EWM26448.1, cds4223 (CDS) Nannochloropsis gaditana

Overview
NameEWM26448.1
Unique Namecds4223
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:34466..35932 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26448.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100144g6.5969.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:34466..35932 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM26448.1 vs. NCBI_GenBank
Match: gi|585108495|gb|EWM26448.1| (hypothetical protein Naga_100144g6 [Nannochloropsis gaditana])

HSP 1 Score: 1019.61 bits (2635), Expect = 0.000e+0
Identity = 488/488 (100.00%), Postives = 488/488 (100.00%), Query Frame = 0 
Query:    1 MPCVLGPMLPNKLTCPRSFCGHGRCLYILAASSIVALVGVLSFVTIFPTFVSPPSMSSLLASSVTNLPNSSIPSSQPHKLCILTRVRNTPRSLAEWLEYHHLLGVGHFFLVDDCSDDEGRTAWVLDTYHRLGLLSAYNASHVTQWGCKQSTSSIWKTMLARFGYKGRVNAGCEYTCGENRVPDEGRLFSFLYHQMLAYAGSGRNHGCEWTGVFDVDEYLTIQAQEVAGIDLLTFPASLPFALSRLLDARTQENLPVYRLPWVVMGSDGYEKRNPSEGLVIESSSQGSYEPWMLKTLARTDVIRDWQFSHWPMIREMRGDDPWQVPEPFKTLKEYVERLWSGADEGRTYFLHAMEDPGGTTPPGAGMEEIACSAPVSSLYLKHYFYRSYEEWEAHRGASFLKSDGGENTHFYHLRAKWEEGENPDVFRASCRNAYQHNFTVNIMTPLVRQTLAFRRRQWGERQDARGKDDGETNATAWRPFPPVEAWVL 488
            MPCVLGPMLPNKLTCPRSFCGHGRCLYILAASSIVALVGVLSFVTIFPTFVSPPSMSSLLASSVTNLPNSSIPSSQPHKLCILTRVRNTPRSLAEWLEYHHLLGVGHFFLVDDCSDDEGRTAWVLDTYHRLGLLSAYNASHVTQWGCKQSTSSIWKTMLARFGYKGRVNAGCEYTCGENRVPDEGRLFSFLYHQMLAYAGSGRNHGCEWTGVFDVDEYLTIQAQEVAGIDLLTFPASLPFALSRLLDARTQENLPVYRLPWVVMGSDGYEKRNPSEGLVIESSSQGSYEPWMLKTLARTDVIRDWQFSHWPMIREMRGDDPWQVPEPFKTLKEYVERLWSGADEGRTYFLHAMEDPGGTTPPGAGMEEIACSAPVSSLYLKHYFYRSYEEWEAHRGASFLKSDGGENTHFYHLRAKWEEGENPDVFRASCRNAYQHNFTVNIMTPLVRQTLAFRRRQWGERQDARGKDDGETNATAWRPFPPVEAWVL
Sbjct:    1 MPCVLGPMLPNKLTCPRSFCGHGRCLYILAASSIVALVGVLSFVTIFPTFVSPPSMSSLLASSVTNLPNSSIPSSQPHKLCILTRVRNTPRSLAEWLEYHHLLGVGHFFLVDDCSDDEGRTAWVLDTYHRLGLLSAYNASHVTQWGCKQSTSSIWKTMLARFGYKGRVNAGCEYTCGENRVPDEGRLFSFLYHQMLAYAGSGRNHGCEWTGVFDVDEYLTIQAQEVAGIDLLTFPASLPFALSRLLDARTQENLPVYRLPWVVMGSDGYEKRNPSEGLVIESSSQGSYEPWMLKTLARTDVIRDWQFSHWPMIREMRGDDPWQVPEPFKTLKEYVERLWSGADEGRTYFLHAMEDPGGTTPPGAGMEEIACSAPVSSLYLKHYFYRSYEEWEAHRGASFLKSDGGENTHFYHLRAKWEEGENPDVFRASCRNAYQHNFTVNIMTPLVRQTLAFRRRQWGERQDARGKDDGETNATAWRPFPPVEAWVL 488
[Close]
BLAST of EWM26448.1 vs. NCBI_GenBank
Match: gi|553188287|ref|XP_005854769.1| (hypothetical protein NGA_0116002 [Nannochloropsis gaditana CCMP526] >gi|553191632|ref|XP_005855419.1| hypothetical protein NGA_0116001 [Nannochloropsis gaditana CCMP526] >gi|422293650|gb|EKU20950.1| hypothetical protein NGA_0116001 [Nannochloropsis gaditana CCMP526] >gi|422294296|gb|EKU21596.1| hypothetical protein NGA_0116002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 292/294 (99.32%), Postives = 293/294 (99.66%), Query Frame = 0 
Query:  195 MLAYAGSGRNHGCEWTGVFDVDEYLTIQAQEVAGIDLLTFPASLPFALSRLLDARTQENLPVYRLPWVVMGSDGYEKRNPSEGLVIESSSQGSYEPWMLKTLARTDVIRDWQFSHWPMIREMRGDDPWQVPEPFKTLKEYVERLWSGADEGRTYFLHAMEDPGGTTPPGAGMEEIACSAPVSSLYLKHYFYRSYEEWEAHRGASFLKSDGGENTHFYHLRAKWEEGENPDVFRASCRNAYQHNFTVNIMTPLVRQTLAFRRRQWGERQDARGKDDGETNATAWRPFPPVEAWVL 488
            MLAYAGSGR+HGCEWTGVFDVDEYLTIQAQE AGIDLLTFPASLPFALSRLLDARTQENLPVYRLPWVVMGSDGYEKRNPSEGLVIESSSQGSYEPWMLKTLARTDVIRDWQFSHWPMIREMRGDDPWQVPEPFKTLKEYVERLWSGADEGRTYFLHAMEDPGGTTPPGAGMEEIACSAPVSSLYLKHYFYRSYEEWEAHRGASFLKSDGGENTHFYHLRAKWEEGENPDVFRASCRNAYQHNFTVNIMTPLVRQTLAFRRRQWGERQDARGKDDGETNATAWRPFPPVEAWVL
Sbjct:    1 MLAYAGSGRSHGCEWTGVFDVDEYLTIQAQEDAGIDLLTFPASLPFALSRLLDARTQENLPVYRLPWVVMGSDGYEKRNPSEGLVIESSSQGSYEPWMLKTLARTDVIRDWQFSHWPMIREMRGDDPWQVPEPFKTLKEYVERLWSGADEGRTYFLHAMEDPGGTTPPGAGMEEIACSAPVSSLYLKHYFYRSYEEWEAHRGASFLKSDGGENTHFYHLRAKWEEGENPDVFRASCRNAYQHNFTVNIMTPLVRQTLAFRRRQWGERQDARGKDDGETNATAWRPFPPVEAWVL 294
The following BLAST results are available for this feature:
BLAST of EWM26448.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108495|gb|EWM26448.1|0.000e+0100.00hypothetical protein Naga_100144g6 [Nannochloropsi... [more]
gi|553188287|ref|XP_005854769.1|0.000e+099.32hypothetical protein NGA_0116002 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4233rna4233Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications