rna4239, rna4239 (mRNA) Nannochloropsis gaditana

Overview
Namerna4239
Unique Namerna4239
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length516
Alignment locationCM002463.1:47752..48445 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100580g2.4592.mrna
Orig protein idgnl|cribi|Naga_100580g2.4592
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:47752..48445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100580g2gene4082Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4239rna4239-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26444.1cds4229Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4239 ID=rna4239|Name=rna4239|organism=Nannochloropsis gaditana|type=mRNA|length=516bp
TTCCAAACGACAGGTGTATTGAGGAGCGTGAATCCACTGTAGATTCTAGC
GGAATGGAGATCAAAGTTAAAGGACCAAAAAGCTTTAGAGTTTTTCAACT
GTGGTCAACAGCTTTCCTAGTGGCACTCCTCCTACCCATGCCCTTCCACC
TACAGGCTTTCACGTCCTCGCACCTTCCAGCGTCTTCATCCTCACATTCT
GCGTGTTCCTCCCCCTCCCGCTACCTCCGCCTGCGCATGTCAACGGGGAT
GGAGCCTCCTAAGGTGCTTTGCTACGGATGATCGTCTCGGTGGCGCTCCC
GCGAACGTAGCGTGTGGATTGGCCAGGCTGGGCACTTCGGTGGCTTTCCT
GGGGCGCCTAGGCGAGGATGAGATTGGAAGGCAGTTCTTAGAAGTTTTTA
AGGTGAAAAAGAATAACAGAAGGGAAGGAAGGGAGAACGGAAGGATTGAT
TGGGATTGTTTACGCCTTGGACTTGGAAGACAACCCCAACTCAAGGAAGA
ACGCGTGACGCCTCCC
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protein sequence of rna4239

>rna4239-protein ID=rna4239-protein|Name=rna4239|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
METSRHEEEQLKNGDTDSPSERSFLLPTALVVRSLSSESQYASLGGPATP
SCSPAAADKESTRLRKRPRKLQGYVGLSAERRPGNVVAV
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mRNA from alignment at CM002463.1:47752..48445+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4239 ID=rna4239|Name=rna4239|organism=Nannochloropsis gaditana|type=mRNA|length=694bp|location=Sequence derived from alignment at CM002463.1:47752..48445+ (Nannochloropsis gaditana)
ACAGGCAAAAATACAGCAGCAGGGAAAAATACCGCTCGATTTGTAGGCTC
ACTACTCACTTGCggctcttcttctcgcttTGATTCGAGCTTGTTTTCAT
ATTCGTGCCGTCCAAAACACGGGGGGCAGCAATGGAGACTTCGAGACACG
AAGAAGAACAATTGAAGAATGGAGACACCGATAGTCCGAGTGAGCGGTCT
TTTCTTTTGCCAACTGCATTGGTGGTGCGTTCACTCTCGTCTGAAAGTCA
GGTAGGACGGCACGTAGGGCTGTTGGAAACTTCGTGCTCTAAGAGATCGA
GGCGTTACGTCATCATTTTCGGAGATGTCTTGCGCGTCCAGAATTTAATG
TAAAAGCGACGAGTACGTGCATGTAGGGACAATCACGACCGATAAGATAG
GGAAGGCgagcaggaagagagcaaACAGAAGGCGCTTGGCGCCTGATATG
ATCTCTCGTGTATCCGAACTCGAAAACATTCCATCACCACGTCCTCTCAG
ACACACTATTCTTCTCTTTATATTTTCCCTTACCCTTGTCTTAGTATGCG
AGCCTAGGAggccccgccacgccctcttGCTCTCCAGCGGCGGCTGACAA
GGAGTCAACGAGACTGCGGAAGCGACCGAGGAAATTGCAAGGGTATGTGG
GGCTCAGTGCTGAGAGGCGCCCCGGGAACGTCGTGGCGGTCTAG
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Coding sequence (CDS) from alignment at CM002463.1:47752..48445+

>rna4239 ID=rna4239|Name=rna4239|organism=Nannochloropsis gaditana|type=CDS|length=540bp|location=Sequence derived from alignment at CM002463.1:47752..48445+ (Nannochloropsis gaditana)
ATGGAGACTTCGAGACACGAAGAAGAACAATTGAAGAATGGAGACACCGA
TAGTCCGAGTGAGCGGTCTTTTCTTTTGCCAACTGCATTGGTGGTGCGTT
CACTCTCGTCTGAAAGTCAGTATGCGAGCCTAGGAggccccgccacgccc
tcttGCTCTCCAGCGGCGGCTGACAAGGAGTCAACGAGACTGCGGAAGCG
ACCGAGGAAATTGCAAGGGTATGTGGGGCTCAGTGCTGAGAGGCGCCCCG
GGAACGTCGTGGCGGTCTAGATGGAGACTTCGAGACACGAAGAAGAACAA
TTGAAGAATGGAGACACCGATAGTCCGAGTGAGCGGTCTTTTCTTTTGCC
AACTGCATTGGTGGTGCGTTCACTCTCGTCTGAAAGTCAGTATGCGAGCC
TAGGAggccccgccacgccctcttGCTCTCCAGCGGCGGCTGACAAGGAG
TCAACGAGACTGCGGAAGCGACCGAGGAAATTGCAAGGGTATGTGGGGCT
CAGTGCTGAGAGGCGCCCCGGGAACGTCGTGGCGGTCTAG
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Synonyms
Publications