EWM26443.1, cds4228 (CDS) Nannochloropsis gaditana

Overview
NameEWM26443.1
Unique Namecds4228
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:47426..47527 -
Alignment locationCM002463.1:47216..47336 -
Alignment locationCM002463.1:47009..47013 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26443.1
Productcarbohydrate kinase
Orig transcript idgnl|cribi|Naga_100580g1.4591.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:47426..47527 -
CM002463.1supercontigCM002463.1:47216..47336 -
CM002463.1supercontigCM002463.1:47009..47013 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Homology
[Close]
BLAST of EWM26443.1 vs. NCBI_GenBank
Match: gi|585108489|gb|EWM26443.1| (carbohydrate kinase [Nannochloropsis gaditana])

HSP 1 Score: 152.14 bits (383), Expect = 8.787e-47
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:    1 MEIKVKGPKSFRVFQLWSTAFLVALLLPMPFHLQAFTSSHLPASSSSHSACSSPSRYLRLRMSTGMEPPKVLCYG 75
            MEIKVKGPKSFRVFQLWSTAFLVALLLPMPFHLQAFTSSHLPASSSSHSACSSPSRYLRLRMSTGMEPPKVLCYG
Sbjct:    1 MEIKVKGPKSFRVFQLWSTAFLVALLLPMPFHLQAFTSSHLPASSSSHSACSSPSRYLRLRMSTGMEPPKVLCYG 75
[Close]
BLAST of EWM26443.1 vs. NCBI_GenBank
Match: gi|553191629|ref|XP_005855418.1| (fructokinase [Nannochloropsis gaditana CCMP526] >gi|422293649|gb|EKU20949.1| fructokinase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 109.383 bits (272), Expect = 2.236e-27
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0 
Query:    1 MEIKVKGPKSFRVFQLWSTAFLVALLLPMPFHLQAFTSSHLPASSSSHSACSSPSRYLRLRMSTGMEPPKVLCYG 75
            ME KVKGPKSFRVF LWSTAFLVALLLPMPFHLQAFTSSHL ASSSSH+A SSPSR LRL MSTGMEPPKVLCYG
Sbjct:    1 MEFKVKGPKSFRVFPLWSTAFLVALLLPMPFHLQAFTSSHLLASSSSHAASSSPSRCLRLPMSTGMEPPKVLCYG 75
The following BLAST results are available for this feature:
BLAST of EWM26443.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108489|gb|EWM26443.1|8.787e-47100.00carbohydrate kinase [Nannochloropsis gaditana][more]
gi|553191629|ref|XP_005855418.1|2.236e-2790.67fructokinase [Nannochloropsis gaditana CCMP526] >g... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4238rna4238Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications