rna4240, rna4240 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4240
Unique Name	rna4240
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	401
Alignment location	CM002463.1:50219..52728 +

Link to JBrowse

Properties


Property Name	Value
Product	Amino acid transporter, transmembrane
Orig transcript id	gnl\|cribi\|Naga_100580g3.4593.mrna
Orig protein id	gnl\|cribi\|Naga_100580g3.4593
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:50219..52728 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100580g3	gene4083	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4240	rna4240-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26445.1	cds4230	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:50219..52728+
coding sequence from alignment at CM002463.1:50219..52728+

mRNA sequence

>rna4240 ID=rna4240|Name=rna4240|organism=Nannochloropsis gaditana|type=mRNA|length=401bp
ACAGGCAAAAATACAGCAGCAGGGAAAAATACCGCTCGATTTGTAGGCTC
ACTACTCACTTGCGGCTCTTCTTCTCGCTTTGATTCGAGCTTGTTTTCAT
ATTCGTGCCGTCCAAAACACGGGGGGCAGCAATGGAGACTTCGAGACACG
AAGAAGAACAATTGAAGAATGGAGACACCGATAGTCCGAGTGAGCGGTCT
TTTCTTTTGCCAACTGCATTGGTGGTGCGTTCACTCTCGTCTGAAAGTCA
GTATGCGAGCCTAGGAGGCCCCGCCACGCCCTCTTGCTCTCCAGCGGCGG
CTGACAAGGAGTCAACGAGACTGCGGAAGCGACCGAGGAAATTGCAAGGG
TATGTGGGGCTCAGTGCTGAGAGGCGCCCCGGGAACGTCGTGGCGGTCTA
G

protein sequence of rna4240

>rna4240-protein ID=rna4240-protein|Name=rna4240|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MLLQLFPAWSERGILLALLPPFVLLSWVRGFRRLSFLNVLGNASLVLGII
AIFLDGFSRLVAPSSSTFPPVSSSLSSAPKPPTPTALSPAPSSPSFSLST
RGIHLVRPQTLLLFFGPTAFLFVVHYCALPIESEAKRPEDFKRALGLSMS
LTAALDVAIGAAGYIFYGGLSPLVRDQAGQVVPGCERPVCDNVLKNISPG
PLKTIIFAAFSINLTLTYVIMLAPPREYVEEAMVRGDSIISSKWQRNIWR
SVLVIFTFMVASSVHQFGLITAFVGAITDTLQGFVLPPLIYAATFAVWMP
KAEKALMITMSTLGIVLMLTATYQNMRELENLVLR

mRNA from alignment at CM002463.1:50219..52728+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4240 ID=rna4240|Name=rna4240|organism=Nannochloropsis gaditana|type=mRNA|length=2510bp|location=Sequence derived from alignment at CM002463.1:50219..52728+ (Nannochloropsis gaditana)
cctcctcgtcaagaCGGCCACCTGTGTTTCTTGTCTGGGCGCCTGTGCCG
CCTACATCACTTTCGTTGCCGGGATGCTGCTTCAGCTCTTTCCGGCATGG
AGCGAGGTGGGTTCTGGACGGGTGGGACGAtgggaggtagggggaaaaga
cggacagagggaggaaaggaagcaagaagggcaaggctttggctgctgcc
gccgtgGACAGATGGGGGGTAtggaagggacgagggacgagggggaggct
gccTTGGAGACGCGTATATGCAGCTATGTCATGTTGAGTCTAGAATAGTA
GATGGTCTTATGGCAAAATGATGCTTCGTgtcgtgggagggcgggcgacg
tGAGAGCAACGGGCATCTATGCAGAAGAATCTGGAGGACACggcagaagg
gaggtcgAAAAATTTCCCAGCATCCTCGCCTTGGCTTTGCTTGACCTCTG
GCctgctctctctcccctatTCAGAGGGGAATCCTCTTGGCCCTTCTGCc
gcccttcgtcctcctctcctgggTCCGCGGCTTCCGGCGCCTCTCCTTTT
TGAATGTGCTGGGAAATGCCTCGCTCGTTCTGGGTAAGCCGAGAGGGGCG
GACAAGAGGACGCTCGCTGAGCCTGGGGAGCACGGGACTGTGGTTCGGGA
GcagtgggggaaggagagagctaCAAAAGTGTCGGATAGAGGCCGATCAG
GAGCAGGATGTTTTGATGGgatgcagggaggagggcaggtggTGGGGATG
TGAAAAAGTGCCgtgtctctctcttcccttcccgtcgccCCTGACCAAGC
CCCGTCCCCCATACCAGGCATTATTGCCATCTTCCTCGACGGTTTTTCTC
GCCTCGtagctccctcctcctccacttttccccccgtctcgtcctccttg
tcctccgctcCTAAGCCTCCCACCCCTACGGCCCtgtctcccgctccctc
ctcgccctcgttttccctctccacccgcgGTATCCACCTTGTACGACccc
aaaccctcctcctcttttttgggcccaccgcctttcttttcgttGTCCAC
TACTGTAAGTATGCAGGGTATAGCAAACACGAACGAAAGGacatggcagg
gagggcctgACGTAGGATGGGACTCAGGCCAACGGCCAAGATGCTGGAGT
CTAATTCAAGGGTGGGAGAGCGCCGCGACCAAGGGAGTTCGAGCACGCAC
ACGACCTCATGGCTGTGTTCGTCGacttgctccctctccccgaaACCCAA
actcttccatccctccccttcctcccttccgcgctTTCAGGCGCTCTACC
AATCGAATCCGAGGCGAAACGTCCCGAAGACTTCAAGCGAGCCCTAGGAC
TCTCCATGAGCCTCACAGCTGCCCTGGACGTGGCTATCGGGTAAGGGAGT
TAAGGTTTAAAGGCGTTTATCATCATGGGAGGGGTagtgagaggaaggag
gggaagcctcCTGCATCtgtttcccttttctcaaCTCTGCTCGCATCCAA
GGTAGCCGTTGAGACGCTCAACGCTATTCCTTTTCATATCCAATGATTTG
AACAtcctcgtccttttcctcagAGCGGCTGGCTACATCTTCTATGGGGG
ACTGTCCCCCTTGGTGAGGGACCAGGCAGGGCAAGTGGTACCCGGATGTG
AGCGACCCGTGTGCGATAACGGTGCGTATTGGAGTGGCCATGGTGCTGAA
TCTTTCAGGAGAAAGGATGAAGGACAGACACGTCCATGTGTGTTTCTAAG
AAGAGCGGGCAACTGGACGCAAGAAGGACATCGAAGCCCAAGCGATGCGA
GACGTTGGCATGGCTTCTCTGCCAGTTCGAGAAGGGAGTCGAGACCTTTT
TGTTGACGTCTCCCTTgaattttcttccccctttaaGTCCTCAAAAACAT
CAGCCCCGGACCCCTCAAAACTATCATCTTCGCCGCGTTTTCTATCAATC
TGACGTTGACCTACGTCATCATGCTGGCCCCGCCTCGGGAGTACGTGGAA
GAGGCGATGGTCCGAGGCGACAGGTACGCACGTTGACAGGAAGTGGAGAG
TCGGGTCGTCTCTGGAGGGTGGCATCATTCTGCAGACGTTTGTATTGTGA
ACAGAAGCACCCCTTTAAAAGACCCACAACGCGTGGCTATCTGAACAGTA
TAATTTCAAGCAAATGGCAGCGAAATATATGGCGTTCagtcctcgtcatc
ttcacCTTCATGGTCGCTTCCTCTGTCCATCAGTTTGGCCTTATCACTGC
CTTTGTAGGGGCAATCACGGACACTCTGCAAGGCTTTGTGCTCCCACCCT
TGATTTATGCTGCCACCTTTGCCGTTTGGATGCcaaaggcagagaaggcg
cTAATGATTACCATGAGTACGCTTGGTATCGTGTTGATGCTGACCGCCAC
GTATCAGAATATGAGGGAGTTGGAGAACTTGGTCCTCAGGTAGTCGATTG
ATAACAAAGTGAATCTGTGCATATTCAAAGTAAATCAAGAAATTCAGGAA
TGTTCTTTTC

Coding sequence (CDS) from alignment at CM002463.1:50219..52728+

>rna4240 ID=rna4240|Name=rna4240|organism=Nannochloropsis gaditana|type=CDS|length=7056bp|location=Sequence derived from alignment at CM002463.1:50219..52728+ (Nannochloropsis gaditana)
ATGCTGCTTCAGCTCTTTCCGGCATGGAGCGAGAGGGGAATCCTCTTGGC
CCTTCTGCcgcccttcgtcctcctctcctgggTCCGCGGCTTCCGGCGCC
TCTCCTTTTTGAATGTGCTGGGAAATGCCTCGCTCGTTCTGGGCATTATT
GCCATCTTCCTCGACGGTTTTTCTCGCCTCGtagctccctcctcctccac
ttttccccccgtctcgtcctccttgtcctccgctcCTAAGCCTCCCACCC
CTACGGCCCtgtctcccgctccctcctcgccctcgttttccctctccacc
cgcgGTATCCACCTTGTACGACcccaaaccctcctcctcttttttgggcc
caccgcctttcttttcgttGTCCACTACTGCGCTCTACCAATCGAATCCG
AGGCGAAACGTCCCGAAGACTTCAAGCGAGCCCTAGGACTCTCCATGAGC
CTCACAGCTGCCCTGGACGTGGCTATCGGAGCGGCTGGCTACATCTTCTA
TGGGGGACTGTCCCCCTTGGTGAGGGACCAGGCAGGGCAAGTGGTACCCG
GATGTGAGCGACCCGTGTGCGATAACGTCCTCAAAAACATCAGCCCCGGA
CCCCTCAAAACTATCATCTTCGCCGCGTTTTCTATCAATCTGACGTTGAC
CTACGTCATCATGCTGGCCCCGCCTCGGGAGTACGTGGAAGAGGCGATGG
TCCGAGGCGACAGTATAATTTCAAGCAAATGGCAGCGAAATATATGGCGT
TCagtcctcgtcatcttcacCTTCATGGTCGCTTCCTCTGTCCATCAGTT
TGGCCTTATCACTGCCTTTGTAGGGGCAATCACGGACACTCTGCAAGGCT
TTGTGCTCCCACCCTTGATTTATGCTGCCACCTTTGCCGTTTGGATGCca
aaggcagagaaggcgcTAATGATTACCATGAGTACGCTTGGTATCGTGTT
GATGCTGACCGCCACGTATCAGAATATGAGGGAGTTGGAGAACTTGGTCC
TCAGGTAGATGCTGCTTCAGCTCTTTCCGGCATGGAGCGAGAGGGGAATC
CTCTTGGCCCTTCTGCcgcccttcgtcctcctctcctgggTCCGCGGCTT
CCGGCGCCTCTCCTTTTTGAATGTGCTGGGAAATGCCTCGCTCGTTCTGG
GCATTATTGCCATCTTCCTCGACGGTTTTTCTCGCCTCGtagctccctcc
tcctccacttttccccccgtctcgtcctccttgtcctccgctcCTAAGCC
TCCCACCCCTACGGCCCtgtctcccgctccctcctcgccctcgttttccc
tctccacccgcgGTATCCACCTTGTACGACcccaaaccctcctcctcttt
tttgggcccaccgcctttcttttcgttGTCCACTACTGCGCTCTACCAAT
CGAATCCGAGGCGAAACGTCCCGAAGACTTCAAGCGAGCCCTAGGACTCT
CCATGAGCCTCACAGCTGCCCTGGACGTGGCTATCGGAGCGGCTGGCTAC
ATCTTCTATGGGGGACTGTCCCCCTTGGTGAGGGACCAGGCAGGGCAAGT
GGTACCCGGATGTGAGCGACCCGTGTGCGATAACGTCCTCAAAAACATCA
GCCCCGGACCCCTCAAAACTATCATCTTCGCCGCGTTTTCTATCAATCTG
ACGTTGACCTACGTCATCATGCTGGCCCCGCCTCGGGAGTACGTGGAAGA
GGCGATGGTCCGAGGCGACAGTATAATTTCAAGCAAATGGCAGCGAAATA
TATGGCGTTCagtcctcgtcatcttcacCTTCATGGTCGCTTCCTCTGTC
CATCAGTTTGGCCTTATCACTGCCTTTGTAGGGGCAATCACGGACACTCT
GCAAGGCTTTGTGCTCCCACCCTTGATTTATGCTGCCACCTTTGCCGTTT
GGATGCcaaaggcagagaaggcgcTAATGATTACCATGAGTACGCTTGGT
ATCGTGTTGATGCTGACCGCCACGTATCAGAATATGAGGGAGTTGGAGAA
CTTGGTCCTCAGGTAGATGCTGCTTCAGCTCTTTCCGGCATGGAGCGAGA
GGGGAATCCTCTTGGCCCTTCTGCcgcccttcgtcctcctctcctgggTC
CGCGGCTTCCGGCGCCTCTCCTTTTTGAATGTGCTGGGAAATGCCTCGCT
CGTTCTGGGCATTATTGCCATCTTCCTCGACGGTTTTTCTCGCCTCGtag
ctccctcctcctccacttttccccccgtctcgtcctccttgtcctccgct
cCTAAGCCTCCCACCCCTACGGCCCtgtctcccgctccctcctcgccctc
gttttccctctccacccgcgGTATCCACCTTGTACGACcccaaaccctcc
tcctcttttttgggcccaccgcctttcttttcgttGTCCACTACTGCGCT
CTACCAATCGAATCCGAGGCGAAACGTCCCGAAGACTTCAAGCGAGCCCT
AGGACTCTCCATGAGCCTCACAGCTGCCCTGGACGTGGCTATCGGAGCGG
CTGGCTACATCTTCTATGGGGGACTGTCCCCCTTGGTGAGGGACCAGGCA
GGGCAAGTGGTACCCGGATGTGAGCGACCCGTGTGCGATAACGTCCTCAA
AAACATCAGCCCCGGACCCCTCAAAACTATCATCTTCGCCGCGTTTTCTA
TCAATCTGACGTTGACCTACGTCATCATGCTGGCCCCGCCTCGGGAGTAC
GTGGAAGAGGCGATGGTCCGAGGCGACAGTATAATTTCAAGCAAATGGCA
GCGAAATATATGGCGTTCagtcctcgtcatcttcacCTTCATGGTCGCTT
CCTCTGTCCATCAGTTTGGCCTTATCACTGCCTTTGTAGGGGCAATCACG
GACACTCTGCAAGGCTTTGTGCTCCCACCCTTGATTTATGCTGCCACCTT
TGCCGTTTGGATGCcaaaggcagagaaggcgcTAATGATTACCATGAGTA
CGCTTGGTATCGTGTTGATGCTGACCGCCACGTATCAGAATATGAGGGAG
TTGGAGAACTTGGTCCTCAGGTAGATGCTGCTTCAGCTCTTTCCGGCATG
GAGCGAGAGGGGAATCCTCTTGGCCCTTCTGCcgcccttcgtcctcctct
cctgggTCCGCGGCTTCCGGCGCCTCTCCTTTTTGAATGTGCTGGGAAAT
GCCTCGCTCGTTCTGGGCATTATTGCCATCTTCCTCGACGGTTTTTCTCG
CCTCGtagctccctcctcctccacttttccccccgtctcgtcctccttgt
cctccgctcCTAAGCCTCCCACCCCTACGGCCCtgtctcccgctccctcc
tcgccctcgttttccctctccacccgcgGTATCCACCTTGTACGACccca
aaccctcctcctcttttttgggcccaccgcctttcttttcgttGTCCACT
ACTGCGCTCTACCAATCGAATCCGAGGCGAAACGTCCCGAAGACTTCAAG
CGAGCCCTAGGACTCTCCATGAGCCTCACAGCTGCCCTGGACGTGGCTAT
CGGAGCGGCTGGCTACATCTTCTATGGGGGACTGTCCCCCTTGGTGAGGG
ACCAGGCAGGGCAAGTGGTACCCGGATGTGAGCGACCCGTGTGCGATAAC
GTCCTCAAAAACATCAGCCCCGGACCCCTCAAAACTATCATCTTCGCCGC
GTTTTCTATCAATCTGACGTTGACCTACGTCATCATGCTGGCCCCGCCTC
GGGAGTACGTGGAAGAGGCGATGGTCCGAGGCGACAGTATAATTTCAAGC
AAATGGCAGCGAAATATATGGCGTTCagtcctcgtcatcttcacCTTCAT
GGTCGCTTCCTCTGTCCATCAGTTTGGCCTTATCACTGCCTTTGTAGGGG
CAATCACGGACACTCTGCAAGGCTTTGTGCTCCCACCCTTGATTTATGCT
GCCACCTTTGCCGTTTGGATGCcaaaggcagagaaggcgcTAATGATTAC
CATGAGTACGCTTGGTATCGTGTTGATGCTGACCGCCACGTATCAGAATA
TGAGGGAGTTGGAGAACTTGGTCCTCAGGTAGATGCTGCTTCAGCTCTTT
CCGGCATGGAGCGAGAGGGGAATCCTCTTGGCCCTTCTGCcgcccttcgt
cctcctctcctgggTCCGCGGCTTCCGGCGCCTCTCCTTTTTGAATGTGC
TGGGAAATGCCTCGCTCGTTCTGGGCATTATTGCCATCTTCCTCGACGGT
TTTTCTCGCCTCGtagctccctcctcctccacttttccccccgtctcgtc
ctccttgtcctccgctcCTAAGCCTCCCACCCCTACGGCCCtgtctcccg
ctccctcctcgccctcgttttccctctccacccgcgGTATCCACCTTGTA
CGACcccaaaccctcctcctcttttttgggcccaccgcctttcttttcgt
tGTCCACTACTGCGCTCTACCAATCGAATCCGAGGCGAAACGTCCCGAAG
ACTTCAAGCGAGCCCTAGGACTCTCCATGAGCCTCACAGCTGCCCTGGAC
GTGGCTATCGGAGCGGCTGGCTACATCTTCTATGGGGGACTGTCCCCCTT
GGTGAGGGACCAGGCAGGGCAAGTGGTACCCGGATGTGAGCGACCCGTGT
GCGATAACGTCCTCAAAAACATCAGCCCCGGACCCCTCAAAACTATCATC
TTCGCCGCGTTTTCTATCAATCTGACGTTGACCTACGTCATCATGCTGGC
CCCGCCTCGGGAGTACGTGGAAGAGGCGATGGTCCGAGGCGACAGTATAA
TTTCAAGCAAATGGCAGCGAAATATATGGCGTTCagtcctcgtcatcttc
acCTTCATGGTCGCTTCCTCTGTCCATCAGTTTGGCCTTATCACTGCCTT
TGTAGGGGCAATCACGGACACTCTGCAAGGCTTTGTGCTCCCACCCTTGA
TTTATGCTGCCACCTTTGCCGTTTGGATGCcaaaggcagagaaggcgcTA
ATGATTACCATGAGTACGCTTGGTATCGTGTTGATGCTGACCGCCACGTA
TCAGAATATGAGGGAGTTGGAGAACTTGGTCCTCAGGTAGATGCTGCTTC
AGCTCTTTCCGGCATGGAGCGAGAGGGGAATCCTCTTGGCCCTTCTGCcg
cccttcgtcctcctctcctgggTCCGCGGCTTCCGGCGCCTCTCCTTTTT
GAATGTGCTGGGAAATGCCTCGCTCGTTCTGGGCATTATTGCCATCTTCC
TCGACGGTTTTTCTCGCCTCGtagctccctcctcctccacttttcccccc
gtctcgtcctccttgtcctccgctcCTAAGCCTCCCACCCCTACGGCCCt
gtctcccgctccctcctcgccctcgttttccctctccacccgcgGTATCC
ACCTTGTACGACcccaaaccctcctcctcttttttgggcccaccgccttt
cttttcgttGTCCACTACTGCGCTCTACCAATCGAATCCGAGGCGAAACG
TCCCGAAGACTTCAAGCGAGCCCTAGGACTCTCCATGAGCCTCACAGCTG
CCCTGGACGTGGCTATCGGAGCGGCTGGCTACATCTTCTATGGGGGACTG
TCCCCCTTGGTGAGGGACCAGGCAGGGCAAGTGGTACCCGGATGTGAGCG
ACCCGTGTGCGATAACGTCCTCAAAAACATCAGCCCCGGACCCCTCAAAA
CTATCATCTTCGCCGCGTTTTCTATCAATCTGACGTTGACCTACGTCATC
ATGCTGGCCCCGCCTCGGGAGTACGTGGAAGAGGCGATGGTCCGAGGCGA
CAGTATAATTTCAAGCAAATGGCAGCGAAATATATGGCGTTCagtcctcg
tcatcttcacCTTCATGGTCGCTTCCTCTGTCCATCAGTTTGGCCTTATC
ACTGCCTTTGTAGGGGCAATCACGGACACTCTGCAAGGCTTTGTGCTCCC
ACCCTTGATTTATGCTGCCACCTTTGCCGTTTGGATGCcaaaggcagaga
aggcgcTAATGATTACCATGAGTACGCTTGGTATCGTGTTGATGCTGACC
GCCACGTATCAGAATATGAGGGAGTTGGAGAACTTGGTCCTCAGGTAGAT
GCTGCTTCAGCTCTTTCCGGCATGGAGCGAGAGGGGAATCCTCTTGGCCC
TTCTGCcgcccttcgtcctcctctcctgggTCCGCGGCTTCCGGCGCCTC
TCCTTTTTGAATGTGCTGGGAAATGCCTCGCTCGTTCTGGGCATTATTGC
CATCTTCCTCGACGGTTTTTCTCGCCTCGtagctccctcctcctccactt
ttccccccgtctcgtcctccttgtcctccgctcCTAAGCCTCCCACCCCT
ACGGCCCtgtctcccgctccctcctcgccctcgttttccctctccacccg
cgGTATCCACCTTGTACGACcccaaaccctcctcctcttttttgggccca
ccgcctttcttttcgttGTCCACTACTGCGCTCTACCAATCGAATCCGAG
GCGAAACGTCCCGAAGACTTCAAGCGAGCCCTAGGACTCTCCATGAGCCT
CACAGCTGCCCTGGACGTGGCTATCGGAGCGGCTGGCTACATCTTCTATG
GGGGACTGTCCCCCTTGGTGAGGGACCAGGCAGGGCAAGTGGTACCCGGA
TGTGAGCGACCCGTGTGCGATAACGTCCTCAAAAACATCAGCCCCGGACC
CCTCAAAACTATCATCTTCGCCGCGTTTTCTATCAATCTGACGTTGACCT
ACGTCATCATGCTGGCCCCGCCTCGGGAGTACGTGGAAGAGGCGATGGTC
CGAGGCGACAGTATAATTTCAAGCAAATGGCAGCGAAATATATGGCGTTC
agtcctcgtcatcttcacCTTCATGGTCGCTTCCTCTGTCCATCAGTTTG
GCCTTATCACTGCCTTTGTAGGGGCAATCACGGACACTCTGCAAGGCTTT
GTGCTCCCACCCTTGATTTATGCTGCCACCTTTGCCGTTTGGATGCcaaa
ggcagagaaggcgcTAATGATTACCATGAGTACGCTTGGTATCGTGTTGA
TGCTGACCGCCACGTATCAGAATATGAGGGAGTTGGAGAACTTGGTCCTC
AGGTAG

Synonyms

Publications