTCCTCGGCCGGTCTATTCTTTGTCCATAGTCC
GTACTATCTAGAGAATCTGAACAAGGCCGTCGACGAGGGGTTCAAGCTAC
TCTCCAATGTGTGCAAGAACGCGACCATTGATTGCCACATAGCCGACACC
CGAGATCTTGATCCGCCCTTGGTAAGAAGGATTCGAATGGGAAAGGGAAA
CGATTTGAGGATCGATGGAATGTGGTTGACAACGAGAGCCGGTCGTGTAA
AGGAGACACAAACGTAGGAAATGAAATTATCGAGAGGAAACTTCTTACCT
TCACGCTCGCACGCTATAATCCAGGGGGACGACGGCATTCATCCTATTCA
GGAAGGATATGAGCTCCTGGCTACCCGCATTTGGGAAATCAAACTCGATA
ATGATATTCCTATTATCTAG
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Coding sequence (CDS) from alignment at CM002463.1:60478..61497-

>rna4243 ID=rna4243|Name=rna4243|organism=Nannochloropsis gaditana|type=CDS|length=1824bp|location=Sequence derived from alignment at CM002463.1:60478..61497- (Nannochloropsis gaditana)
GGGGACGACGGCATTCATCCTATTCAGGAAGGATATGAGCTCCTGGCTAC
CCGCATTTGGGAAATCAAACTCGATAATGATATTCCTATTATCTAGTCCG
TACTATCTAGAGAATCTGAACAAGGCCGTCGACGAGGGGTTCAAGCTACT
CTCCAATGTGTGCAAGAACGCGACCATTGATTGCCACATAGCCGACACCC
GAGATCTTGATCCGCCCTTGGGGAGGCAACGATGTGATCAGCGTGAAAGA
CGACTGCTTGTCTTTCAACGACCGGTGTCAGCAGCAGATCAAGGAGGCGA
CAGACATCCTCGCCGACCTCTTGGAGAGGATGCACGAGGATAAGGTCCAG
CATGTCTTGCTCATGGGATGCCTTCACAAAGATGGGTGCCCTCAATCCCA
GCCGAGTACAGCATCATGTCCAAGAACCCCCCGCCCATCACCATCGTCAT
GGATGGGGGGACGACGGCATTCATCCTATTCAGGAAGGATATGAGCTCCT
GGCTACCCGCATTTGGGAAATCAAACTCGATAATGATATTCCTATTATCT
AGTCCGTACTATCTAGAGAATCTGAACAAGGCCGTCGACGAGGGGTTCAA
GCTACTCTCCAATGTGTGCAAGAACGCGACCATTGATTGCCACATAGCCG
ACACCCGAGATCTTGATCCGCCCTTGGGGAGGCAACGATGTGATCAGCGT
GAAAGACGACTGCTTGTCTTTCAACGACCGGTGTCAGCAGCAGATCAAGG
AGGCGACAGACATCCTCGCCGACCTCTTGGAGAGGATGCACGAGGATAAG
GTCCAGCATGTCTTGCTCATGGGATGCCTTCACAAAGATGGGTGCCCTCA
ATCCCAGCCGAGTACAGCATCATGTCCAAGAACCCCCCGCCCATCACCAT
CGTCATGGATGGGGGGACGACGGCATTCATCCTATTCAGGAAGGATATGA
GCTCCTGGCTACCCGCATTTGGGAAATCAAACTCGATAATGATATTCCTA
TTATCTAGTCCGTACTATCTAGAGAATCTGAACAAGGCCGTCGACGAGGG
GTTCAAGCTACTCTCCAATGTGTGCAAGAACGCGACCATTGATTGCCACA
TAGCCGACACCCGAGATCTTGATCCGCCCTTGGGGAGGCAACGATGTGAT
CAGCGTGAAAGACGACTGCTTGTCTTTCAACGACCGGTGTCAGCAGCAGA
TCAAGGAGGCGACAGACATCCTCGCCGACCTCTTGGAGAGGATGCACGAG
GATAAGGTCCAGCATGTCTTGCTCATGGGATGCCTTCACAAAGATGGGTG
CCCTCAATCCCAGCCGAGTACAGCATCATGTCCAAGAACCCCCCGCCCAT
CACCATCGTCATGGATGGGGGGACGACGGCATTCATCCTATTCAGGAAGG
ATATGAGCTCCTGGCTACCCGCATTTGGGAAATCAAACTCGATAATGATA
TTCCTATTATCTAGTCCGTACTATCTAGAGAATCTGAACAAGGCCGTCGA
CGAGGGGTTCAAGCTACTCTCCAATGTGTGCAAGAACGCGACCATTGATT
GCCACATAGCCGACACCCGAGATCTTGATCCGCCCTTGGGGAGGCAACGA
TGTGATCAGCGTGAAAGACGACTGCTTGTCTTTCAACGACCGGTGTCAGC
AGCAGATCAAGGAGGCGACAGACATCCTCGCCGACCTCTTGGAGAGGATG
CACGAGGATAAGGTCCAGCATGTCTTGCTCATGGGATGCCTTCACAAAGA
TGGGTGCCCTCAATCCCAGCCGAGTACAGCATCATGTCCAAGAACCCCCC
GCCCATCACCATCGTCATGGATGG
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Synonyms
Publications