EWM26454.1, cds4216 (CDS) Nannochloropsis gaditana

Overview
NameEWM26454.1
Unique Namecds4216
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:16950..17237 -
Alignment locationCM002463.1:15787..16704 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26454.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100144g13.5975.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:16950..17237 -
CM002463.1supercontigCM002463.1:15787..16704 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|585108501|gb|EWM26454.1| (hypothetical protein Naga_100144g13 [Nannochloropsis gaditana])

HSP 1 Score: 837.41 bits (2162), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query:    1 MKHKFRFSGSVSLPPSWLPVLGIFLSLRASAFQSVYLRKNIVSQQTSALHMYTTFYRSPCPHEDLPHSRKSLVRLWQIRSDQQHTEDYFRFIEGKEEPDKCDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDVDQDI 401
            MKHKFRFSGSVSLPPSWLPVLGIFLSLRASAFQSVYLRKNIVSQQTSALHMYTTFYRSPCPHEDLPHSRKSLVRLWQIRSDQQHTEDYFRFIEGKEEPDKCDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDVDQDI
Sbjct:    1 MKHKFRFSGSVSLPPSWLPVLGIFLSLRASAFQSVYLRKNIVSQQTSALHMYTTFYRSPCPHEDLPHSRKSLVRLWQIRSDQQHTEDYFRFIEGKEEPDKCDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDVDQDI 401          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|553180283|ref|XP_005853379.1| (hypothetical protein NGA_0116102 [Nannochloropsis gaditana CCMP526] >gi|553191635|ref|XP_005855420.1| hypothetical protein NGA_0116101 [Nannochloropsis gaditana CCMP526] >gi|422293651|gb|EKU20951.1| hypothetical protein NGA_0116101 [Nannochloropsis gaditana CCMP526] >gi|422295684|gb|EKU22983.1| hypothetical protein NGA_0116102 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 466.077 bits (1198), Expect = 2.917e-163
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:  180 MQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDVDQDI 401
            MQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDVDQDI
Sbjct:    1 MQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDVDQDI 222          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|551669787|ref|XP_005837652.1| (hypothetical protein GUITHDRAFT_151218 [Guillardia theta CCMP2712] >gi|428181809|gb|EKX50672.1| hypothetical protein GUITHDRAFT_151218 [Guillardia theta CCMP2712])

HSP 1 Score: 221.09 bits (562), Expect = 4.094e-65
Identity = 121/325 (37.23%), Postives = 189/325 (58.15%), Query Frame = 0
Query:   77 QIRSDQQHTEDYFRFIEGKEEPDKCDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSI-SPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDL---HVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDV 397
            Q+ S+ Q  E+Y   + GKE+    D  SVI+G G++G+ L   G  G DD+++GR   IP V        L  FP+YVCVP  E+E+VI  CP+ K +DLVF+Q   +E +LK+Y L   + TQ LPYF++ S  G P +  V    +   GEPK+AG+T +CG W GA+ +RL + +    H   M Y  WR+ MLE+++FDS+F L+  ++      + GE+ Q+H EE  +M+ E++R++   +AV L+  VE R+   ++  +   R  ++    +YPFRNG   + S+     GFP P P H EYL+  +E+ ++ +D+
Sbjct:   46 QVWSNPQALEEYQDLLSGKEQVASVDTPSVIVGGGRVGEMLR--GAGGGDDVVVGRGGQIPEVHE-----GLESFPVYVCVPTSELENVIRSCPQSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGGRPQDSLVDLG-TDAYGEPKYAGETSICGKWAGALKQRLDRLNFCHRHSRTMFYRDWRRAMLEKVIFDSVFPLVGALNKGI---SIGEVGQSHTEECQEMITEIARSLPGTLAVTLMYGVEERLFAYSQHDNVEFRPCKI---EQYPFRNGFWYTFSQQAKQIGFPDPTPMHSEYLELAKEKGIIDFDL 356          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|553180286|ref|XP_005853380.1| (hypothetical protein NGA_0116202 [Nannochloropsis gaditana CCMP526] >gi|553191639|ref|XP_005855421.1| hypothetical protein NGA_0116201 [Nannochloropsis gaditana CCMP526] >gi|422293652|gb|EKU20952.1| hypothetical protein NGA_0116201 [Nannochloropsis gaditana CCMP526] >gi|422295685|gb|EKU22984.1| hypothetical protein NGA_0116202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 209.92 bits (533), Expect = 4.180e-63
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0
Query:    1 MKHKFRFSGSVSLPPSWLPVLGIFLSLRASAFQSVYLRKNIVSQQTSALHMYTTFYRSPCPHEDLPHSRKSLVRLWQIRSDQQHTEDYFRFIEGKEEPDK 100
            MKHKFRFSGSVSLPPSWLPVLGIFLSLRASAFQSVYLRKNIVSQQTSALHMYTTFYRSPCPHEDLPHSRKSLVRLWQIRSDQQHTEDYFRFIEGKEEPD 
Sbjct:   63 MKHKFRFSGSVSLPPSWLPVLGIFLSLRASAFQSVYLRKNIVSQQTSALHMYTTFYRSPCPHEDLPHSRKSLVRLWQIRSDQQHTEDYFRFIEGKEEPDN 162          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|299117349|emb|CBN75305.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 213.001 bits (541), Expect = 1.558e-62
Identity = 125/328 (38.11%), Postives = 176/328 (53.66%), Query Frame = 0
Query:   77 QIRSDQQHTEDYFRFIEGKEEPDKCDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNG-------CTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQ--DLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSY 395
            Q+ S+ Q  +DY   ++G    D  DQ SVIIG+GKLG AL   G MGED ++LGR + IP  L  S+G         L  FPIYVCVPE EV +VI  CP +K++DLVFM S CLE LLK  G+   + TQ   YFS+   G      +    +   GEPK AG+T VCG W+GA A RL++    LH     Y  WR+ M E+L+FD    L+  +H      T G + Q H EE+ DM++EL   + + +AV L+     R+  +A G    DR+      R + + N     +S +     F  P P H EYL++ +++ + ++
Sbjct:    2 QVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRGKLGTALASMG-MGED-VVLGRGEAIPDSLPCSSGKGEDGEPAMLQNFPIYVCVPEEEVAAVIDSCPDDKKDDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQSPFGLHCSTEYYLEWRRVMFEKLIFDCAVNLVGALHK---FPTVGYVVQYHAEELVDMLFELKNTLRSTLAVSLMNGYPERL--IAYGDQVGDRQTTRMDARTFKWYNEFFYDISNTALKAKFGDPCPMHTEYLNYGKDKGIFTF 322          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|585104990|gb|EWM23770.1| (hypothetical protein Naga_100411g4 [Nannochloropsis gaditana] >gi|585104991|gb|EWM23771.1| hypothetical protein Naga_100411g4 [Nannochloropsis gaditana] >gi|585104992|gb|EWM23772.1| hypothetical protein Naga_100411g4 [Nannochloropsis gaditana] >gi|585104993|gb|EWM23773.1| hypothetical protein Naga_100411g4 [Nannochloropsis gaditana])

HSP 1 Score: 197.978 bits (502), Expect = 1.690e-59
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 0
Query:  238 VCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKP 346
            +CGTWRGAVAERLRK+DLHVEVMD TYWR+ MLERLLF S+FGLLACVHA SGEKTY +LAQNHWE+IDDMV ELSRA+ANIMAVVLLT+VERRVRGLAEGP WRDRKP
Sbjct:    1 MCGTWRGAVAERLRKKDLHVEVMDCTYWRRQMLERLLFGSIFGLLACVHAGSGEKTYVQLAQNHWEKIDDMVRELSRAVANIMAVVLLTYVERRVRGLAEGPSWRDRKP 109          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|585100398|gb|EWM20623.1| (hypothetical protein Naga_101524g1 [Nannochloropsis gaditana])

HSP 1 Score: 186.037 bits (471), Expect = 1.234e-54
Identity = 85/91 (93.41%), Postives = 85/91 (93.41%), Query Frame = 0
Query:  123 MGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGL 213
            MGEDDLLLGRDDCIPTVLTVSNGC LNMFPI VCVPEWEVESVILGCPKEK NDLVFMQSACLETLLKRYG ANKKTTQCLP FSISPFG 
Sbjct:    1 MGEDDLLLGRDDCIPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGF 91          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|553180048|ref|XP_005853322.1| (hypothetical protein NGA_0718300 [Nannochloropsis gaditana CCMP526] >gi|422295724|gb|EKU23023.1| hypothetical protein NGA_0718300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 181.8 bits (460), Expect = 5.430e-53
Identity = 83/91 (91.21%), Postives = 84/91 (92.31%), Query Frame = 0
Query:  123 MGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGL 213
            MG DDLLLGRDDC+PTVLTVSNGC LNMFPI VCVPEWEVESVILGCPKEK NDLVFMQSACLETLLKRYG ANKKTTQCLP FSISPFG 
Sbjct:    1 MGVDDLLLGRDDCLPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGF 91          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|546324542|ref|XP_005718399.1| (unnamed protein product [Chondrus crispus] >gi|507115003|emb|CDF38506.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 140.198 bits (352), Expect = 1.371e-34
Identity = 98/307 (31.92%), Postives = 158/307 (51.47%), Query Frame = 0
Query:   77 QIRSDQQHTEDYFRFIEGKEEPD-KCDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGL-PVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTC-REYPFRNGMLRSLSRSFTSRGFPSPMPTH 380
            Q  SD   T++YF F+    + +   D  S I+G G++G  L + G     DL++ R   IP              P+Y+C    ++E +I  CP+ K++DLVF+Q+  LE +L+R+ ++  + T+   YF+IS     P++G     +++T+ E    G T VCG W GA  ER+ K  L  +++    +R+  LE+L++ S+F L+  VH   G    GE+AQ H  E+ ++  EL+  I   + V +L  +E+R+  LA G     R  + PT  +E+ +RNG     S      GFP P P H
Sbjct:   40 QTWSDPAVTQEYFDFLNNVNQRELMTDCTSTIVGSGRIGNFLREHGT--GQDLVIRRGQKIPEDAPG---------PVYLCTRNDDLEEIIENCPESKKDDLVFIQNGMLERMLRRHDMS--ENTRANLYFAISKMDADPIDG-----ITETNPE----GLTAVCGKWEGAFQERILKAGLTCKILKERDFRRSQLEKLIWISVFNLIGAVH---GNIPMGEVAQMHEREVTELSIELAHMIRFTLTVGMLPDIEKRM--LAYG----RRVKEFPTALKEFEWRNGFFYKYSMLARKNGFPDPTPMH 315          
BLAST of EWM26454.1 vs. NCBI_GenBank
Match: gi|612396467|ref|XP_007513753.1| (predicted protein [Bathycoccus prasinos] >gi|412991433|emb|CCO16278.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 134.035 bits (336), Expect = 2.239e-32
Identity = 93/286 (32.52%), Postives = 141/286 (49.30%), Query Frame = 0
Query:  105 SVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFG-LPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTC-REYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVR 388
            ++IIG G++GQAL   G   E D+++ RDD  P+  + S+G      PI+VC     +E+VI   P  +R DL+FMQ+  L++ L+  GL  +K TQ L YF+++ FG  P +G     V+  + E    G T V G W   VA R    DL   V D   +R  MLE+L++ S F L+   H  +   T G++A  H  E++ ++ EL + +A+I  V        R+   A      D     PT  +E+ +RNG   +LS     +    P P H   L  + 
Sbjct:   63 AIIIGGGRVGQALFDMGV--EGDVIVKRDDEFPS--SPSSG------PIFVCTRNDVLETVIEKTPANRREDLIFMQNGYLDSFLQSKGL--EKNTQALIYFAVAKFGEKPTDG-----VTSVNPE----GLTAVTGKWSDQVAARFHNGDLSCHVKDAAKYRASMLEKLIWISAFMLVGAQHPGA---TVGDVATTHKSEVEGLIKELVQGVADINDVTFEAGTLERLLAYA------DSVAHFPTAVKEFEWRNGFFYNLSTQTMQQSKDDPFPKHTAMLKAIN 318          
The following BLAST results are available for this feature:
BLAST of EWM26454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108501|gb|EWM26454.1|0.000e+0100.00hypothetical protein Naga_100144g13 [Nannochlorops... [more]
gi|553180283|ref|XP_005853379.1|2.917e-163100.00hypothetical protein NGA_0116102 [Nannochloropsis ... [more]
gi|551669787|ref|XP_005837652.1|4.094e-6537.23hypothetical protein GUITHDRAFT_151218 [Guillardia... [more]
gi|553180286|ref|XP_005853380.1|4.180e-6399.00hypothetical protein NGA_0116202 [Nannochloropsis ... [more]
gi|299117349|emb|CBN75305.1|1.558e-6238.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|585104990|gb|EWM23770.1|1.690e-5986.24hypothetical protein Naga_100411g4 [Nannochloropsi... [more]
gi|585100398|gb|EWM20623.1|1.234e-5493.41hypothetical protein Naga_101524g1 [Nannochloropsi... [more]
gi|553180048|ref|XP_005853322.1|5.430e-5391.21hypothetical protein NGA_0718300 [Nannochloropsis ... [more]
gi|546324542|ref|XP_005718399.1|1.371e-3431.92unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|612396467|ref|XP_007513753.1|2.239e-3232.52predicted protein [Bathycoccus prasinos] >gi|41299... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4226rna4226Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications