EWM26444.1, cds4229 (CDS) Nannochloropsis gaditana

Overview
NameEWM26444.1
Unique Namecds4229
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:47883..48002 +
Alignment locationCM002463.1:48296..48445 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26444.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100580g2.4592.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:47883..48002 +
CM002463.1supercontigCM002463.1:48296..48445 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM26444.1 vs. NCBI_GenBank
Match: gi|585108490|gb|EWM26444.1| (hypothetical protein Naga_100580g2 [Nannochloropsis gaditana])

HSP 1 Score: 179.104 bits (453), Expect = 4.166e-57
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 
Query:    1 METSRHEEEQLKNGDTDSPSERSFLLPTALVVRSLSSESQYASLGGPATPSCSPAAADKESTRLRKRPRKLQGYVGLSAERRPGNVVAV 89
            METSRHEEEQLKNGDTDSPSERSFLLPTALVVRSLSSESQYASLGGPATPSCSPAAADKESTRLRKRPRKLQGYVGLSAERRPGNVVAV
Sbjct:    1 METSRHEEEQLKNGDTDSPSERSFLLPTALVVRSLSSESQYASLGGPATPSCSPAAADKESTRLRKRPRKLQGYVGLSAERRPGNVVAV 89
[Close]
BLAST of EWM26444.1 vs. NCBI_GenBank
Match: gi|553191611|ref|XP_005855412.1| (amino acid transport protein [Nannochloropsis gaditana CCMP526] >gi|422293643|gb|EKU20943.1| amino acid transport protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 147.517 bits (371), Expect = 8.313e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    2 ETSRHEEEQLKNGDTDSPSERSFLLPTALVVRSLSSESQYASLGGPATPSCSPAAADKESTRLRKRPRKLQG 73
            ETSRHEEEQLKNGDTDSPSERSFLLPTALVVRSLSSESQYASLGGPATPSCSPAAADKESTRLRKRPRKLQG
Sbjct:    3 ETSRHEEEQLKNGDTDSPSERSFLLPTALVVRSLSSESQYASLGGPATPSCSPAAADKESTRLRKRPRKLQG 74
[Close]
BLAST of EWM26444.1 vs. NCBI_GenBank
Match: gi|553179064|ref|XP_005852644.1| (amino acid transport protein [Nannochloropsis gaditana CCMP526] >gi|422295890|gb|EKU23189.1| amino acid transport protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.0182 bits (175), Expect = 9.416e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 
Query:   40 QYASLGGPATPSCSPAAADKESTRLRKRPRKLQG 73
            +YASLGGPATPSCSPAAADKESTRLRKRPRKLQG
Sbjct:    7 RYASLGGPATPSCSPAAADKESTRLRKRPRKLQG 40
The following BLAST results are available for this feature:
BLAST of EWM26444.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108490|gb|EWM26444.1|4.166e-57100.00hypothetical protein Naga_100580g2 [Nannochloropsi... [more]
gi|553191611|ref|XP_005855412.1|8.313e-40100.00amino acid transport protein [Nannochloropsis gadi... [more]
gi|553179064|ref|XP_005852644.1|9.416e-1397.06amino acid transport protein [Nannochloropsis gadi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4239rna4239Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications