rna4233, rna4233 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4233
Unique Name	rna4233
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3272
Alignment location	CM002463.1:34121..36153 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100144g6.5969.mrna
Orig protein id	gnl\|cribi\|Naga_100144g6.5969
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:34121..36153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100144g6	gene4076	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26448.1	cds4223	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4233	rna4233-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:34121..36153-
coding sequence from alignment at CM002463.1:34121..36153-

mRNA sequence

>rna4233 ID=rna4233|Name=rna4233|organism=Nannochloropsis gaditana|type=mRNA|length=3272bp
GCCGTTCCAGCTCGACAGTCTCGTGCGGACCAATCTAACTGACGTCCCCC
TACGTATCTTCCAACTTGGAGGGAGTTGCAAAGGCTTCGTGCCTTTGTGT
GTATTAGAGAATGGGCTTTTATTCATCTCATCCGCTCAATTTCCGAGCTT
CGCATGTGGTCATTATGTAATGATGCGTGTTGAATATTGCGATACGGTAT
CACTGTCTATGTGGGATGCGAAGGCTACTCTCACCCATGATACTAACTTT
GATGCCGAAGACCCTTATTCGGGATCATTCAATAATAAACCTGTATAATT
TCATTGCTTTATTCATACCCAGTGTTTTGTAGCCATGCAGGTATCCAAGG
ATGTCCCCCGCAAAAGAGGCCACAATAGGAAAAAGACCTCTGGCTCCTCC
TCTACCACAACTAAATCATCCAGCTCCCACTTGGCACGATGCCCCTCCCA
ACTTACTCCATCCGCTCTTTCAAAACTGGACCCGATGTGGCCATGCTATG
CATGTAGAGCATCTCGAACTAAATGTAGCGGAGGATTTCCTTGTGCCCGA
TGCTCCCGCCTCTCCGTATGTTGCCTGCCCAATAATTGGAAAAGGGAGGA
GCCTATACTGGAGTATGTCCTGACGACCCACAGCCCTAAGCCCTTCGCCG
AGATGTATCTGCAGGCTTTCGAGCGGCTCTTCATCGCGGGCAAGATTCGA
CGCGACAGTGCCCTGCGAACTTTGAAGATGTGGGAATTTCTTTCCTCGCT
TGCTGGAGCAGACGTGACGCTGGGCGTGGCGTCGCACGTTCAGAAACGCT
TCAACGTGTCGGCCATCGAGTTGGAGGAACCCATGCGGATGCTTCAAGAC
CCCCCTTCGCATGTCCGGTACCAACGGCTCCAGCAGTACCAATCGAGCGC
GGCTAGCCAGGCCCGGACGCAGCAGCTTAAGGAGACGGAGATCTTCAAGC
GGGAGAACGAGGGCACACGGGCCTCCAGGGCCTCTCTGCTCATGTTCGTG
ACCAACGGATCCACCATGTGGGCGGCCTGCAATGAATTCCACGCCGCTCG
CCTCAAGGAGGCAACGGAGCTGTGGGACAAGGCTTTGCAACGCAAGCTGA
TTTGGTCGTATCTGATGGCGCCGCTTTATGCGCCCGAGGACCGACGCACC
TACATCGATAATATAGTGGAGATGATTTTCGGGCACGAGAAACTGACGAA
AACCATGTTCTTTAAGATGTACGATAAGGACGGGAGCGTGAAACTCTGCC
TGCACACTGCTCGGACCATACGCCTGGGGCCGCACACGACCGGGATCACC
TTCAAGATCGAGAGTGAGTAGGCCTGCGTAGAATTAGCTGGAAACGTTCT
CACAAAGTCAGCCTGTCATCCCTGCCCCTTGGCGCCTTCGATGTTTTCAC
ACGATTGCCTCTCTATTTTGGCTCCATGTAATCATTCAATGCATCCGAAG
TCCCACGTTTAAAATCACAGTACACGTTCCCACCCTTTTCCCCTACCATT
ACTTCCCCCTTCCTCCAACCTCCTGGACCCCTCCCCCCCTCAGTCGTTCC
TCCGTCCCGGCATCTGACCATGAACGCGGGCTCAAACCGTGCGACCGGTC
GCGTGCGCTCGACCTGGACCAGCGCCCGGGAAGACAAAGGGCGGCACTGT
GTGGATGGCCACCAGGCTCCATCGACGGGCTTGATCCCAGCAGGCGCCAA
GCAGGACGGGACGCGTCTGAGCACGGACGTGGCGTGGCCAGGAGGGGGCG
CAGCGGGCAGAAGTGAGGCCCGAGCCCCAGCCAGCATGTGCATTCCCGGC
GTGGCAGCGATCCCTTTCCCCGGCGCCAGCGCCAACTTCGCTGCCGGAAT
GTCCGGGGGGGCTTCTCAGTTGCCGGCAGGGCGACCTCAGGCGGGGGAGC
TGGCACAGGCGGGGGAGCTGGCACACGCATCGCAACGCAAGGGAGTCACG
GAGGGCCTTTGGTCCGCGCTGGATGCTCCGTCTTTCTCGGCACGCATCGC
CTCCATGTCTAACGCGGACATCGAGGCTCTCTTCGCGGGGAAGAAAACGA
ACTTCAACGCAGCGCGAGGTCGGGGTGGAAGAGGTGGCGGGCGTATCGCA
GGAAGGGGACAGAGAAAATCGCTGCAAGCAGTGAGGTCAGAAGTCAGCGG
GGAGGTCCGCCCTCCGGTCTCGGTGCCCCAGTCCGTGAACTCGAACGTGA
AATGTCGAGGGAACGAAGGCACCAAGAGCCAACAAGACGAGAGGCAAGGG
ACGCATTTCGTAGGGCAGCAGCCTGACTCGGCGCGGGACGACGCCACCGG
TCTTTTGCATCACGAGCTTGGCAGCGTCGAAAATGTCAACCAAGACCTGA
AGGGGATGCTGCCTGACAGGAGCGTGGCAGTCGAGAAGGGCCAGGAGAGC
CTTCCTTTCGCTCCAAATCTATCTTCACGTATTCCCTCGCCGGCCTACCG
CGACTGCTGCCTTTCCCCTTTGGAGCCTCTACACGGCTCCCTCACCTCGG
ACACCTGCTCACAGGAGCGAGAAAATCGAAGGGTGGACGAAACCTTGGTG
CCGCAAGGGCTTCAAGATCAAGATTTTTTCGACGAGCAGGGCATGCCCCT
AGTGGACACAGAAAAAATAGGTCTCCCGGGGCCCATTTCTCCTTCTTCCC
TTGCCGTTTCGGCCCATCTTCAGTCCAATACAGAGCACTCAGCTCCCTCT
GCTCCGGGCTACGTAGAATTCTCGGAATATCCCTTAAACATGCTTCAATC
ACAGCTTGCTGGAGAGCAGCAACAAGCGATGCACCTGCTTCAGCATCATG
AGCAAGCCACCGGGGTGGACGATCTGATAGTAAATGAGAAGGAGGTCATA
GACTTGTTTAAAGATGGAGACATAGAAACCTGGTGAGGGTTTCGTAGTAT
TGTGGGAAAGAGGTATATAGATAACGATGTCTTGATGAGGACAAGAGTGC
ATCTTAGACTTTCAAAATTTTCTGAAGTCTCCGTTAAAATTTCGTAAGAA
AGAAGTGAATGGCACATATGTAAACCACTTATAAACCTATGAATGGAGGC
GCAAGCGCTTCAGAATCGAATGAGCATAAAGCGATCATGAATATCATGTC
AGTTCAGACCACCAAAACGAAAGATGAGAAGCATAGCTGCTCACTTATCG
GGCGACTGTCTACGAGAATACAAACTGTTGGAAGTTGTGTGCTTCCAACG
TGAACCAACAATTGAAGAAACTTTGGCGTGCGCATGTCACAAACCAAAAA
TAACATATTCAGAAAATTGACC

protein sequence of rna4233

>rna4233-protein ID=rna4233-protein|Name=rna4233|organism=Nannochloropsis gaditana|type=polypeptide|length=488bp
MPCVLGPMLPNKLTCPRSFCGHGRCLYILAASSIVALVGVLSFVTIFPTF
VSPPSMSSLLASSVTNLPNSSIPSSQPHKLCILTRVRNTPRSLAEWLEYH
HLLGVGHFFLVDDCSDDEGRTAWVLDTYHRLGLLSAYNASHVTQWGCKQS
TSSIWKTMLARFGYKGRVNAGCEYTCGENRVPDEGRLFSFLYHQMLAYAG
SGRNHGCEWTGVFDVDEYLTIQAQEVAGIDLLTFPASLPFALSRLLDART
QENLPVYRLPWVVMGSDGYEKRNPSEGLVIESSSQGSYEPWMLKTLARTD
VIRDWQFSHWPMIREMRGDDPWQVPEPFKTLKEYVERLWSGADEGRTYFL
HAMEDPGGTTPPGAGMEEIACSAPVSSLYLKHYFYRSYEEWEAHRGASFL
KSDGGENTHFYHLRAKWEEGENPDVFRASCRNAYQHNFTVNIMTPLVRQT
LAFRRRQWGERQDARGKDDGETNATAWRPFPPVEAWVL

mRNA from alignment at CM002463.1:34121..36153-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4233 ID=rna4233|Name=rna4233|organism=Nannochloropsis gaditana|type=mRNA|length=2033bp|location=Sequence derived from alignment at CM002463.1:34121..36153- (Nannochloropsis gaditana)
GTGATCCGCCATAAAATATGGCCAGCCTTCTTCTCACCACTCACTCGCCC
CGGGTGGGAACGGACTCTCGGCCCATATTCATATATTCGTACCAAACTTC
TCTATACACCCATCGACAGGCCACGTCGCATTCACGATTTTCAGCACCCT
TTCTTCCATGTGGTTGAGAGGTATGCGTGTATATTTGCCGCATTGTTCTG
AGATGCAAAGTGCTTCCTGAGATGCCTTGTGTCCTAGGTCCAATGCTCCC
CAACAAATTGACGTGTCCTCGCAGTTTTTGTGGTCATGGTCGTTGCCTGT
ACATATTAGCCGCGTCTTCCATTGTCGCTTTGGTTGGAGTATTAAGCTTT
GTAACCATCTTTCCTACATTCGTGTCGCCTCCGTCCATGTCATCACTTCT
TGCCTCATCGGTAACTAATTTGCCCAACTCGAGCATACCCTCCTCCCAGC
CGCACAAGCTATGTATTTTGACACGTGTGCGAAACACTCCTAGGAGCCTT
GCAGAATGGTTGGAGTACCACCATCTGCTGGGCGTGGGACATTTTTTCCT
GGTAGATGATTGTAGCGACGACGAAGGTAGAACCGCCTGGGTGCTCGACA
CGTATCATCGCCTAGGCCTCCTTTCTGCTTACAACGCAAGCCATGTAACC
CAATGGGGATGCAAGCAGTCTACATCTTCTATTTGGAAAACAATGCTAGC
AAGGTTTGGGTACAAAGGCCGGGTTAATGCAGGCTGCGAGTACACGTGCG
GCGAAAACCGGGTGCCAGATGAAGGTCGGCTCTTTTCCTTTCTCTACCAT
CAGATGCTGGCATATGCTGGATCCGGTCGTAACCATGGGTGCGAGTGGAC
GGGAGTCTTTGATGTGGATGAGTATCTGACCATCCAAGCCCAGGAGGTCG
CTGGTATCGATCTCCTTACATTTCCGGCCTCACTCCCCTTCGCCCTCTCC
CGCCTTCTCGATGCCAGAACTCAGGAAAACCTACCGGTCTACCGCCTTCC
GTGGGTCGTGATGGGTTCTGACGGATACGAGAAACGCAACCCATCCGAGG
GTTTAGTCATCGAAAGCTCGTCGCAGGGGTCCTACGAGCCGTGGATGCTG
AAGACTTTGGCGAGGACAGACGTGATCCGGGACTGGCAATTCTCGCACTG
GCCCATGATAAGGGAAATGAGAGGCGATGATCCTTGGCAGGTACCCGAAC
CTTTCAAAACTTTAAAGGAATATGTTGAACGGTTGTGGTCGGGAGCGGAC
GAGGGCCGCACGTATTTTCTCCACGCCATGGAGGACCCCGGCGGCACGAC
ACCACCAGGCGCAGGGATGGAAGAGATAGCTTGCTCCGCCCCCGTGTCCT
CCTTGTACTTGAAACACTATTTCTATCGATCCTACGAGGAATGGGAGGCA
CACAGAGGCGCATCGTTCTTGAAGTCGGATGGGGGGGAGAACACGCATTT
CTATCATCTCCGCGCCAAGTGGGAGGAAGGGGAAAATCCGGACGTGTTCA
GGGCTTCTTGTCGGAATGCATATCAGCACAACTTTACTGTAAACATAATG
ACACCTCTTGTCCGCCAGACTTTGGCATTTCGACGACGCCAATGGGGTGA
GAGACAAGATGCAAGGGGAAAAGACGATGGGGAAACAAATGCGACGGCGT
GGAGGCCTTTTCCACCCGTTGAGGCCTGGGTATTGTGATTGGGAACCATT
CCCGAGCTGGAGAGCATGTAATAGACCTAAGATGGATGACAGAGGTATTG
AACGTTCGATCGAAGAAGAGAGCTTCGACCTAACCGCCTGAGTAGCGGCG
TTTGGAGCATGCTCTTCCTCCTCAGTGAAAGACCAACGGCGTGTTTGCTC
AGCAAGCCTACCAGGATCGCGACCACATATTTGTGAATTCCTGTTTATAA
GAGTGGGTGTGTCTGAGTTTATTGCAGTCCAGTAGACGCTGAGATACGAG
TTTGTCTCGGGAGCGTTGTCGAGGCCAAAAGGAGCGGTAGGGCAGATCAA
CTGTCCCCGAACGAACAACTGTGGTCAATTTTC

Coding sequence (CDS) from alignment at CM002463.1:34121..36153-

>rna4233 ID=rna4233|Name=rna4233|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002463.1:34121..36153- (Nannochloropsis gaditana)
ATGCCTTGTGTCCTAGGTCCAATGCTCCCCAACAAATTGACGTGTCCTCG
CAGTTTTTGTGGTCATGGTCGTTGCCTGTACATATTAGCCGCGTCTTCCA
TTGTCGCTTTGGTTGGAGTATTAAGCTTTGTAACCATCTTTCCTACATTC
GTGTCGCCTCCGTCCATGTCATCACTTCTTGCCTCATCGGTAACTAATTT
GCCCAACTCGAGCATACCCTCCTCCCAGCCGCACAAGCTATGTATTTTGA
CACGTGTGCGAAACACTCCTAGGAGCCTTGCAGAATGGTTGGAGTACCAC
CATCTGCTGGGCGTGGGACATTTTTTCCTGGTAGATGATTGTAGCGACGA
CGAAGGTAGAACCGCCTGGGTGCTCGACACGTATCATCGCCTAGGCCTCC
TTTCTGCTTACAACGCAAGCCATGTAACCCAATGGGGATGCAAGCAGTCT
ACATCTTCTATTTGGAAAACAATGCTAGCAAGGTTTGGGTACAAAGGCCG
GGTTAATGCAGGCTGCGAGTACACGTGCGGCGAAAACCGGGTGCCAGATG
AAGGTCGGCTCTTTTCCTTTCTCTACCATCAGATGCTGGCATATGCTGGA
TCCGGTCGTAACCATGGGTGCGAGTGGACGGGAGTCTTTGATGTGGATGA
GTATCTGACCATCCAAGCCCAGGAGGTCGCTGGTATCGATCTCCTTACAT
TTCCGGCCTCACTCCCCTTCGCCCTCTCCCGCCTTCTCGATGCCAGAACT
CAGGAAAACCTACCGGTCTACCGCCTTCCGTGGGTCGTGATGGGTTCTGA
CGGATACGAGAAACGCAACCCATCCGAGGGTTTAGTCATCGAAAGCTCGT
CGCAGGGGTCCTACGAGCCGTGGATGCTGAAGACTTTGGCGAGGACAGAC
GTGATCCGGGACTGGCAATTCTCGCACTGGCCCATGATAAGGGAAATGAG
AGGCGATGATCCTTGGCAGGTACCCGAACCTTTCAAAACTTTAAAGGAAT
ATGTTGAACGGTTGTGGTCGGGAGCGGACGAGGGCCGCACGTATTTTCTC
CACGCCATGGAGGACCCCGGCGGCACGACACCACCAGGCGCAGGGATGGA
AGAGATAGCTTGCTCCGCCCCCGTGTCCTCCTTGTACTTGAAACACTATT
TCTATCGATCCTACGAGGAATGGGAGGCACACAGAGGCGCATCGTTCTTG
AAGTCGGATGGGGGGGAGAACACGCATTTCTATCATCTCCGCGCCAAGTG
GGAGGAAGGGGAAAATCCGGACGTGTTCAGGGCTTCTTGTCGGAATGCAT
ATCAGCACAACTTTACTGTAAACATAATGACACCTCTTGTCCGCCAGACT
TTGGCATTTCGACGACGCCAATGGGGTGAGAGACAAGATGCAAGGGGAAA
AGACGATGGGGAAACAAATGCGACGGCGTGGAGGCCTTTTCCACCCGTTG
AGGCCTGGGTATTGTGA

Synonyms

Publications