rna4226, rna4226 (mRNA) Nannochloropsis gaditana

Overview
Namerna4226
Unique Namerna4226
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1454
Alignment locationCM002463.1:15787..17237 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100144g13.5975.mrna
Orig protein idgnl|cribi|Naga_100144g13.5975
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:15787..17237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100144g13gene4069Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4226rna4226-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26454.1cds4216Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4226 ID=rna4226|Name=rna4226|organism=Nannochloropsis gaditana|type=mRNA|length=1454bp
GACGAGAAATTAGGTCCCCAAAGACTGGGGTCATCAACTAGCGCCGCGCA
TTTAGGCAGATCTGGTTTGAGAGCGTAATTTGGAACTGCGCCAAATACAA
AGCCATTCCAGTGTGGAGGTAACGCGACAGATAGATGTCCGCAGTCATCA
TATTTGTTCGTCTCAATCTTGCTGCTAAACTGAAAATCTCGGCGACGGGT
CGACCAGAAACCTCCATATGCGAATCCCTCGCTCTCATGGGCAGTCCGGA
AAGGATGACAGGAATCATATATATTTTTGTACTCCTGGTATAAGAACTCG
TCGACAGGCTCCACTTATAATTGCAATAGTTAGGGGTGCATTGCTGTGAG
AATGGCCATCCTTTTGCCTGGAAGCACTGGTCATCGATTTGTGCGAGGAC
TCGGCGAAGGAAAAGGGCGTGGCCTTCGACCAAGAATACTTTGGATAACA
TATTTCGAATGGCGTCGTTGTATGCGCACTTTGCATCGATTGTATCTTTG
TCAAATATGGCAGGATTGCAAAAGGAGGTCATCTGCATGATGACAGTTGC
TTGTGAGGCGAAACTCATCATGACCGTGGCCATGTAAAGGTAGGCCTCGG
CGAACTCGATCAGTCGATTCCACTTATCTGGACCTTCACCCACATTTATC
CTACACATTTGAAAATCAGCAACCTCTTTCGAGTCATATATAGGGGGCGG
GTACTGATCGTAGTTGATCCCCTCGGGCATGCCATCAGGCTTTGTGGTCA
CTCGGCATTCGTTGGCGTTGTCGTTGATCCAGTGCACAACATGCACACGA
AGATTATTCTCGTCCGCGATCACGCCAAACCACTTGTCATAATCTGCTTG
TATGAGATCCAAGGCGGTCTGACATTCGTTCCATGCTCCGGTATATTCGT
TTGTTTTCCAATGCTCAACCTGGTGAAGGCGATGAGGTTTGTCGACGAAG
GAGGCAGATTTCAAGTTAGATCTTCCCTAAAAATGTATTTGAGCCTGTGG
CATTGTTTCGATCGGGAAGGGGGGACGGGAAACAGACATGTTCCTCGGGA
AGCTTCCTTCTATCGGAATACGCGTACCTGCTGGTCGATTTGGGATTGAA
AGTCGTCCTTCTTTTGATTTCGAATGTAGGCCAAGCTTCCAGTTTTTCTT
ACAAAGTTATCGAGGTCGATCTTGTAGAAAACTGAAAACTTGTCTATAAG
GTCTTTGTCGTTGGTAGCATCATACCTTTTAAGGCCTTTTTTCACAGCAG
CTTCAATCTGGGAAGGCGAAATTGCACCAGCCTCTGAACTTGGGGGATCA
AAGAACAGACTAGAAAAGACAAACCCCATAGATGCTATAATTGTGCGTGC
TGCATCGGCAACGGGAAAAGCGGCTCCGATTGCATAGGCCGCCGTAAGGA
GCATATTGGACACACCCTCCACGATATCGTTTGTACTACACTCTTTATCA
TTGC
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protein sequence of rna4226

>rna4226-protein ID=rna4226-protein|Name=rna4226|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MKHKFRFSGSVSLPPSWLPVLGIFLSLRASAFQSVYLRKNIVSQQTSALH
MYTTFYRSPCPHEDLPHSRKSLVRLWQIRSDQQHTEDYFRFIEGKEEPDK
CDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNGCTLNM
FPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTT
QCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERL
RKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQN
HWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPT
CREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDVDQD
I
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mRNA from alignment at CM002463.1:15787..17237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4226 ID=rna4226|Name=rna4226|organism=Nannochloropsis gaditana|type=mRNA|length=1451bp|location=Sequence derived from alignment at CM002463.1:15787..17237- (Nannochloropsis gaditana)
ATGAAGCACAAGTTTAGATTTAGCGGCTCAGTCTCGCTGCCTCCCTCGTG
GTTACCAGTGCTAGGGATCTTCCTCTCTTTGCGGGCTTCTGCCTTTCAAT
CTGTGTATCTTCGCAAAAACATCGTGTCGCAGCAAACGAGCGCACTGCAT
ATGTACACCACTTTCTACCGCTCACCTTGTCCGCACGAGGACCTACCTCA
CTCTAGAAAATCTCTTGTACGGCTGTGGCAAATTCGATCCGATCAGCAGC
ACACGGAGGATTACTTCCGATTTATTGAAGGAAAAGAGGTATGGTATGAG
TGGAGGAGAGAGCAGTATCGAGTTAAAGAACAACAACCAATGCAATTGAG
AAATCAAATGTATGATAATTTGTATCGTGGACATTTTTACATAAAGTTTT
CAGAAATTCTCAAAGTAGTGCGAAAAGAATTCGGTGAATAACTTGCGATG
GCGTCATTCCACCCCACCATATAATATTCCGCCGCGTCTTCTAATAATTT
TCTATTTGTCCTTGCACATAAAATTTTACCCAGGAGCCTGATAAGTGTGA
CCAAGCCAGCGTGATTATTGGAAAGGGTAAACTTGGGCAAGCGCTGGTTC
AGTGGGGGGGTATGGGAGAAGACGATCTGCTTCTCGGGCGTGACGACTGT
ATACCCACCGTCTTGACTGTCTCTAATGGCTGTACCTTGAATATGTTTCC
TATCTATGTATGTGTACCAGAGTGGGAGGTGGAAAGTGTGATCCTTGGTT
GTCCCAAGGAGAAGCGGAACGACTTGGTGTTCATGCAGTCGGCGTGCCTG
GAAACTCTCTTGAAGAGGTACGGGTTGGCGAATAAGAAGACTACACAGTG
CCTCCCTTACTTCTCGATCTCTCCCTTTGGTCTGCCCGTCGAAGGGCGCG
TACAATACGACGTTAGCAAGACAGATGGTGAGCCGAAGTTTGCCGGACAG
ACGGTTGTGTGCGGGACTTGGCGTGGGGCCGTCGCCGAACGTCTTAGGAA
GCAGGACCTGCATGTCGAGGTCATGGATTACACGTACTGGCGGAAGCATA
TGCTCGAGCGGCTTCTCTTTGATAGCTTATTCGGCTTATTGGCATGCGTT
CACGCAGATTCGGGTGAGAAGACGTATGGAGAGCTCGCCCAAAACCACTG
GGAGGAGATCGACGACATGGTTTGGGAGCTTTCTCGCGCCATCGCCAACA
TTATGGCAGTTGTACTTCTGACTCATGTCGAGCGACGCGTGCGCGGCTTG
GCAGAGGGTCCCCATTGGCGAGATAGAAAACCACAAATGCCCACGTGTAG
GGAATACCCTTTCCGGAACGGCATGCTGCGCTCATTGAGCCGCTCCTTTA
CCTCCCGAGGCTTTCCGTCCCCAATGCCAACCCACGATGAGTACCTCGAT
TTCGTCCGAGAGCGGAAGCTTGTGAGCTATGACGTAGATCAGGATATCTA
A
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Coding sequence (CDS) from alignment at CM002463.1:15787..17237-

>rna4226 ID=rna4226|Name=rna4226|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002463.1:15787..17237- (Nannochloropsis gaditana)
GAGCCTGATAAGTGTGACCAAGCCAGCGTGATTATTGGAAAGGGTAAACT
TGGGCAAGCGCTGGTTCAGTGGGGGGGTATGGGAGAAGACGATCTGCTTC
TCGGGCGTGACGACTGTATACCCACCGTCTTGACTGTCTCTAATGGCTGT
ACCTTGAATATGTTTCCTATCTATGTATGTGTACCAGAGTGGGAGGTGGA
AAGTGTGATCCTTGGTTGTCCCAAGGAGAAGCGGAACGACTTGGTGTTCA
TGCAGTCGGCGTGCCTGGAAACTCTCTTGAAGAGGTACGGGTTGGCGAAT
AAGAAGACTACACAGTGCCTCCCTTACTTCTCGATCTCTCCCTTTGGTCT
GCCCGTCGAAGGGCGCGTACAATACGACGTTAGCAAGACAGATGGTGAGC
CGAAGTTTGCCGGACAGACGGTTGTGTGCGGGACTTGGCGTGGGGCCGTC
GCCGAACGTCTTAGGAAGCAGGACCTGCATGTCGAGGTCATGGATTACAC
GTACTGGCGGAAGCATATGCTCGAGCGGCTTCTCTTTGATAGCTTATTCG
GCTTATTGGCATGCGTTCACGCAGATTCGGGTGAGAAGACGTATGGAGAG
CTCGCCCAAAACCACTGGGAGGAGATCGACGACATGGTTTGGGAGCTTTC
TCGCGCCATCGCCAACATTATGGCAGTTGTACTTCTGACTCATGTCGAGC
GACGCGTGCGCGGCTTGGCAGAGGGTCCCCATTGGCGAGATAGAAAACCA
CAAATGCCCACGTGTAGGGAATACCCTTTCCGGAACGGCATGCTGCGCTC
ATTGAGCCGCTCCTTTACCTCCCGAGGCTTTCCGTCCCCAATGCCAACCC
ACGATGAGTACCTCGATTTCGTCCGAGAGCGGAAGCTTGTGAGCTATGAC
GTAGATCAGGATATCTAAATGAAGCACAAGTTTAGATTTAGCGGCTCAGT
CTCGCTGCCTCCCTCGTGGTTACCAGTGCTAGGGATCTTCCTCTCTTTGC
GGGCTTCTGCCTTTCAATCTGTGTATCTTCGCAAAAACATCGTGTCGCAG
CAAACGAGCGCACTGCATATGTACACCACTTTCTACCGCTCACCTTGTCC
GCACGAGGACCTACCTCACTCTAGAAAATCTCTTGTACGGCTGTGGCAAA
TTCGATCCGATCAGCAGCACACGGAGGATTACTTCCGATTTATTGAAGGA
AAAGAGGAGCCTGATAAGTGTGACCAAGCCAGCGTGATTATTGGAAAGGG
TAAACTTGGGCAAGCGCTGGTTCAGTGGGGGGGTATGGGAGAAGACGATC
TGCTTCTCGGGCGTGACGACTGTATACCCACCGTCTTGACTGTCTCTAAT
GGCTGTACCTTGAATATGTTTCCTATCTATGTATGTGTACCAGAGTGGGA
GGTGGAAAGTGTGATCCTTGGTTGTCCCAAGGAGAAGCGGAACGACTTGG
TGTTCATGCAGTCGGCGTGCCTGGAAACTCTCTTGAAGAGGTACGGGTTG
GCGAATAAGAAGACTACACAGTGCCTCCCTTACTTCTCGATCTCTCCCTT
TGGTCTGCCCGTCGAAGGGCGCGTACAATACGACGTTAGCAAGACAGATG
GTGAGCCGAAGTTTGCCGGACAGACGGTTGTGTGCGGGACTTGGCGTGGG
GCCGTCGCCGAACGTCTTAGGAAGCAGGACCTGCATGTCGAGGTCATGGA
TTACACGTACTGGCGGAAGCATATGCTCGAGCGGCTTCTCTTTGATAGCT
TATTCGGCTTATTGGCATGCGTTCACGCAGATTCGGGTGAGAAGACGTAT
GGAGAGCTCGCCCAAAACCACTGGGAGGAGATCGACGACATGGTTTGGGA
GCTTTCTCGCGCCATCGCCAACATTATGGCAGTTGTACTTCTGACTCATG
TCGAGCGACGCGTGCGCGGCTTGGCAGAGGGTCCCCATTGGCGAGATAGA
AAACCACAAATGCCCACGTGTAGGGAATACCCTTTCCGGAACGGCATGCT
GCGCTCATTGAGCCGCTCCTTTACCTCCCGAGGCTTTCCGTCCCCAATGC
CAACCCACGATGAGTACCTCGATTTCGTCCGAGAGCGGAAGCTTGTGAGC
TATGACGTAGATCAGGATATCTAAATGAAGCACAAGTTTAGATTTAGCGG
CTCAGTCTCGCTGCCTCCCTCGTGGTTACCAGTGCTAGGGATCTTCCTCT
CTTTGCGGGCTTCTGCCTTTCAATCTGTGTATCTTCGCAAAAACATCGTG
TCGCAGCAAACGAGCGCACTGCATATGTACACCACTTTCTACCGCTCACC
TTGTCCGCACGAGGACCTACCTCACTCTAGAAAATCTCTTGTACGGCTGT
GGCAAATTCGATCCGATCAGCAGCACACGGAGGATTACTTCCGATTTATT
GAAGGAAAAGAG
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Synonyms
Publications