|
|
Properties
| Property Name | Value |
|---|
| Product | 26s protease regulatory subunit 6a-a |
| Orig transcript id | gnl|cribi|Naga_100003g61.1775.mrna |
| Orig protein id | gnl|cribi|Naga_100003g61.1775 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1045584..1047684 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna421 ID=rna421|Name=rna421|organism=Nannochloropsis gaditana|type=mRNA|length=1828bp
ACAGGTACGATGTTGCGCTCCTTAGCTGGTAAAGCTGTGTGCGGCCCCAT
CCGCTATCAACTATCTGCGGCCTTTGCCTCGCAGGCCGCCCCTCCTTTCC
ACTACCAAGAGCTCTTCGACCTCTCCCCAGACACAGCCACATCATACCGG
AAGCTTACTAGCGATTTTGTATCCACGTTTCATGTAAATGGACAAATATT
TTTGAAAGTCGAGCCTGAAGGGTTGCGTTTGCTAGCATCTCAAGCAATGG
TGGATATAGCTCACCTACTCCGACCGGCCCACTTAGCTCAATTGTCAAAG
ATTCTCAAAGATCCGGAGGCATCTTCAAACGACCGATTCGTAGCGTTAGA
GCTACTCAAAAATGCGAATATTGCGTCAGGTCTCATATTGCCTGGATGTC
AGGATACGGGCACGGGGATTGTTATCGGCAAGCGCGGCATGCAGGTTCTG
ACCGACGGAGAGGACGAAGCCCACCTGAGCCGGGGAGTCTATGACACGTA
TACGAGGACCAATCTTCGCTACTCACAGGTAGCACCCCTGGACATGTTTC
AGGAAAAAAACACGAAAACGAATCTGCCGGCACAAATAGACTTGTACGCC
ACCAAGGGAGACGCCTACAATTTCCTCTTTCTTGCCAAGGGTGGGGGCTC
GGCGAACAAAACTTTCTTGTACCAGCAGACAAAGGCGCTACTTAACCCCA
ACGGACTAATGAAGTTCATGGACGAAAAAATTAAAACTCTTGGCACGGCA
GCATGCCCTCCGTACCACTTGGCAGTAGTTATCGGTGGCCTGTCTGCTGA
ACTGAATCTGAAAACGGTGAAGCTTGCCTCTACCAAGTATTTGGATTTTT
TGCCAACGACTGGGAATGAGCACGGTCGCGCATTCCGAGACCTGGAATGG
GAAGAGAAGATCCATCAGCTCACTCAACGTATGGGCATTGGTGCACAATT
TGGTGGAAAGTATTTCTGCCACGATGTCCGCGTGATCCGATTGCCCCGAC
ATGGGGCCTCTTGTCCTGTAGGGATCGGGGTTTCCTGCTCTGCCGACCGG
CAGGCTAAAGGAAAAATCACAAAGGAGGGAGTTTTCCTCGAAGAACTGGA
GAGGGATGTCGGGAAGTACCTCCCAGATGTAGACGAGGCGACCTTAGAGG
GGGCGGAAGTGGTAAAGGTAGATCTTAACAGGCCAATGGCCGAGATCCGT
GCAACTCTGAGTAAATACCCCATCAAGACGAGACTAGCTTTGACGGGAAC
ACTGGTCGTGGCGCGAGATATCGCACACGCCAAATTGCTGGAGAGGGTGG
AGAGCGGACAGGGCCTGCCCGAATACGTCAAGGACCACATCATTTACTAC
GCCGGGCCAGCCAAGACGCCGGAGGGCTACGCGTCGGGATCTTTTGGACC
GACCACGGCGGGGAGGATGGACTCGTATGTGGACACATTCATGGCGAACG
GGGGCTCCTTCATCACCCTGGCGAAAGGGAATCGAAGCAAGACAGTGACC
AAGGCGTGTAAGACTCACGGAGGATTCTACTTAGGATCCATCGGCGGCCC
CGCGGCCATTCTGGCGCAGAACAACATCAAAAAAGTGGAAGTGCTGGAAT
ACCCTGAGCTGGGCATGGAAGCGATCTGGAAGATCCAGGTGGTGGACTTT
CCGGCTTTTGTGGTGTGCGACGACAAGGGGAACGACTTCTTCGCCAAGTG
GCAAGTGTGAGAAGAGGAGGCGCAGGCGAGGAAAATTTGACGTGTGCACT
TGATTGCATGAGGCTCCTACAGCTTAGTATGCCATGCCTCGGGATATTTG
AAGAAACCAGAATCCGAGCCAAGTGATG back to topprotein sequence of rna421 >rna421-protein ID=rna421-protein|Name=rna421|organism=Nannochloropsis gaditana|type=polypeptide|length=441bp
MDVTSNEAIAAADAAATAAEEALDAEIMQMSSEEIRQRIRLLDNEIRIMK
SDITSIDADSEGQRKRIKENLDKIKLNKQLPYLVGNVVEVLDMEEEEEEE
EDGAAADIDSQRKGVSAVIKTSTRQTIFLPIPGLVDVKELKPGDLVGTNK
DSYLILEKLPAEYDSRVKAMEVDTKPSEEWGDIGGCDKQIQELMEAVVLP
MTRKDLFLKIGVKPPKGVLLYGPPGTGKTMLARACANKTKAVFLKLAGPQ
LVQMFIGDGAKMVRDAFELAKEKCAEDGQGGAIIFIDELDAIGTKRFGGE
QSGDREVQRTMLELLNQLDGFTVNENIKVIAATNRPDVLDPALLRSGRLD
RKIELPHPTEEARARIMEIHSRKMNVDKEDVNFDELARCCDDFNGAQLKA
VCVEAGMLALRREAVEIKHEDFMEAISVVQAKKKGSLAMYA back to topmRNA from alignment at CM002455.1:1045584..1047684- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna421 ID=rna421|Name=rna421|organism=Nannochloropsis gaditana|type=mRNA|length=2101bp|location=Sequence derived from alignment at CM002455.1:1045584..1047684- (Nannochloropsis gaditana)
CCTGTGTTCAAGCCGCCTGAGAGCAAACATTTTCGACAGACACTTTTGTC
GCGTGGCGGGCTATCAGGTCACTCAACTCGCGGACCAAGCCATCTGAGCA
CGCACCCGTCACCATCCTATCACCCCCCTGATGTGCTTATCCCATCACAC
GTGATGAACAGAGCATCCAGCAGCATCATTACGGATAGCCATGGATGTAA
CCTCGAATGAGGCAATAGCAGCAGCAGATGCTGCAGCGACGGCAGCGGAA
GAAGCGCTTGATGCCGAGATAATGCAGGTAAGCGTCCGAGCATGGGATGC
TGGCACGTATAAGCCTGTGGGAAGTCTTGGAAGCATTGTGGGGCTAATTT
ATCCCGGAGACCTTCCCATGTCTCTGCTAACGCGATATTGGGTGCAGTTG
GGGAGAAGAGTCAGCAATATGTACTTAGAGTGTTACCCGCAGATATGTAT
CGGAGTAATGGTGGGGTCTCCTTTCTCCTTTCCACATTATTCTTAAACGC
GCCTTGACCCCTTTTGTTCCCTGTGACATTTTCCTCTTGGATTCACGCAG
ATGTCCTCTGAGGAAATTCGCCAGCGAATCCGCTTGCTTGACAACGAGAT
CCGCATCATGAAGTCCGACATCACAAGTATCGACGCCGATTCAGAGGGCC
AACGTAAGCGTATAAAGGAGAATTTGGACAAAATTAAGCTAAACAAACAG
CTTCCGTACCTGGTAGGGAACGTGGTGGAGGTCCTCGACATGGAAGAGGA
AGAGGAGGAGGAGGAGGACGGGGCGGCTGCGGACATCGACTCCCAGCGGA
AGGGCGTCTCGGCGGTAATCAAGACGTCGACGCGGCAGACGATCTTTCTA
CCGATCCCTGGTTTGGTGGACGTCAAGGAACTCAAGCCGGGGGACTTAGT
CGGGACCAACAAGGACAGCTACTTGATCCTGGAGAAGCTCCCGGCCGAGT
ACGACTCGCGCGTGAAGGCCATGGAGGTAGACACGAAGCCCTCCGAGGAG
TGGGGGGACATTGGCGGCTGCGACAAGCAGATCCAGGAGCTCATGGAGGC
AGTGGTGCTGCCCATGACGCGTAAGGATTTGTTTCTTAAGATTGGGGTCA
AGCCTCCCAAGGGCGTGCTGCTTTACGGGTGAGTAGTAGACATGGGCCGG
ACCGGGTTGCTCCCTGGGCCTCTGCACGTGCTGGTCCAGTGCCCCTTTCC
GCTGACCGCGGCCCCCACGTTTCTCTTACCAGGCCCCCCGGCACGGGCAA
GACCATGCTTGCGCGCGCGTGCGCCAACAAGACCAAGGCGGTGTTTCTGA
AGCTGGCTGGGCCGCAGCTTGTGCAGATGTTCATCGGGGACGGGGCAAAA
ATGGTGCGGGACGCGTTCGAGCTGGCGAAAGAGAAGTGCGCGGAAGACGG
GCAGGGGGGTGCGATCATCTTCATCGACGAGCTGGACGCGATTGGCACGA
AACGCTTTGGGGGGGAGCAGTCAGGGGACAGAGAGGTGCAGCGCACCATG
CTGGAACTCCTCAACCAGTTGGATGGCTTCACGGTAAACGAGAACATCAA
AGTCATCGCGGCCACGAACAGACCGGATGTGTTGGACCCCGCCTTGCTGC
GTTCGGGGCGCTTGGATCGAAAGATCGAGCTCCCGCACCCCACAGAAGAG
GCGCGAGCCCGAATCATGGAGATCCACTCCCGGAAAATGAATGTTGACAA
GGAGGATGTGAACTTCGATGAGTTGGCACGGTGCTGCGACGATTTCAACG
GGGCGCAGTTGAAGGCGGTGTGTGTGGAGGCGGGCATGCTGGCCCTGCGG
CGAGAGGCGGTGGAGATCAAGCACGAGGACTTCATGGAGGCCATCAGCGT
GGTGCAGGCCAAGAAGAAGGGGAGTTTGGCCATGTATGCCTAGATGATGA
GGAGGGGGAACGAGCGCGAGTGTGGCGTAGGGTGTAGAGGGGGATCGATT
GGGGGCCAGGGGCGGGAGGCTGAGCGGGAGCGACTAAGGTCGGACCCGCA
GGAAAAGAATGTTGTCGAGCCGTTTCAGAACAAAACATAAGTTGAAAGAA
AAAACAGCCAGAGAACCCTAAATACCGCGGTCATCACTTGGCTCGGATTC
T back to topCoding sequence (CDS) from alignment at CM002455.1:1045584..1047684- >rna421 ID=rna421|Name=rna421|organism=Nannochloropsis gaditana|type=CDS|length=3978bp|location=Sequence derived from alignment at CM002455.1:1045584..1047684- (Nannochloropsis gaditana)
GCCCCCCGGCACGGGCAAGACCATGCTTGCGCGCGCGTGCGCCAACAAGA
CCAAGGCGGTGTTTCTGAAGCTGGCTGGGCCGCAGCTTGTGCAGATGTTC
ATCGGGGACGGGGCAAAAATGGTGCGGGACGCGTTCGAGCTGGCGAAAGA
GAAGTGCGCGGAAGACGGGCAGGGGGGTGCGATCATCTTCATCGACGAGC
TGGACGCGATTGGCACGAAACGCTTTGGGGGGGAGCAGTCAGGGGACAGA
GAGGTGCAGCGCACCATGCTGGAACTCCTCAACCAGTTGGATGGCTTCAC
GGTAAACGAGAACATCAAAGTCATCGCGGCCACGAACAGACCGGATGTGT
TGGACCCCGCCTTGCTGCGTTCGGGGCGCTTGGATCGAAAGATCGAGCTC
CCGCACCCCACAGAAGAGGCGCGAGCCCGAATCATGGAGATCCACTCCCG
GAAAATGAATGTTGACAAGGAGGATGTGAACTTCGATGAGTTGGCACGGT
GCTGCGACGATTTCAACGGGGCGCAGTTGAAGGCGGTGTGTGTGGAGGCG
GGCATGCTGGCCCTGCGGCGAGAGGCGGTGGAGATCAAGCACGAGGACTT
CATGGAGGCCATCAGCGTGGTGCAGGCCAAGAAGAAGGGGAGTTTGGCCA
TGTATGCCTAGATGTCCTCTGAGGAAATTCGCCAGCGAATCCGCTTGCTT
GACAACGAGATCCGCATCATGAAGTCCGACATCACAAGTATCGACGCCGA
TTCAGAGGGCCAACGTAAGCGTATAAAGGAGAATTTGGACAAAATTAAGC
TAAACAAACAGCTTCCGTACCTGGTAGGGAACGTGGTGGAGGTCCTCGAC
ATGGAAGAGGAAGAGGAGGAGGAGGAGGACGGGGCGGCTGCGGACATCGA
CTCCCAGCGGAAGGGCGTCTCGGCGGTAATCAAGACGTCGACGCGGCAGA
CGATCTTTCTACCGATCCCTGGTTTGGTGGACGTCAAGGAACTCAAGCCG
GGGGACTTAGTCGGGACCAACAAGGACAGCTACTTGATCCTGGAGAAGCT
CCCGGCCGAGTACGACTCGCGCGTGAAGGCCATGGAGGTAGACACGAAGC
CCTCCGAGGAGTGGGGGGACATTGGCGGCTGCGACAAGCAGATCCAGGAG
CTCATGGAGGCAGTGGTGCTGCCCATGACGCGTAAGGATTTGTTTCTTAA
GATTGGGGTCAAGCCTCCCAAGGGCGTGCTGCTTTACGGATGGATGTAAC
CTCGAATGAGGCAATAGCAGCAGCAGATGCTGCAGCGACGGCAGCGGAAG
AAGCGCTTGATGCCGAGATAATGCAGGCCCCCCGGCACGGGCAAGACCAT
GCTTGCGCGCGCGTGCGCCAACAAGACCAAGGCGGTGTTTCTGAAGCTGG
CTGGGCCGCAGCTTGTGCAGATGTTCATCGGGGACGGGGCAAAAATGGTG
CGGGACGCGTTCGAGCTGGCGAAAGAGAAGTGCGCGGAAGACGGGCAGGG
GGGTGCGATCATCTTCATCGACGAGCTGGACGCGATTGGCACGAAACGCT
TTGGGGGGGAGCAGTCAGGGGACAGAGAGGTGCAGCGCACCATGCTGGAA
CTCCTCAACCAGTTGGATGGCTTCACGGTAAACGAGAACATCAAAGTCAT
CGCGGCCACGAACAGACCGGATGTGTTGGACCCCGCCTTGCTGCGTTCGG
GGCGCTTGGATCGAAAGATCGAGCTCCCGCACCCCACAGAAGAGGCGCGA
GCCCGAATCATGGAGATCCACTCCCGGAAAATGAATGTTGACAAGGAGGA
TGTGAACTTCGATGAGTTGGCACGGTGCTGCGACGATTTCAACGGGGCGC
AGTTGAAGGCGGTGTGTGTGGAGGCGGGCATGCTGGCCCTGCGGCGAGAG
GCGGTGGAGATCAAGCACGAGGACTTCATGGAGGCCATCAGCGTGGTGCA
GGCCAAGAAGAAGGGGAGTTTGGCCATGTATGCCTAGATGTCCTCTGAGG
AAATTCGCCAGCGAATCCGCTTGCTTGACAACGAGATCCGCATCATGAAG
TCCGACATCACAAGTATCGACGCCGATTCAGAGGGCCAACGTAAGCGTAT
AAAGGAGAATTTGGACAAAATTAAGCTAAACAAACAGCTTCCGTACCTGG
TAGGGAACGTGGTGGAGGTCCTCGACATGGAAGAGGAAGAGGAGGAGGAG
GAGGACGGGGCGGCTGCGGACATCGACTCCCAGCGGAAGGGCGTCTCGGC
GGTAATCAAGACGTCGACGCGGCAGACGATCTTTCTACCGATCCCTGGTT
TGGTGGACGTCAAGGAACTCAAGCCGGGGGACTTAGTCGGGACCAACAAG
GACAGCTACTTGATCCTGGAGAAGCTCCCGGCCGAGTACGACTCGCGCGT
GAAGGCCATGGAGGTAGACACGAAGCCCTCCGAGGAGTGGGGGGACATTG
GCGGCTGCGACAAGCAGATCCAGGAGCTCATGGAGGCAGTGGTGCTGCCC
ATGACGCGTAAGGATTTGTTTCTTAAGATTGGGGTCAAGCCTCCCAAGGG
CGTGCTGCTTTACGGATGGATGTAACCTCGAATGAGGCAATAGCAGCAGC
AGATGCTGCAGCGACGGCAGCGGAAGAAGCGCTTGATGCCGAGATAATGC
AGGCCCCCCGGCACGGGCAAGACCATGCTTGCGCGCGCGTGCGCCAACAA
GACCAAGGCGGTGTTTCTGAAGCTGGCTGGGCCGCAGCTTGTGCAGATGT
TCATCGGGGACGGGGCAAAAATGGTGCGGGACGCGTTCGAGCTGGCGAAA
GAGAAGTGCGCGGAAGACGGGCAGGGGGGTGCGATCATCTTCATCGACGA
GCTGGACGCGATTGGCACGAAACGCTTTGGGGGGGAGCAGTCAGGGGACA
GAGAGGTGCAGCGCACCATGCTGGAACTCCTCAACCAGTTGGATGGCTTC
ACGGTAAACGAGAACATCAAAGTCATCGCGGCCACGAACAGACCGGATGT
GTTGGACCCCGCCTTGCTGCGTTCGGGGCGCTTGGATCGAAAGATCGAGC
TCCCGCACCCCACAGAAGAGGCGCGAGCCCGAATCATGGAGATCCACTCC
CGGAAAATGAATGTTGACAAGGAGGATGTGAACTTCGATGAGTTGGCACG
GTGCTGCGACGATTTCAACGGGGCGCAGTTGAAGGCGGTGTGTGTGGAGG
CGGGCATGCTGGCCCTGCGGCGAGAGGCGGTGGAGATCAAGCACGAGGAC
TTCATGGAGGCCATCAGCGTGGTGCAGGCCAAGAAGAAGGGGAGTTTGGC
CATGTATGCCTAGATGTCCTCTGAGGAAATTCGCCAGCGAATCCGCTTGC
TTGACAACGAGATCCGCATCATGAAGTCCGACATCACAAGTATCGACGCC
GATTCAGAGGGCCAACGTAAGCGTATAAAGGAGAATTTGGACAAAATTAA
GCTAAACAAACAGCTTCCGTACCTGGTAGGGAACGTGGTGGAGGTCCTCG
ACATGGAAGAGGAAGAGGAGGAGGAGGAGGACGGGGCGGCTGCGGACATC
GACTCCCAGCGGAAGGGCGTCTCGGCGGTAATCAAGACGTCGACGCGGCA
GACGATCTTTCTACCGATCCCTGGTTTGGTGGACGTCAAGGAACTCAAGC
CGGGGGACTTAGTCGGGACCAACAAGGACAGCTACTTGATCCTGGAGAAG
CTCCCGGCCGAGTACGACTCGCGCGTGAAGGCCATGGAGGTAGACACGAA
GCCCTCCGAGGAGTGGGGGGACATTGGCGGCTGCGACAAGCAGATCCAGG
AGCTCATGGAGGCAGTGGTGCTGCCCATGACGCGTAAGGATTTGTTTCTT
AAGATTGGGGTCAAGCCTCCCAAGGGCGTGCTGCTTTACGGATGGATGTA
ACCTCGAATGAGGCAATAGCAGCAGCAGATGCTGCAGCGACGGCAGCGGA
AGAAGCGCTTGATGCCGAGATAATGCAG back to top
|