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Properties
| Property Name | Value |
|---|
| Product | class 3 |
| Orig transcript id | gnl|cribi|Naga_100144g12.5978.mrna |
| Orig protein id | gnl|cribi|Naga_100144g12.5978 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:17531..19866 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4227 ID=rna4227|Name=rna4227|organism=Nannochloropsis gaditana|type=mRNA|length=1206bp
ATGAAGCACAAGTTTAGATTTAGCGGCTCAGTCTCGCTGCCTCCCTCGTG
GTTACCAGTGCTAGGGATCTTCCTCTCTTTGCGGGCTTCTGCCTTTCAAT
CTGTGTATCTTCGCAAAAACATCGTGTCGCAGCAAACGAGCGCACTGCAT
ATGTACACCACTTTCTACCGCTCACCTTGTCCGCACGAGGACCTACCTCA
CTCTAGAAAATCTCTTGTACGGCTGTGGCAAATTCGATCCGATCAGCAGC
ACACGGAGGATTACTTCCGATTTATTGAAGGAAAAGAGGAGCCTGATAAG
TGTGACCAAGCCAGCGTGATTATTGGAAAGGGTAAACTTGGGCAAGCGCT
GGTTCAGTGGGGGGGTATGGGAGAAGACGATCTGCTTCTCGGGCGTGACG
ACTGTATACCCACCGTCTTGACTGTCTCTAATGGCTGTACCTTGAATATG
TTTCCTATCTATGTATGTGTACCAGAGTGGGAGGTGGAAAGTGTGATCCT
TGGTTGTCCCAAGGAGAAGCGGAACGACTTGGTGTTCATGCAGTCGGCGT
GCCTGGAAACTCTCTTGAAGAGGTACGGGTTGGCGAATAAGAAGACTACA
CAGTGCCTCCCTTACTTCTCGATCTCTCCCTTTGGTCTGCCCGTCGAAGG
GCGCGTACAATACGACGTTAGCAAGACAGATGGTGAGCCGAAGTTTGCCG
GACAGACGGTTGTGTGCGGGACTTGGCGTGGGGCCGTCGCCGAACGTCTT
AGGAAGCAGGACCTGCATGTCGAGGTCATGGATTACACGTACTGGCGGAA
GCATATGCTCGAGCGGCTTCTCTTTGATAGCTTATTCGGCTTATTGGCAT
GCGTTCACGCAGATTCGGGTGAGAAGACGTATGGAGAGCTCGCCCAAAAC
CACTGGGAGGAGATCGACGACATGGTTTGGGAGCTTTCTCGCGCCATCGC
CAACATTATGGCAGTTGTACTTCTGACTCATGTCGAGCGACGCGTGCGCG
GCTTGGCAGAGGGTCCCCATTGGCGAGATAGAAAACCACAAATGCCCACG
TGTAGGGAATACCCTTTCCGGAACGGCATGCTGCGCTCATTGAGCCGCTC
CTTTACCTCCCGAGGCTTTCCGTCCCCAATGCCAACCCACGATGAGTACC
TCGATTTCGTCCGAGAGCGGAAGCTTGTGAGCTATGACGTAGATCAGGAT
ATCTAA back to topprotein sequence of rna4227 >rna4227-protein ID=rna4227-protein|Name=rna4227|organism=Nannochloropsis gaditana|type=polypeptide|length=505bp
MFLQHDYRRWKVVLLKFIGLVQFVRSRQLLRTNDTATPRINNSFIVTHSK
ERKFSDSPHVLHISSVAGPGPENRLLGVPLGGESISFFPLVQIVLDPRRV
QDRSPSRHKLFPSCGFAEPIIDAPGYCPLVRILERGADMNYDSILRGFTT
VKNMYETEKEPAQDDESSLPVRMADIGHPLPFQIEDQALIEKERQTAYWY
YRNILNLYTYVKRCVQAGTATAKPPPYVPRGYHSQRLIFTSSNGTKDPPI
GQSFVKGTHIVVVMRGTIFKTNLVQDETFEYANPSDPGVTSSGLNGRLHK
GFFSEALTLTQQIEMGLDAHPTVDLLSFAGHSLGAAYIQLVSPILALRRP
DLAVEVWNFGAPPAGDTGFVEQFNALLNLRARSFMYIGNGLVTSAPVPFG
IGDIIPQALSLCWPVRGCPGTQNPDMNAAIKYEATGGIVAFYSTDMPNTQ
EWNRVDQVVTLDSSPSACHGCSYLCWSVQGLDDPEDRCYFAEHPWPCPYT
AWDGK back to topmRNA from alignment at CM002463.1:17531..19866+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4227 ID=rna4227|Name=rna4227|organism=Nannochloropsis gaditana|type=mRNA|length=2336bp|location=Sequence derived from alignment at CM002463.1:17531..19866+ (Nannochloropsis gaditana)
TCCCTGGCACTCCTTCGCTAGTACAGCCTCCTCGCATTTCCAAACATTAC
GACATGAAACAGAAGATAATTCATTCCACCTTAGTATACATCGAAAAGGT
AAGGTGAAAGCGGTCTACTTCTGCAAAAATTTAATTTTGCGGTAGCGTCA
ATTGATTTACTCCGACCTTGTCTGAACCCGCTTGGTCCGAGCCCGCCAGC
CATTGCGTGTATAGAGACATGCGAGCCCTAGAGATTACCCAACTCAGCTC
TGATCGATATAGCACGTCTCAATAGAGCAGGTTCAAACCTATATATCTAC
TTTTCTCAGCCTGTGCGCAGGATGTGGCAATATGTTTACTCTTTGATGTA
TTCTGTTCCGACTTCTTGGGTCGCAGGGTCAATCCTTACATTTGTGTCCT
GGATGATATTTCTTTTTAACAGGCTCTGAGGATGTGTTGCCAACAAAATA
TCACATAGCTAATTCATTTAGTCTTTTAAGTGTACAAATCTTGTGTCTAT
CTTTGGTCTAAGTTTAAGGTAATGCTGGGTCTTCAAGTTCTAGGCAATGT
TTCCTCTTGCGTCTCTTTTAGCACCAGCTCTGGTGTGAAGTAATTAATGG
TTTTTTATCTTACGCTTACGCAACAGGGATGTTCTTGCAGCATGATTATC
GGAGATGGAAAGTGGTGCTTCTAAAATTCATCGGTCTAGTGCAATTCGTT
AGATCGCGACAACTCCTGCGAACTAATGACACTGCTACTCCGCGTATCAA
CAATAGCTTTATCGTCACTCACAGCAAAGAACGAAAATTTTCAGATTCCC
CACATGTTCTTCATATTTCGAGCGTCGCTGGACCAGGACCAGAAAACAGG
CTTCTTGGCGTACCATTGGGTGGTGAGAGTATctcattcttccctctcgt
ACAAATCGTCCTTGATCCACGAAGGGTGCAAGATCGATCTCCCAGCAGAC
ACAAGCTATTCCCTTCTTGTGGATTCGCAGAGCCTATTATTGATGCCCCA
GGGTATTGCCCTCTGGTGCGCATACTTGAGAGAGGCGCAGATATGAATTA
CGACTCTATCCTTCGAGGTTTTACCACCGTCAAGAATATGTACGAGACAG
AGAAGGAACCTGCGCAAGACGATGAAAGCTCGCTGCCTGTACGCATGGCC
GACATCGGGCACCCACTTCCTTTCCAAATAGAAGACCAGGCACTTATCGA
GAAGGAGCGCCAGACCGCATATTGGTACTACCGAAACATCCTGAACCTCT
ATACATACGTCAAGCGCTGCGTCCAGGCAGGGACCGCCACAGCCAAGCCC
CCACCGTACGTCCCCCGGGGTTATCATTCGCAACGTTTGATCTTTACATC
TAGCAACGGAACAAAAGATCCACCCATTGGCCAGAGCTTCGTAAAGGGCA
CGCACATAGTGGTAGTTATGCGAGGTACCATTTTTAAGACAAACCTCGTG
CAGGACGAGACTTTCGAGTACGCAAATCCATCCGACCCTGGCGTCACATC
CTCCGGTTTGAATGGACGCTTGCATAAAGGCTTCTTCTCGGAGGCCCTGA
CGCTGACCCAGCAGATAGAAATGGGACTCGATGCTCACCCCACTGTCGAC
TTACTCTCCTTCGCTGGTCACTCCCTCGGCGCAGCTTACATACAACTCGT
AAGCCCCATCCTAGCCCTCCGTCGACCCGACCTGGCGGTAGAGGTCTGGA
ACTTTGGCGCACCGCCCGCAGGAGACACCGGATTCGTAGAGCAATTCAAC
GCCTTGCTCAATCTTCGTGCCCGCAGTTTCATGTACATTGGGAACGGGCT
GGTCACGTctgcccccgtccccttTGGCATCGGCGACATCATTCCTCAGG
CTTTGAGTCTTTGTTGGCCCGTGCGAGGTTGTCCAGGAACACAGAATCCG
GACATGAATGCGGCGATCAAATACGAGGCGACGGGCGGCATCGTGGCCTT
CTACTCGACAGACATGCCCAACACGCAGGAATGGAATCGAGTGGACCAAG
TCGTCACCctcgactcctccccctccgcctgccaCGGCTGCTCCTATCTC
TGCTGGTCTGTACAGGGACTAGACGATCCGGAGGACCGATGTTACTTTGC
GGAACATCCCTGGCCTTGTCCCTACACAGCATGGGACGGCAAATAGAGCC
AATAAAGCTCTTGCAAGATCGTAATAAAAACAAGATATAAAATATGccga
ggaaatggaaaaaagaatcAAATCACTGCGCTCCACGACTGCACGCTCAT
AATACGAGGAAAAATGCAAATCATGTAGCCTTTAAATGCGATGAAACATC
AGTACATAAGAGAAAGACTCCCAATCAATCTGGTTG back to topCoding sequence (CDS) from alignment at CM002463.1:17531..19866+ >rna4227 ID=rna4227|Name=rna4227|organism=Nannochloropsis gaditana|type=CDS|length=1518bp|location=Sequence derived from alignment at CM002463.1:17531..19866+ (Nannochloropsis gaditana)
ATGTTCTTGCAGCATGATTATCGGAGATGGAAAGTGGTGCTTCTAAAATT
CATCGGTCTAGTGCAATTCGTTAGATCGCGACAACTCCTGCGAACTAATG
ACACTGCTACTCCGCGTATCAACAATAGCTTTATCGTCACTCACAGCAAA
GAACGAAAATTTTCAGATTCCCCACATGTTCTTCATATTTCGAGCGTCGC
TGGACCAGGACCAGAAAACAGGCTTCTTGGCGTACCATTGGGTGGTGAGA
GTATctcattcttccctctcgtACAAATCGTCCTTGATCCACGAAGGGTG
CAAGATCGATCTCCCAGCAGACACAAGCTATTCCCTTCTTGTGGATTCGC
AGAGCCTATTATTGATGCCCCAGGGTATTGCCCTCTGGTGCGCATACTTG
AGAGAGGCGCAGATATGAATTACGACTCTATCCTTCGAGGTTTTACCACC
GTCAAGAATATGTACGAGACAGAGAAGGAACCTGCGCAAGACGATGAAAG
CTCGCTGCCTGTACGCATGGCCGACATCGGGCACCCACTTCCTTTCCAAA
TAGAAGACCAGGCACTTATCGAGAAGGAGCGCCAGACCGCATATTGGTAC
TACCGAAACATCCTGAACCTCTATACATACGTCAAGCGCTGCGTCCAGGC
AGGGACCGCCACAGCCAAGCCCCCACCGTACGTCCCCCGGGGTTATCATT
CGCAACGTTTGATCTTTACATCTAGCAACGGAACAAAAGATCCACCCATT
GGCCAGAGCTTCGTAAAGGGCACGCACATAGTGGTAGTTATGCGAGGTAC
CATTTTTAAGACAAACCTCGTGCAGGACGAGACTTTCGAGTACGCAAATC
CATCCGACCCTGGCGTCACATCCTCCGGTTTGAATGGACGCTTGCATAAA
GGCTTCTTCTCGGAGGCCCTGACGCTGACCCAGCAGATAGAAATGGGACT
CGATGCTCACCCCACTGTCGACTTACTCTCCTTCGCTGGTCACTCCCTCG
GCGCAGCTTACATACAACTCGTAAGCCCCATCCTAGCCCTCCGTCGACCC
GACCTGGCGGTAGAGGTCTGGAACTTTGGCGCACCGCCCGCAGGAGACAC
CGGATTCGTAGAGCAATTCAACGCCTTGCTCAATCTTCGTGCCCGCAGTT
TCATGTACATTGGGAACGGGCTGGTCACGTctgcccccgtccccttTGGC
ATCGGCGACATCATTCCTCAGGCTTTGAGTCTTTGTTGGCCCGTGCGAGG
TTGTCCAGGAACACAGAATCCGGACATGAATGCGGCGATCAAATACGAGG
CGACGGGCGGCATCGTGGCCTTCTACTCGACAGACATGCCCAACACGCAG
GAATGGAATCGAGTGGACCAAGTCGTCACCctcgactcctccccctccgc
ctgccaCGGCTGCTCCTATCTCTGCTGGTCTGTACAGGGACTAGACGATC
CGGAGGACCGATGTTACTTTGCGGAACATCCCTGGCCTTGTCCCTACACA
GCATGGGACGGCAAATAG back to top
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