EWM26458.1, cds4227 (CDS) Nannochloropsis gaditana

Overview
NameEWM26458.1
Unique Namecds4227
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:42603..42689 +
Alignment locationCM002463.1:43075..43767 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26458.1
Productshort chain dehydrogenase
Orig transcript idgnl|cribi|Naga_100144g2.5979.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:42603..42689 +
CM002463.1supercontigCM002463.1:43075..43767 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002198DH_sc/Rdtase_SDR
IPR016040NAD(P)-bd_dom
IPR013968PKS_KR
IPR002347Glc/ribitol_DH
Homology
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|553188271|ref|XP_005854764.1| (short chain dehydrogenase [Nannochloropsis gaditana CCMP526] >gi|553191598|ref|XP_005855408.1| short chain dehydrogenase [Nannochloropsis gaditana CCMP526] >gi|422293639|gb|EKU20939.1| short chain dehydrogenase [Nannochloropsis gaditana CCMP526] >gi|422294291|gb|EKU21591.1| short chain dehydrogenase [Nannochloropsis gaditana CCMP526] >gi|585108505|gb|EWM26458.1| short chain dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 524.628 bits (1350), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MTAGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMGPLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVRK 259
            MTAGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMGPLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVRK
Sbjct:    1 MTAGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMGPLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVRK 259          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|517220845|ref|WP_018409663.1| (SDR family oxidoreductase [Methylocystis rosea])

HSP 1 Score: 230.72 bits (587), Expect = 1.800e-72
Identity = 131/254 (51.57%), Postives = 163/254 (64.17%), Query Frame = 0
Query:    6 YLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMGP-LNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVR 258
            YL+ GG+G IG  LA RL  + H VHL+ R + +L  LA+ + A               F+  DVT+ A L +A +  GP L+GLAYCVGSINLKPL   T  DF+  F +N LGAA +++ ALP L A   +     SV+LFS++AV QGF  HA I+  KG VEGLT +LAAELAP VRVN +APSL  TPLA+ L  S  M  AIA+ H + RLG  DD AA  AFLL + E+SWITGQI+GVDGGRS +R
Sbjct:    3 YLIYGGSGAIGSALARRLRHRGHSVHLVGRSEAKLAALATEIDA--------------SFSIADVTNAAGLAEATEAAGPELSGLAYCVGSINLKPLAKLTEADFIADFRVNALGAALSLKNALPALKA---REVAPASVLLFSTIAVTQGFTGHASIAMAKGAVEGLTLSLAAELAPKVRVNCIAPSLIRTPLAKALLASDQMAGAIAQMHALQRLGEPDDVAALGAFLLSD-EASWITGQIMGVDGGRSTLR 238          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|930063701|ref|WP_054165843.1| (short-chain dehydrogenase [alpha proteobacterium AAP38] >gi|929705997|gb|KPF88067.1| short-chain dehydrogenase [alpha proteobacterium AAP38])

HSP 1 Score: 228.409 bits (581), Expect = 1.771e-71
Identity = 133/259 (51.35%), Postives = 164/259 (63.32%), Query Frame = 0
Query:    3 AGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSL---HAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMGPLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVR 258
            A   ++IG TGG G+ LA RL  K H +HL++R   ++  LA +L   HA  D      +   V   D             +G G + GLAYCVGSI +KPLKAT S DFL AF LN LGAATA+RAA  GL A        G+VVLFS+VAV+QGF NHA+I+A KG V GL RA+AAE AP VRVN +APSLT TPLA  L  S+ M + IA  HP+ RLG  DD AA A FLL ++++ WITGQ++ VDGGRS +R
Sbjct:    2 ASPIIIIGATGGTGQALARRLAAKGHALHLVARDAVRVEDLAQNLGATHAVADVMAEDALADAVALGD-------------RGEG-IAGLAYCVGSIVIKPLKATRSADFLTAFNLNLLGAATALRAAEKGLKAAK------GAVVLFSTVAVEQGFTNHAVIAAAKGAVAGLGRAMAAEWAPHVRVNVIAPSLTRTPLAAPLLSSEQMAQGIAAMHPLARLGEADDLAAMADFLL-SADAGWITGQVLAVDGGRSTLR 239          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|519023360|ref|WP_020179235.1| (SDR family oxidoreductase [Methylopila sp. M107])

HSP 1 Score: 226.483 bits (576), Expect = 1.114e-70
Identity = 134/256 (52.34%), Postives = 163/256 (63.67%), Query Frame = 0
Query:    7 LVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTD----TAALEKAIKGMGPLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVR 258
            L+ GG GGIG  LA  L  K   VHL+ R + +L  LA  + A              GFT  DV D    T A E+A KG G L GLAY VG+INLKP     +DDF + F +N LGAA A++AALP L+     + E  S +LFS+VAVQQGF +HA ++  KG VEGL RALAAELAP VRVNA+APSLT+TPLA  LT+S  M +AIA  H + RLG   D AA  AFL+ + E+SWITGQ+ GVDGGRS +R
Sbjct:    6 LIYGGAGGIGSALARALAAKGAGVHLVGRDEAKLKALADEIGA--------------GFTVTDVEDDAGVTRATEEAAKG-GALGGLAYAVGTINLKPFAKLAADDFDRDFRINALGAARALQAALPALN----TAQEGASALLFSTVAVQQGFTSHASVAMAKGAVEGLVRALAAELAPKVRVNAIAPSLTETPLAAPLTKSPQMAQAIAGLHALQRLGTPQDIAALGAFLM-SREASWITGQVFGVDGGRSTLR 241          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|1131010894|ref|WP_075772105.1| (short-chain dehydrogenase [Rhodocista sp. MIMtkB3])

HSP 1 Score: 225.328 bits (573), Expect = 2.414e-70
Identity = 137/261 (52.49%), Postives = 172/261 (65.90%), Query Frame = 0
Query:    3 AGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTD----TAALEKAIKGMGPLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVRK 259
            A   +VIG TGGIG  LA RL  +   + L++R+ D+L  LA SL             G VG    DV D    T A+++A  G G + GLAYCVG+I +KPLKA +++DF++A+ LN  GA TA++AA  GL A        GSVVLFS+VAV+QGFPNH++I++ KG V GL R+LAAE AP+VRVN VAPSLT TPLA  L  S    + IA  HPIPRLG  DD AAAAAFLL + ++SWITGQ +GVDGGRS +R 
Sbjct:    2 AAPIIVIGATGGIGEALARRLSAQKRPLFLVARNGDKLGPLAESL-------------GAVGSAAADVLDDQALTTAVQQADSGDG-IAGLAYCVGTITIKPLKAASAEDFMEAYRLNVAGAVTALKAAEKGLKAAK------GSVVLFSTVAVEQGFPNHSVIASAKGAVAGLARSLAAEWAPAVRVNLVAPSLTRTPLAHPLLTSDQFAQGIANMHPIPRLGEADDQAAAAAFLL-SEDASWITGQTLGVDGGRSTLRN 241          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|1200572264|gb|OUW82978.1| (short-chain dehydrogenase [Thiotrichales bacterium TMED218])

HSP 1 Score: 223.402 bits (568), Expect = 1.324e-69
Identity = 123/253 (48.62%), Postives = 159/253 (62.85%), Query Frame = 0
Query:    5 KYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMGPLN--GLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRS 255
            KYL+IG TG IG  LA +L       HLISR++ +L  ++  L                 FT  DV +   ++K    +   N  GLAYCVGSI+LKPLK  T  D  Q   LN   A  AI+    G   + KK+   GS+VLFSSVA Q+GF NH II++ K  +EGLT  LAAELAPS+RVN +APSLTD+ ++Q + +S+ + EA+AKAHP+ RLG G+D+AA A FLL + ESSW+TGQI+GVDGGRS
Sbjct:    4 KYLIIGATGSIGSSLAQQLKESNQDAHLISRNEGELKSISEKLG--------------FSFTVADVLEDGFVDKIKSDVSDSNIKGLAYCVGSIDLKPLKRVTESDMNQCMKLNLYSAIEAIQ----GFQDELKKNN--GSIVLFSSVAAQKGFTNHTIIASAKAAIEGLTVTLAAELAPSIRVNCIAPSLTDSMISQSMLKSEVVSEALAKAHPLKRLGEGNDSAALAKFLLRD-ESSWVTGQIIGVDGGRS 235          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|1200546776|gb|OUW58692.1| (short-chain dehydrogenase [Pelagibacteraceae bacterium TMED197])

HSP 1 Score: 223.402 bits (568), Expect = 1.607e-69
Identity = 116/256 (45.31%), Postives = 164/256 (64.06%), Query Frame = 0
Query:    2 TAGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMG--PLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRS 255
             A K L++G TG IG  LA ++V    +VHL+ R +  L+ LA  +++               +T  DV +    +K    +G  P+NGLAYCVGSI+LKP+K T   D++Q+F LN + A   IR A   L          GS+VLFS+VAV++GF NH+I+S+ KG VEGLT +LAAE AP++RVN +APSLT + ++  + +++ M E+IAK HP+ RLG G D+++ A FLL ++ SSWITGQI+GVDGGRS
Sbjct:    4 NAMKKLILGATGSIGSSLAKKIVNDGGEVHLVGRDEASLSKLAQEMNST--------------YTVCDVLEENFSDKIFDDLGDTPINGLAYCVGSIDLKPIKITKKSDYMQSFNLNLISAVEIIRKASDSLKQN------KGSIVLFSTVAVKRGFTNHSIVSSAKGAVEGLTVSLAAEFAPNIRVNCIAPSLTKSKISNFILKNEKMAESIAKMHPLKRLGEGSDSSSVANFLLSDN-SSWITGQILGVDGGRS 238          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|1200599124|gb|OUX08613.1| (short-chain dehydrogenase [Pelagibacteraceae bacterium TMED239])

HSP 1 Score: 223.016 bits (567), Expect = 1.798e-69
Identity = 116/253 (45.85%), Postives = 166/253 (65.61%), Query Frame = 0
Query:    5 KYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMG--PLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRS 255
            K L++G TG IG  LA +++    +VHL+ R +  L+ LAS L++               FT  DV +    +K    +G  P+NGLAYCVGSI+LKP+K T   D++Q+F LN + A   IR A   L  Q K     GS+VLFS+VAV++GF NH+I+S+ KG +EGLT +LAAE AP++RVN +APS++ + +A  + +++ M ++IAK HP+ R+G G D+A+ A FLL ++ SSWITGQI+GVDGGRS
Sbjct:    2 KKLILGATGSIGSSLAKKVIADGGEVHLVGRDKSSLSDLASELNST--------------FTTCDVLEENFSDKIFSDIGETPINGLAYCVGSIDLKPIKMTKKSDYMQSFNLNLISATEIIRRASDNLK-QNK-----GSIVLFSTVAVRRGFTNHSIVSSAKGAIEGLTVSLAAEFAPNIRVNCIAPSISKSKIANFILKNEKMADSIAKMHPLKRVGEGSDSASVANFLLSDN-SSWITGQILGVDGGRS 233          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|1200545459|gb|OUW57436.1| (short-chain dehydrogenase [Pelagibacteraceae bacterium TMED197])

HSP 1 Score: 222.631 bits (566), Expect = 3.021e-69
Identity = 115/253 (45.45%), Postives = 164/253 (64.82%), Query Frame = 0
Query:    5 KYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMG--PLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRS 255
            K L++G TG IG  LA ++V    +VHL+ R +  L++LA  +++               +T  DV +    +K    +G  P+NGLAYCVGSI+LKP+K T   D++Q+F LN + A   IR A   L          GS+VLFS+VAV++GF NH+I+S+ KG VEGLT +LAAE AP++RVN +APSLT + ++  + +++ M E+IAK HP+ RLG G D+++ A FLL ++ SSWITGQI+GVDGGRS
Sbjct:    7 KKLILGATGSIGSSLAKKIVNDGGQVHLVGRDEASLSNLAKEINST--------------YTICDVLEENFSDKIFHDLGDTPINGLAYCVGSIDLKPIKITKKSDYMQSFNLNLISAVEIIRKASDSLKQN------KGSIVLFSTVAVKRGFTNHSIVSSAKGAVEGLTVSLAAEFAPNIRVNCIAPSLTKSKISNFILKNEKMAESIAKMHPLKRLGEGSDSSSVANFLLSDN-SSWITGQILGVDGGRS 238          
BLAST of EWM26458.1 vs. NCBI_GenBank
Match: gi|764609126|ref|WP_044429136.1| (NAD(P)-dependent oxidoreductase [Skermanella aerolata] >gi|763834775|gb|KJB95228.1| short-chain dehydrogenase [Skermanella aerolata KACC 11604])

HSP 1 Score: 219.55 bits (558), Expect = 5.694e-68
Identity = 136/262 (51.91%), Postives = 164/262 (62.60%), Query Frame = 0
Query:    1 MTAGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTGTHTGVEGTVGFTDVDVTDTAALEKAIKGMGP----LNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVR 258
            MTA   +V G  GGIG  LA RL      + L  R  D++  LA  L A        GV         DV D AA+   ++  G     + G+AYCVGSI++KPLKAT  +DF+QA+ LN LGA  AIRAA  GL     KS + GSVVLFS+VAVQQGF NHA+I++ KG VEGL R+LAAE AP VRVN VAPSLT TPLA  LT +  M ++IA  H + R+G  +D AA AAFLL   ES WITGQ+ GVDGGRS +R
Sbjct:    1 MTA-PIIVFGANGGIGEALARRLARAGAPLFLTGRSADKIGPLADDLKA------RHGV--------CDVLDEAAVSAIVQEAGQDGEGIAGIAYCVGSIDIKPLKATKDEDFIQAYRLNVLGAVNAIRAAEKGL-----KSAK-GSVVLFSTVAVQQGFANHALIASAKGAVEGLGRSLAAEFAPHVRVNVVAPSLTRTPLAHGLTSNDQMVQSIAGLHALGRIGEPEDIAAMAAFLL-TKESGWITGQVFGVDGGRSSLR 240          
The following BLAST results are available for this feature:
BLAST of EWM26458.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553188271|ref|XP_005854764.1|0.000e+0100.00short chain dehydrogenase [Nannochloropsis gaditan... [more]
gi|517220845|ref|WP_018409663.1|1.800e-7251.57SDR family oxidoreductase [Methylocystis rosea][more]
gi|930063701|ref|WP_054165843.1|1.771e-7151.35short-chain dehydrogenase [alpha proteobacterium A... [more]
gi|519023360|ref|WP_020179235.1|1.114e-7052.34SDR family oxidoreductase [Methylopila sp. M107][more]
gi|1131010894|ref|WP_075772105.1|2.414e-7052.49short-chain dehydrogenase [Rhodocista sp. MIMtkB3][more]
gi|1200572264|gb|OUW82978.1|1.324e-6948.62short-chain dehydrogenase [Thiotrichales bacterium... [more]
gi|1200546776|gb|OUW58692.1|1.607e-6945.31short-chain dehydrogenase [Pelagibacteraceae bacte... [more]
gi|1200599124|gb|OUX08613.1|1.798e-6945.85short-chain dehydrogenase [Pelagibacteraceae bacte... [more]
gi|1200545459|gb|OUW57436.1|3.021e-6945.45short-chain dehydrogenase [Pelagibacteraceae bacte... [more]
gi|764609126|ref|WP_044429136.1|5.694e-6851.91NAD(P)-dependent oxidoreductase [Skermanella aerol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4237rna4237Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications