rna4238, rna4238 (mRNA) Nannochloropsis gaditana

Overview
Namerna4238
Unique Namerna4238
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length958
Alignment locationCM002463.1:46774..47580 -

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Properties
Property NameValue
Productcarbohydrate kinase
Orig transcript idgnl|cribi|Naga_100580g1.4591.mrna
Orig protein idgnl|cribi|Naga_100580g1.4591
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:46774..47580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100580g1gene4081Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4238rna4238-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26443.1cds4228Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4238 ID=rna4238|Name=rna4238|organism=Nannochloropsis gaditana|type=mRNA|length=958bp
GAAGTTGCGATAAATCATGACGGCGGGCAAATATCTGGTTATTGGGGGAA
CGGGGGGAATCGGACGCATGCTAGCAAATCGACTGGTGATGAAATATCAC
AAGGTGCATTTGATCTCGCGCCACCAGGATCAGCTAAATCATCTGGCGTC
CTCGTTACACGCGCCTGGAGACACAGGAACGCACACGGGAGTGGAAGGAA
CTGTGGGCTTCACCGACGTGGACGTGACGGACACGGCAGCCCTCGAGAAA
GCCATCAAAGGGATGGGCCCGCTCAACGGCCTTGCCTACTGCGTGGGGAG
CATCAACCTGAAGCCCCTTAAGGCCACCACATCCGACGACTTCCTTCAGG
CCTTCATGCTCAACACTTTAGGCGCCGCCACCGCCATCCGCGCCGCGCTG
CCAGGCCTAAGCGCCCAGTATAAGAAAAGCGGGGAGGCCGGTAGCGTCGT
CCTCTTCTCCTCCGTGGCCGTGCAGCAAGGGTTTCCCAACCACGCCATCA
TCAGTGCCTGCAAAGGCGGCGTCGAGGGCTTGACACGCGCCCTCGCCGCC
GAGCTTGCTCCCTCCGTCCGCGTCAACGCGGTGGCCCCTTCCTTAACAGA
TACGCCGCTCGCCCAAGTCCTGACCCGGTCGCAGCCCATGAAGGAGGCGA
TCGCCAAGGCCCACCCCATCCCCCGGCTCGGTCGCGGAGACGACGCAGCG
GCAGCGGCGGCTTTTCTCTTGGACAACTCGGAGTCGTCCTGGATAACGGG
GCAGATTGTGGGCGTGGACGGAGGGCGGTCGGTGGTACGAAAATGAGGAG
GAAGGGGCCTAGAAGAGGAGAGACGAGGACAGAGGGGTGGGGGGATCGGA
GGATAGCATTGATGGACGGGGTTTGACGATGGAGGGAGGATGCGGCGGGG
CGTGTAAGTAGAGAGGAAATTTCAAATTAACAAGGTAAACACTAGGGCGC
CACACCGA
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protein sequence of rna4238

>rna4238-protein ID=rna4238-protein|Name=rna4238|organism=Nannochloropsis gaditana|type=polypeptide|length=75bp
MEIKVKGPKSFRVFQLWSTAFLVALLLPMPFHLQAFTSSHLPASSSSHSA
CSSPSRYLRLRMSTGMEPPKVLCYG
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mRNA from alignment at CM002463.1:46774..47580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4238 ID=rna4238|Name=rna4238|organism=Nannochloropsis gaditana|type=mRNA|length=807bp|location=Sequence derived from alignment at CM002463.1:46774..47580- (Nannochloropsis gaditana)
TTCCAAACGACAGGTGTATTGAGGAGCGTGAATCCACTGTAGATTCTAGC
GGAATGGAGATCAAAGTTAAAGGACCAAAAAGCTTTAGAGTTTTTCAACT
GTGGTCAACAGCTTTCCTAGTGGCACTCCTCCTACCCATGCCCTTCCACC
TACAGGTTCGTTTTGAAGCACAGTATCGAGTTATACGAGGGCTAGCATGA
CGTGTGCTCATTTGTATAATCCCTGTTGCTTACTGGCCCTCCAGGCTTTC
ACGTCCTCGCACCTTCCAGCGTCTTCATCCTCACATTCTGCGTGTTCCTC
CCCCTCCCGCTACCTCCGCCTGCGCATGTCAACGGGGATGGAGCCTCCTA
AGGTGCTTTGCTACGGTGAGGCCCTTGTTGATCGTCTGGGACCCTTGGGT
GGTGACCCGGCGACTGATCTGCCCGTGGTACGTTTTCGACAAAGACCTCC
CTTGCCCTTCGTCCAGCCGAATTTTGGCCCGACGTATCAGCCCTGATACG
AGCAATCCCATACTCCATCGTACCCTCATATCTCCGCGCACTCACCATCC
TTTTATACTGAGATCAGGATGATCGTCTCGGTGGCGCTCCCGCGAACGTA
GCGTGTGGATTGGCCAGGCTGGGCACTTCGGTGGCTTTCCTGGGGCGCCT
AGGCGAGGATGAGATTGGAAGGCAGTTCTTAGAAGTTTTTAAGGTGAAAA
AGAATAACAGAAGGGAAGGAAGGGAGAACGGAAGGATTGATTGGGATTGT
TTACGCCTTGGACTTGGAAGACAACCCCAACTCAAGGAAGAACGCGTGAC
GCCTCCC
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Coding sequence (CDS) from alignment at CM002463.1:46774..47580-

>rna4238 ID=rna4238|Name=rna4238|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at CM002463.1:46774..47580- (Nannochloropsis gaditana)
GATGAGCTTTCACGTCCTCGCACCTTCCAGCGTCTTCATCCTCACATTCT
GCGTGTTCCTCCCCCTCCCGCTACCTCCGCCTGCGCATGTCAACGGGGAT
GGAGCCTCCTAAGGTGCTTTGCTACGATGGAGATCAAAGTTAAAGGACCA
AAAAGCTTTAGAGTTTTTCAACTGTGGTCAACAGCTTTCCTAGTGGCACT
CCTCCTACCCATGCCCTTCCACCTACAGGATGAGCTTTCACGTCCTCGCA
CCTTCCAGCGTCTTCATCCTCACATTCTGCGTGTTCCTCCCCCTCCCGCT
ACCTCCGCCTGCGCATGTCAACGGGGATGGAGCCTCCTAAGGTGCTTTGC
TACGATGGAGATCAAAGTTAAAGGACCAAAAAGCTTTAGAGTTTTTCAAC
TGTGGTCAACAGCTTTCCTAGTGGCACTCCTCCTACCCATGCCCTTCCAC
CTACAGGATGAGCTTTCACGTCCTCGCACCTTCCAGCGTCTTCATCCTCA
CATTCTGCGTGTTCCTCCCCCTCCCGCTACCTCCGCCTGCGCATGTCAAC
GGGGATGGAGCCTCCTAAGGTGCTTTGCTACGATGGAGATCAAAGTTAAA
GGACCAAAAAGCTTTAGAGTTTTTCAACTGTGGTCAACAGCTTTCCTAGT
GGCACTCCTCCTACCCATGCCCTTCCACCTACAG
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Synonyms
Publications