|
|
Properties
| Property Name | Value |
|---|
| Product | short chain dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100144g2.5979.mrna |
| Orig protein id | gnl|cribi|Naga_100144g2.5979 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:42587..43929 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4237 ID=rna4237|Name=rna4237|organism=Nannochloropsis gaditana|type=mRNA|length=990bp
CCAAACCCGACAAGAAGATCCCTCTAAAAACGTGGCATCGGTAAGTCTTT
CTCTTGTATGTAACCAGCGCCCACCCTTCACGATCAGCAGGATGAAAATA
ATGCATGGGACTTTGTTGTTTCGAAAAGAGAAGGTGTACCTGGCGGCAAA
TTGAAAATGCCACGATCTGTTCCTCCGCAAGTTATTCCCGCTTTGCCGCT
GATTAAGCATTCGCTACCTTGGATTTTTGGACGTTGTGCGATACTAATTT
AGACGCACTCTACCCACAGAATATCAAAGATTCGGGGTTCTATATATGCA
GAATGTACACAATTTGCGTGGTTTGCTAGCCGTGGTCAGTACAGCGCTTT
TTGTGTGCCTCCTAATTCCTGCAAGGGCCCAAACCCAACCGCACCATTCG
AATATTTTGCAGCGTCCTGACTACACAAGTGGTGACTTTTCTTCAGATAG
AAATGAAAATATAGTAAGTTTAGCATCTGAACGTGTAATAGCGTCGAGTG
AGGAAATAGCTGGAAAGAATGGAGGCTCGCTCGAAGCGGAAGGGCGTGAA
CTTCGCATCGGAGACAGTGCATTCGCTATGATGATGACCCTTAACGCGAA
CTACTTGCGGGTTAATATGTGGAAAGATACAACGCTGTGATATGTTGTAG
TTCACTTATGTTTCATTAGAGATACAAGGAATAAGGTAATGCCCCGTAAT
GGTTTAAATCCATTGAGAATATATTCCACAGCAATGAGGCCGAGCGGAGT
AGTCTTTTTTGGGATCAACTTTTCGTCACCTGGCCATGTACTCCCACATA
TTTAATCCCTGTACACATCAATGTCTCAATTATGCTTTCTCATACACGAA
TTTCGAGTTACTTTTTCGGATGGGGAGGCATTAGTTGTCTCTAATTGAGT
TCAAGGTTCCTGATATGGCCGGAATTCTGTTATTCCAGTGATAATGCCGG
TTGTTGGTTCATGGTTCAAAATACGAAGATCGCGCATTTC back to topprotein sequence of rna4237 >rna4237-protein ID=rna4237-protein|Name=rna4237|organism=Nannochloropsis gaditana|type=polypeptide|length=259bp
MTAGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAP
GDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMGPLNGLAYCVGSINLKP
LKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSV
AVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQ
VLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGV
DGGRSVVRK back to topmRNA from alignment at CM002463.1:42587..43929+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4237 ID=rna4237|Name=rna4237|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp|location=Sequence derived from alignment at CM002463.1:42587..43929+ (Nannochloropsis gaditana)
GAAGTTGCGATAAATCATGACGGCGGGCAAATATCTGGTTATtgggggaa
cggggggaaTCGGACGCATGCTAGCAAATCGACTGGTGATGAAATATCAC
AAGGTGAGCCGAGGTGAAATGGGGGCATCTACAATGCGAAAAAGAGGCCG
ATTTATGAAATGTAGCCCAGCGATATATGTGATGATGAACATTTGTGTGT
TATCAGCTTTTAAAGGTCGTAGACGCCTTGTGTGAAGGAGAGCTCGGGAA
TGGTGTTGAGCGTTAAGAGCCAAGCCTGAGGAAGTCAAGTCTCGTTTCGC
AGAGCAGTCAAACAGAAACGACCGACATCCTATCGACAACACGACGATGA
AGCAATCCGTGTCGACCAAGAGTTATTAATGTGATAAACGTACACCATAT
CTGAAGATCTCCTTGGTAATTGCAATCTACATGTTGCGACGAAGGCTTAC
CCGTCCCTCGTTCCGCCCCCtattcctccacctctcagGTGCATTTGATC
TCGCGCCACCAGGATCAGCTAAATCATCTGGCGTCCTCGTTACACGCGCC
TGGAGACACAGGAACGCACACGGGAGTGGAAGGAACTGTGGGCTTCACCG
ACGTGGACGTGACGGACACGGCAGCCCTCGAGAAAGCCATCAAAGGGATG
GGCCCGCTCAACGGCCTTGCCTACTGCGTGGGGAGCATCAACCTGAAGCC
CCTTAAGGCCACCACATCCGACGACTTCCTTCAGGCCTTCATGCTCAACA
CTTTaggcgccgccaccgccatccGCGCCGCGCTGCCAGGCCTAAGCGCC
CAGTATAAGAAAAGCGGGGAGGCCGGTagcgtcgtcctcttctcctccgt
ggCCGTGCAGCAAGGGTTTCCCAACCACGCCATCATCAGTGCCTGCAAAG
GCGGCGTCGAGGGCTTGACACGCGCCCTCGCCGCCGAGcttgctccctcc
gtccgcgTCAACGCGGTGGCCCCTTCCTTAACAGATACGCCGCTCGCCCA
AGTCCTGACCCGGTCGCAGCCCATGAAGGAGGCGATCGCCAAGgcccacc
ccatcccccgGCTCGGTCGCGGAGACGacgcagcggcagcggcggcttTT
CTCTTGGACAACTCGGAGTCGTCCTGGATAACGGGGCAGATTGTGGgcgt
ggacggagggcggtcgGTGGTacgaaaatgaggaggaaggggcctaGAAG
AGGAGAGACGAGGacagaggggtggggggatcGGAGGATAGCATTGATGG
ACGGGGTttgacgatggagggaggatgcggcggGGCGTGTAAGTAGAGAG
GAAATTTCAAATTAACAAGGTAAACACTAGGGCGCCACACCGA back to topCoding sequence (CDS) from alignment at CM002463.1:42587..43929+ >rna4237 ID=rna4237|Name=rna4237|organism=Nannochloropsis gaditana|type=CDS|length=1560bp|location=Sequence derived from alignment at CM002463.1:42587..43929+ (Nannochloropsis gaditana)
ATGACGGCGGGCAAATATCTGGTTATtgggggaacggggggaaTCGGACG
CATGCTAGCAAATCGACTGGTGATGAAATATCACAAGGTGCATTTGATCT
CGCGCCACCAGGATCAGCTAAATCATCTGGCGTCCTCGTTACACGCGCCT
GGAGACACAGGAACGCACACGGGAGTGGAAGGAACTGTGGGCTTCACCGA
CGTGGACGTGACGGACACGGCAGCCCTCGAGAAAGCCATCAAAGGGATGG
GCCCGCTCAACGGCCTTGCCTACTGCGTGGGGAGCATCAACCTGAAGCCC
CTTAAGGCCACCACATCCGACGACTTCCTTCAGGCCTTCATGCTCAACAC
TTTaggcgccgccaccgccatccGCGCCGCGCTGCCAGGCCTAAGCGCCC
AGTATAAGAAAAGCGGGGAGGCCGGTagcgtcgtcctcttctcctccgtg
gCCGTGCAGCAAGGGTTTCCCAACCACGCCATCATCAGTGCCTGCAAAGG
CGGCGTCGAGGGCTTGACACGCGCCCTCGCCGCCGAGcttgctccctccg
tccgcgTCAACGCGGTGGCCCCTTCCTTAACAGATACGCCGCTCGCCCAA
GTCCTGACCCGGTCGCAGCCCATGAAGGAGGCGATCGCCAAGgcccaccc
catcccccgGCTCGGTCGCGGAGACGacgcagcggcagcggcggcttTTC
TCTTGGACAACTCGGAGTCGTCCTGGATAACGGGGCAGATTGTGGgcgtg
gacggagggcggtcgGTGGTacgaaaatgaATGACGGCGGGCAAATATCT
GGTTATtgggggaacggggggaaTCGGACGCATGCTAGCAAATCGACTGG
TGATGAAATATCACAAGGTGCATTTGATCTCGCGCCACCAGGATCAGCTA
AATCATCTGGCGTCCTCGTTACACGCGCCTGGAGACACAGGAACGCACAC
GGGAGTGGAAGGAACTGTGGGCTTCACCGACGTGGACGTGACGGACACGG
CAGCCCTCGAGAAAGCCATCAAAGGGATGGGCCCGCTCAACGGCCTTGCC
TACTGCGTGGGGAGCATCAACCTGAAGCCCCTTAAGGCCACCACATCCGA
CGACTTCCTTCAGGCCTTCATGCTCAACACTTTaggcgccgccaccgcca
tccGCGCCGCGCTGCCAGGCCTAAGCGCCCAGTATAAGAAAAGCGGGGAG
GCCGGTagcgtcgtcctcttctcctccgtggCCGTGCAGCAAGGGTTTCC
CAACCACGCCATCATCAGTGCCTGCAAAGGCGGCGTCGAGGGCTTGACAC
GCGCCCTCGCCGCCGAGcttgctccctccgtccgcgTCAACGCGGTGGCC
CCTTCCTTAACAGATACGCCGCTCGCCCAAGTCCTGACCCGGTCGCAGCC
CATGAAGGAGGCGATCGCCAAGgcccaccccatcccccgGCTCGGTCGCG
GAGACGacgcagcggcagcggcggcttTTCTCTTGGACAACTCGGAGTCG
TCCTGGATAACGGGGCAGATTGTGGgcgtggacggagggcggtcgGTGGT
acgaaaatga back to top
|