rna4209, rna4209 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4209
Unique Name	rna4209
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2032
Alignment location	CM002462.1:1141749..1144185 +

Link to JBrowse

Properties


Property Name	Value
Product	RNA-processing protein, HAT helix
Orig transcript id	gnl\|cribi\|Naga_100045g10.1675.mrna
Orig protein id	gnl\|cribi\|Naga_100045g10.1675
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1141749..1144185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100045g10	gene4053	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4209	rna4209-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26483.1	cds4199	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1141749..1144185+
coding sequence from alignment at CM002462.1:1141749..1144185+

mRNA sequence

>rna4209 ID=rna4209|Name=rna4209|organism=Nannochloropsis gaditana|type=mRNA|length=2032bp
ATGCGCTCTTTTTTGGGACGCTTTTCTAATATCTTTCCGCACCCTATCCG
ACTCCACCATCCCACAGCGTCTGACACCCACCTGGAACCACCAAGCAAAG
CGACCGGGGTTCCCTGGTTGATGCCACCTCCTCCTTTTCTTCGACCTCCT
ACCTTTTTACCGGCGCTGTCTCATTCCACAAAACGGGGGGTTTCCCTTCG
ATTCTTGCCTCTCGCTATTACAGCCTTTACGACGTTTTTTGGTTCTATGT
CGTGTAAAAGCGGTAGCAGCGGACGTGGCGCTGCATTATCTGATGGGCGG
GGCCAAGGTGTCGCGGCCGCTAGCATTCATAACGCAGCCAGTTATTCTCA
GTCGGATGCCGGTGGAAGCTCCTCTCCTATCGCGCCCGGTAGAGCTTTGT
GCCTCAATCACTCTGCCGGATCTGACATAGGCACTATCAAGCGTTTGATT
CCCGCGCTTACGCACACAGCTCGGAAAGGACAGATGGGGAGGGTTGGGCT
TCTAGGCGGCTCCGCAGACTTTACGGGGGCCCCCTTTTACGCAGGAATGG
CCGGCTTGAAAGTCGGGGGCGATCTCTGCTACATCTTCACGGCGGAAGAA
GCCTCGGGTCCTCTCAAGGCGTACAGTCCAGAGCTCATGGTCACGCCGGT
GTACTCGGCCAAGAGCTTAGGTGTGGGATTCGCAGGGGACCTGGAGGGCG
AGGAGGACGGGTCCTCGGACGCGGCACGCTCAGCCGAACACAAAGCGAAG
GAGAAGCAGGTGGCCCGGATGGTCCAGCGCGTCACCCCCTTTTTCCCCAA
GCTCCACGTGCTGGTGGTGGGGCCGGGGCTGGGACGGGACCCTTGGATCA
TGGAGGCGACGCGGCGCATCCTTGTGGAGGCCAAGACACACGCGCTCCCG
CTGGTGATCGACGCCGACGGGCTCTGGCTGGTGGCGCACTCCCCTGAGAT
CCTGCAAGACTACCCGGAAGGTGATGATGGAGGCGGCGTGGTGGTCACCC
CCAACCTGATCGAGTTCGCGCGCCTCCAGGCCGGACTGACAGGAGCCTCC
GTAGCAGAGGCGACTCCTCCTGCCGTCCCTTTCCAGCATACTGACGTGAT
TGCCGTGGCCAAGGCGTTGGGCGGAAAGGCAGGCAGAGTGACTGTATGTC
TGAAGGGGAGGGAGGACATCGTGGCTGATCGAGAGCGGTGGCTGGTGGTG
ACAGAGGAAGGGGCGCGGAGGCGGTCAGGTGGTTTGGGAGATATCTTAGC
GGGCACGACGGGGGTCCTGCTCCATTGGTCACACCTAGCCATGCAAGAAC
AGGCACATGGAGGAGCTGTGAAAGCAGAGAGGAGCGAGCGGGGAAGCGAG
GGAAAGGGGGCTCAATCAGGGGAAGAGAGCACGTGTCAAATCGACCCACG
GGACAGGGTCCTCTGGGCATGTGCCGGTGCTTCGCTTATTGCGCGGCGGG
CCAGTCGAAGGGCTTTTGAGGAACATCGTCGATCGATGACAGCGCCCGAC
GTCCTAGCACACCTGGGCCCGGTCCTCGAAGAACTCAGTCCAACTGACAT
CAAGGAGCCATGAAAGTCCATTTTGAAGACAAAAATAGAAGATAAAAATG
AGTATCACTAAAGAAAATGGAGCTTTTCAACGGCTATTTGCTCGGATTTA
AGGATTCTCACCACGGTCAACCCATTCACCATTTATGATTTCTTGCAAGT
AGCCTTCGACGATTGACTCATTCTCAAGCATAGCACATGAAGCATGCCCT
GTATTGTTCGACTTATTGAGGGATAAAACATAGATACTAAACCCTTTTTC
TTTTTGTGATTTTTTTATGGGGCACGCTGTTGGCGCGCCAACATAGGGAA
AACATGACATTTAGGTATATAAGCTCCACTTAAGAGCTTCGATTGAGTCG
GTGGTAATACTTAATGGAAGTTCTTAATGGGGAGAGCACAGATAATGCAA
CATGTGAATTTTAAAGTTTCGTAATCGCAGATAAGGTGTGACCTCATAGG
TTCATGCCTCAGCAATCTGATGACTTTCTTTA

protein sequence of rna4209

>rna4209-protein ID=rna4209-protein|Name=rna4209|organism=Nannochloropsis gaditana|type=polypeptide|length=744bp
MADAVYQALDRMLPALEDLQIRGLFTPEEVRAIASKRRDFEFLLRRRTAR
KNDFLRYITHELNLEELRHLRKHKAGLVKTSLSDHAGRGLIHFIFERALR
KFRGDLELWLQYLDYCESTGSHKAHSRALAQALQLFPRTAGLWIRAASYE
FFERASPPAARVLMQRGLRLNASDSALLWTQYFKLEVLYVMKLKGRRTAL
GLEGEEREGKGEEGEEKESVQLPLVEGEEGGVEGMKEVEPEEDLRDRSVR
AVLAGAVPRVVYLAAIEARPRDLDMRLSFLKALEEAETLEGGVAGAESGQ
TWGPLVEEVLQGVEEAFGAADAAWARARHVLAGVGGLREVDEMTRKRRKD
AGKEGARSSALGGSARKRGRRSSLSLPSGGESEAAEAWKESLRDGPRRCL
QALETGVGRVAGIKEGKEAEKMWHYYLRGLCEFLHAPVSVLRVAFPQAQA
ALSANQGTSLLAPAMYLRWAALWVPATVLSSQTEGEGQGEGYKEEGERTD
VGEARRILARGVEGHQDNARLWEARLRAEAWGQGGRVEEVFGMAQQALGP
TAGIDSREEEEVGGGERRRCAVAGCWYVYLEWLMQQGVTEREKEGEGGDT
DSSSDEEDEDEEEGGAAMEANSRKVENALEQALISTRGLGRVAICELWHR
YTGLTGLQRALSAMGEGGIEEQEAMAALCQRAMRGDCSGLTVAWFEAALA
FCGRVRAQQAAALWDEYEAFERAQGRHRAANNVRWRRAKAMGEE

mRNA from alignment at CM002462.1:1141749..1144185+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4209 ID=rna4209|Name=rna4209|organism=Nannochloropsis gaditana|type=mRNA|length=2437bp|location=Sequence derived from alignment at CM002462.1:1141749..1144185+ (Nannochloropsis gaditana)
ATGGCGGACGCAGTCTACCAAGCTCTGGACCGGATGCTTCCGGCTCTGGA
GGATTTGCAAATACGTGGGCTTTTCACACCGGTTCGTGTCAGAGATGGGT
GTATGCTCAGGTCCCACAACCTCCTGGTGCTTCGAGATCCTACTGTTTTG
TTTTTCATCTAGACTTTTCACGAGGCAGAAGTATTCTTGAAACTTTCGTT
CTCCTGTCTCATTGCCTTAAAGACTCGACGATTACTGATTATCGACTACT
TTCTTCATATCCACGTGTTTCGCTTatctgcaggaggaggtccgCGCAAT
AGCTAGCAAACGTAGGGACTTTGAGTTCCTTCTGCGTCGTCGCACGGCTC
GCAAAAATGATTTCCTCCGATATATCACACACGAGCTAAACCTGGAGGAG
CTTCGTCACCTCCGGAAACATAAGGCTGGTCTCGTCAAGACCTCGCTGAG
CGACCACGCAGGCAGGGGACTCATCCATTTTATTTTCGAACGAGCGCTGC
GCAAGTTTCGGGGTGACTTGGAGCTCTGGCTTCAATACCTGGACTACTGT
GAGTCCACCGGCTCCCATAAAGCCCACTCCCGcgccctcgcccaagccCT
GCAGCTCTTCCCTCGCACTGCCGGCCTCTGGATCCGCGCAGCTTCCTACG
AGTTCTTCGAGCGGGcatccccgcccgccgcgcgCGTGCTCATGCAGCGA
GGTCTACGCTTGAATGCCAGTGATTCGGCCTTGCTGTGGACGCAGTATTT
CAAATTGGAAGTCCTGTACGTGATGAAGCtgaagggacggaggacggcgt
tggggttggagggggaggaaagggaaggaaagggggaggagggggaggaa
aaagaaagtgtGCAGCTACCCCTtgtggaaggtgaggagggaggagtgga
gggaatgaaggaggTAGAGCCAGAAGAGGATCTCAGAGACCGAAGCGTGC
GGGCAGTCCTGGCGGGCGCAGTTCCGCGGGTGGTGTACTTGGCGGCGATC
GAGGCGAGGCCACGAGACCTGGACATGCGTCTCTCCTTTCTGAAGgcact
ggaggaggcggagacccTGGAGGGTGGAGTGGCAGGCGCGGAGAGCGGGC
AAACGTGGGGCccgttggtggaggaggtcctgcagggggtggaggaggcc
ttcGGAGCGGCGGATGCggcctgggcgagggcgaggcacGTACTGGCGGG
GGTCGGGGGCTTGAGAGAGGTAGACGAGatgacaaggaagaggagaaagg
acgccgggaaggagggagctcGGAGCTCTGCCTTGGGCGGCAGCGctagg
aagagggggcgccggtcctcgctctccttgccgtcggggggggaaTCAGA
GGCAGCCGAAGCCTGGAAAGAGAGCCTGAGGGACGGCCCTCGGAGGTGTT
TGCAGGCGCTGGAGACGGGTGTTGGGAGGGTCGCCGGTatcaaggagggc
aaggaggcggagaagatgTGGCACTACTACCTTCGAGGCCTCTGCGagtt
cctccacgcccccgtGTCtgtcctccgggtcgcttttcCCCAGGCCCAGG
CTGCATTGAGTGCGAATCAGGGGACAAGCCTCCTGGCTCCCGCCATGTAT
TTAAGGTGGGCGGCCTTGTGGGTGCCGGCGACGGTACTGTCGTCGCAGAC
AGAAGgtgaggggcagggggagggttacaaggaggagggggagaggacgg
acgTGGGCGAAGCACGACGTATACTGGCCAGGGGAGTGGAGGGTCACCAG
GACAATGCCCGTTTGTGGGAGGCGAGATTGCGGGCGGAAGCttgggggca
agggggaagggtggaggaggtgtttgGGATGGCGCAGCAGGCACTGGGAC
CGACGGCGGGGATCGAtagcagagaggaggaggaggttggcgggggggag
agacgaAGGTGTGCGGTCGCAGGCTGCTGGTATGTGTATTTGGAGTGGTT
GATGCAGCAAGGGGTGACAgaacgggagaaggagggtgagggaggggaca
ccgacagcagcagcgacgaggaggacgaggacgaggaggagggcggggca
gcaaTGGAAGCAAATTCACGCAAGGTAGAGAATGCCCTGGAGCAAGCCTT
GATCAGCACGCGAGGATTAGGACGCGTGGCAATTTGTGAGCTTTGGCATC
GATACACAGGCCTGACGGGGCTGCAGAGGGCGTTGTCTGCaatgggagag
ggagggatagaggagcaggaggctaTGGCAGCCTTATGCCAGCGCGCGAT
GCGTGGAGATTGTAGCGGACTCACAGTCGCGTGGTTTGAGGCAGCCCTGG
CGTTTTGCGGGCGAGTAAGAGCACAACAGGCAGCTGCGCTGTGGGATGAG
TACGAAGCATTTGAACGTGCTCAAGGTAGACATCGGGCAGCTAACAATGT
GAGGTGGCGTAGAGCAAAAGCAATGGGCGAAGAATAG

Coding sequence (CDS) from alignment at CM002462.1:1141749..1144185+

>rna4209 ID=rna4209|Name=rna4209|organism=Nannochloropsis gaditana|type=CDS|length=4470bp|location=Sequence derived from alignment at CM002462.1:1141749..1144185+ (Nannochloropsis gaditana)
ATGGCGGACGCAGTCTACCAAGCTCTGGACCGGATGCTTCCGGCTCTGGA
GGATTTGCAAATACGTGGGCTTTTCACACCGgaggaggtccgCGCAATAG
CTAGCAAACGTAGGGACTTTGAGTTCCTTCTGCGTCGTCGCACGGCTCGC
AAAAATGATTTCCTCCGATATATCACACACGAGCTAAACCTGGAGGAGCT
TCGTCACCTCCGGAAACATAAGGCTGGTCTCGTCAAGACCTCGCTGAGCG
ACCACGCAGGCAGGGGACTCATCCATTTTATTTTCGAACGAGCGCTGCGC
AAGTTTCGGGGTGACTTGGAGCTCTGGCTTCAATACCTGGACTACTGTGA
GTCCACCGGCTCCCATAAAGCCCACTCCCGcgccctcgcccaagccCTGC
AGCTCTTCCCTCGCACTGCCGGCCTCTGGATCCGCGCAGCTTCCTACGAG
TTCTTCGAGCGGGcatccccgcccgccgcgcgCGTGCTCATGCAGCGAGG
TCTACGCTTGAATGCCAGTGATTCGGCCTTGCTGTGGACGCAGTATTTCA
AATTGGAAGTCCTGTACGTGATGAAGCtgaagggacggaggacggcgttg
gggttggagggggaggaaagggaaggaaagggggaggagggggaggaaaa
agaaagtgtGCAGCTACCCCTtgtggaaggtgaggagggaggagtggagg
gaatgaaggaggTAGAGCCAGAAGAGGATCTCAGAGACCGAAGCGTGCGG
GCAGTCCTGGCGGGCGCAGTTCCGCGGGTGGTGTACTTGGCGGCGATCGA
GGCGAGGCCACGAGACCTGGACATGCGTCTCTCCTTTCTGAAGgcactgg
aggaggcggagacccTGGAGGGTGGAGTGGCAGGCGCGGAGAGCGGGCAA
ACGTGGGGCccgttggtggaggaggtcctgcagggggtggaggaggcctt
cGGAGCGGCGGATGCggcctgggcgagggcgaggcacGTACTGGCGGGGG
TCGGGGGCTTGAGAGAGGTAGACGAGatgacaaggaagaggagaaaggac
gccgggaaggagggagctcGGAGCTCTGCCTTGGGCGGCAGCGctaggaa
gagggggcgccggtcctcgctctccttgccgtcggggggggaaTCAGAGG
CAGCCGAAGCCTGGAAAGAGAGCCTGAGGGACGGCCCTCGGAGGTGTTTG
CAGGCGCTGGAGACGGGTGTTGGGAGGGTCGCCGGTatcaaggagggcaa
ggaggcggagaagatgTGGCACTACTACCTTCGAGGCCTCTGCGagttcc
tccacgcccccgtGTCtgtcctccgggtcgcttttcCCCAGGCCCAGGCT
GCATTGAGTGCGAATCAGGGGACAAGCCTCCTGGCTCCCGCCATGTATTT
AAGGTGGGCGGCCTTGTGGGTGCCGGCGACGGTACTGTCGTCGCAGACAG
AAGgtgaggggcagggggagggttacaaggaggagggggagaggacggac
gTGGGCGAAGCACGACGTATACTGGCCAGGGGAGTGGAGGGTCACCAGGA
CAATGCCCGTTTGTGGGAGGCGAGATTGCGGGCGGAAGCttgggggcaag
ggggaagggtggaggaggtgtttgGGATGGCGCAGCAGGCACTGGGACCG
ACGGCGGGGATCGAtagcagagaggaggaggaggttggcgggggggagag
acgaAGGTGTGCGGTCGCAGGCTGCTGGTATGTGTATTTGGAGTGGTTGA
TGCAGCAAGGGGTGACAgaacgggagaaggagggtgagggaggggacacc
gacagcagcagcgacgaggaggacgaggacgaggaggagggcggggcagc
aaTGGAAGCAAATTCACGCAAGGTAGAGAATGCCCTGGAGCAAGCCTTGA
TCAGCACGCGAGGATTAGGACGCGTGGCAATTTGTGAGCTTTGGCATCGA
TACACAGGCCTGACGGGGCTGCAGAGGGCGTTGTCTGCaatgggagaggg
agggatagaggagcaggaggctaTGGCAGCCTTATGCCAGCGCGCGATGC
GTGGAGATTGTAGCGGACTCACAGTCGCGTGGTTTGAGGCAGCCCTGGCG
TTTTGCGGGCGAGTAAGAGCACAACAGGCAGCTGCGCTGTGGGATGAGTA
CGAAGCATTTGAACGTGCTCAAGGTAGACATCGGGCAGCTAACAATGTGA
GGTGGCGTAGAGCAAAAGCAATGGGCGAAGAATAGATGGCGGACGCAGTC
TACCAAGCTCTGGACCGGATGCTTCCGGCTCTGGAGGATTTGCAAATACG
TGGGCTTTTCACACCGgaggaggtccgCGCAATAGCTAGCAAACGTAGGG
ACTTTGAGTTCCTTCTGCGTCGTCGCACGGCTCGCAAAAATGATTTCCTC
CGATATATCACACACGAGCTAAACCTGGAGGAGCTTCGTCACCTCCGGAA
ACATAAGGCTGGTCTCGTCAAGACCTCGCTGAGCGACCACGCAGGCAGGG
GACTCATCCATTTTATTTTCGAACGAGCGCTGCGCAAGTTTCGGGGTGAC
TTGGAGCTCTGGCTTCAATACCTGGACTACTGTGAGTCCACCGGCTCCCA
TAAAGCCCACTCCCGcgccctcgcccaagccCTGCAGCTCTTCCCTCGCA
CTGCCGGCCTCTGGATCCGCGCAGCTTCCTACGAGTTCTTCGAGCGGGca
tccccgcccgccgcgcgCGTGCTCATGCAGCGAGGTCTACGCTTGAATGC
CAGTGATTCGGCCTTGCTGTGGACGCAGTATTTCAAATTGGAAGTCCTGT
ACGTGATGAAGCtgaagggacggaggacggcgttggggttggagggggag
gaaagggaaggaaagggggaggagggggaggaaaaagaaagtgtGCAGCT
ACCCCTtgtggaaggtgaggagggaggagtggagggaatgaaggaggTAG
AGCCAGAAGAGGATCTCAGAGACCGAAGCGTGCGGGCAGTCCTGGCGGGC
GCAGTTCCGCGGGTGGTGTACTTGGCGGCGATCGAGGCGAGGCCACGAGA
CCTGGACATGCGTCTCTCCTTTCTGAAGgcactggaggaggcggagaccc
TGGAGGGTGGAGTGGCAGGCGCGGAGAGCGGGCAAACGTGGGGCccgttg
gtggaggaggtcctgcagggggtggaggaggccttcGGAGCGGCGGATGC
ggcctgggcgagggcgaggcacGTACTGGCGGGGGTCGGGGGCTTGAGAG
AGGTAGACGAGatgacaaggaagaggagaaaggacgccgggaaggaggga
gctcGGAGCTCTGCCTTGGGCGGCAGCGctaggaagagggggcgccggtc
ctcgctctccttgccgtcggggggggaaTCAGAGGCAGCCGAAGCCTGGA
AAGAGAGCCTGAGGGACGGCCCTCGGAGGTGTTTGCAGGCGCTGGAGACG
GGTGTTGGGAGGGTCGCCGGTatcaaggagggcaaggaggcggagaagat
gTGGCACTACTACCTTCGAGGCCTCTGCGagttcctccacgcccccgtGT
CtgtcctccgggtcgcttttcCCCAGGCCCAGGCTGCATTGAGTGCGAAT
CAGGGGACAAGCCTCCTGGCTCCCGCCATGTATTTAAGGTGGGCGGCCTT
GTGGGTGCCGGCGACGGTACTGTCGTCGCAGACAGAAGgtgaggggcagg
gggagggttacaaggaggagggggagaggacggacgTGGGCGAAGCACGA
CGTATACTGGCCAGGGGAGTGGAGGGTCACCAGGACAATGCCCGTTTGTG
GGAGGCGAGATTGCGGGCGGAAGCttgggggcaagggggaagggtggagg
aggtgtttgGGATGGCGCAGCAGGCACTGGGACCGACGGCGGGGATCGAt
agcagagaggaggaggaggttggcgggggggagagacgaAGGTGTGCGGT
CGCAGGCTGCTGGTATGTGTATTTGGAGTGGTTGATGCAGCAAGGGGTGA
CAgaacgggagaaggagggtgagggaggggacaccgacagcagcagcgac
gaggaggacgaggacgaggaggagggcggggcagcaaTGGAAGCAAATTC
ACGCAAGGTAGAGAATGCCCTGGAGCAAGCCTTGATCAGCACGCGAGGAT
TAGGACGCGTGGCAATTTGTGAGCTTTGGCATCGATACACAGGCCTGACG
GGGCTGCAGAGGGCGTTGTCTGCaatgggagagggagggatagaggagca
ggaggctaTGGCAGCCTTATGCCAGCGCGCGATGCGTGGAGATTGTAGCG
GACTCACAGTCGCGTGGTTTGAGGCAGCCCTGGCGTTTTGCGGGCGAGTA
AGAGCACAACAGGCAGCTGCGCTGTGGGATGAGTACGAAGCATTTGAACG
TGCTCAAGGTAGACATCGGGCAGCTAACAATGTGAGGTGGCGTAGAGCAA
AAGCAATGGGCGAAGAATAG

Synonyms

Publications