rna4199, rna4199 (mRNA) Nannochloropsis gaditana

Overview
Namerna4199
Unique Namerna4199
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3006
Alignment locationCM002462.1:1100166..1100635 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100045g22.1663.mrna
Orig protein idgnl|cribi|Naga_100045g22.1663
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1100166..1100635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100045g22gene4043Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4199rna4199-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26471.1cds4189Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4199 ID=rna4199|Name=rna4199|organism=Nannochloropsis gaditana|type=mRNA|length=3006bp
CCTTGAGATTTTTCAGCCCAAGGTAACGCCCAGTGATAATTGAGATGTGC
CTCTTCGCACGCAACGTGAAATGGCGATGCCTTGAAAAATGTTCATGCCC
GCGCTCCCTCTTGCTTGCATAGCAGTAGCACTTGGGAAATTGGAAAAGCT
GTAGATGGGTTGGCAGTTTTCTAATGTGCTTTGTCTGCCCCATTTTTTCC
AAAGGTGTAGCTTGAGATAGACTCAACTGTGACGTGCGAAGTCTAGTGCA
TGGCAACGCTGTACTGTCTCCTTGTTGCTTTTTCTCTCTTTCCATCAAGC
TTTGCTTCTGCCATTTTCTCTGAGCTATTTACTCACATGACTCCTTCTTA
TCACTAAAAGAGGCATGTCAGAAACAGGAAGCAACGTACAAGAAGACACA
GATGACCTGAGTCCTGGGAGACGGACAAGTGCAGAAGCGAGGCTAAAAAG
TGAACATTCGGATCCACACGTGTACGAGGATACTCAGGGCTCATCAGATT
CATTTCTGGATGCGGCGCCCACATCGCAGGGGACACCGACGTCATCTCAT
GAAAAAGAAGTAGCCGCAGAGCTCCGACAGGTCCTTTCAACGGGCTCTTT
CGCTGGTTTGTTGATGCAATTGGCGGGCAGCAGTGGTAGTAGCTGCGGCA
GCAGTAAAGGTAGTGCTGATAGCACGTCCAAGGTGTCGGCTTCCACTGAG
GTAGCTGTAGACGAAGGCAAGCGAGAAAAAAGGCGGCGGCAACTATCGCC
AGGGCTTGTCGACCAGCGCCACCTGGAGGGGCAAGCACACAGTATGGAGG
GGACGGAGAACCCACAAAAAATAGAAGCTCCGCCACCTCTGATCGCCTTC
GCCCCGCGTCCAAGAACTCTCGAGACCCCTGCTTTGGGAGTACGTATGGC
CGCGACGGACCATACAACGTCGTCCATGCAGCCCGTGGTATCGAGGGGCC
AAAGCGGGACGAGCGACAGTGCGGGCAGCCTGAATTTTGCGAACATGTCT
CCATTTTCCTCGATAGAATTTCCCATTGGACCTACGCTGTTGTCCTCTCC
TTCGTTTCCTTCCTCCTCCTCTGAGATGCCGGAGCCTGTCACATCATTAG
GATTGCTCGAAGGTCAAGCATCCATGTCCACGGATTGGCAAGAGGGAGTG
CCACTGGATTCGCCGTCTGAAATTTTCATGAGCCAAGGTGGTGACGGAGG
GAGCGGAATGGTGATGGGGGCACCCTCGACTTTCTCGGCGCCCGCACCTA
CTGCCGGAGACGCCGTTGACGAAAGACTGGTAGGACTCGCCTCACCTGCC
ACATCCACCGCCACCTCCACAACGTCTACCATGCACACCACCACGACCAT
GATGGACCTCCAGTCGGGACAGGCGGAAGGGTCTGGAGTAGGCTATCTAC
CTGTACTGAACGCCGACACGCATTTTCCCTTCTCTGCGTCGACCCCCGAC
GAGACCCTTTCCCTCCCCTCTCCCTCGGTGGCGGCGGCTTCCCTCGGACC
TCCTGCTGACAGGACAAGGGACTGGCAAGGAAGGAAAGGGTTGAGAAGCG
AAACGAAGACGGGATCGCCCCTCGGTGCAGAGCATCCTAGAGTGATTACT
ACTCCGACTCTTGCAACCCTTTCTTCCGGCGGGGCGCGTGGGCAGGGGCA
GCCTCGACAGATTCCTCCACCCCCGTTGCCGCTGCCGGCAGCCTCTCCCA
TGGCCACGGCTACGATGATGATGGGTCACCTAGGCTTTAACATCTACTAT
GCACCACCACCCGTCCCCTCCTCCCTACCCGCTGCCTCCAAGGCGTCAAA
ATCACCGGCCGGTGCTGCCAATAGGGCAGCCGCTGCGACTTTGACGAGCG
GAAGTCGGGGCTCACGAACCAGGAGACGGTCTGCGAGCCTGTCGACCTCG
TCTACACCATCAGCGCTTCCCGTCGCAGCCATTCCCAGGGCAGCTGCCGC
CACAAGACCCACAATAGACACTGCTGCTGAGGTAGCAGAGTCAAGTACAG
GACTTCTTCGTGGAAGCTACAGGTGCGGGCGCTGTGGAGGGATGAAAAAG
AATCACGTATGCCCCTATCTGTACGAGGAGCATCTGGAGAGGCGGGACGC
CGGCACAGAGGTGGACTTGGTGTTAACACGGGGAGACCAGGACAAAGGAG
GGCGTCCAAATATGCCCTCTGGCATGTCCTTTCATTTTCTGACGATTCGA
GCCCGTGAAAATGTGAAGGCGGGTTTTCAGACATTACTAGCATCGACACC
AGAGCTGGACATCAGGATGGAGACAGGCATTCCGTCGACTCATACTTCCT
CGTCTTCGGCGCCACTGCTGCCCCTGCCAGTACCCATGAGCGTTCATGGA
CAAGCCATGGCACATTCAGCTTTATATGATAACATGAATATGTCTCGGTC
GATACAGGAGCAAGAGCCTCAGGGACAGCGGCGCCAGCTGCAGCAGCAAC
AAGACGTGTACCCTTCACCAGATCAAGCCCCCGCCATCGACTCACAGGTT
CCAACAGATATGGAGGAGGATCAAGCAGTTACACTTGTGAGACAATGTTA
TTACGTGCGGGTCCATAGCGACTCGTACAAGGACGAAGGAGAAGGAGGAA
AAGCATGGTTGTATATGGAAAAAGAGTAGGATTATTGAAAACTGTGTGAC
TTACATTTGCGTCGGAAATATCTGGAATACCCTTCTGGAAACAGATGGGA
AGCGTACCTTTACGATGACAGTAATGAGTGAAAGGGACGGTTGGAAATGT
GTCATCTTTCTCTGACATAATCAAGGAGTGACGATAAATGTAATCTCTGT
GGAGATGCTGGATTGCTGGCTTGTAATAGTGTAGATTACATGCTTTCATG
TGTAATTTTGATGCGTAATGTAGACGCGCCGTATCGCTCTACATGTGTGC
TACATATCTTTTGCCCAAAGTACAAACATCTTTATTCTTTCATGTAGGAA
AGAAATGTGTAATTTAGATCATGTTTTTGGTCATAGAAGCAAAAAATATT
TTTGGA
back to top

protein sequence of rna4199

>rna4199-protein ID=rna4199-protein|Name=rna4199|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MVKTNNTKAPLEVARKNQNKLGCSDTCGPISGVWLTFHAISLNLLGAAHG
PMLCPPHLLGVTLRLCVCQLPLILVDIESKGSVGLLRLTFVSRETPWLAV
CAMTSMMYFWSNSIYSGKLEHNNTVI
back to top

mRNA from alignment at CM002462.1:1100166..1100635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4199 ID=rna4199|Name=rna4199|organism=Nannochloropsis gaditana|type=mRNA|length=470bp|location=Sequence derived from alignment at CM002462.1:1100166..1100635- (Nannochloropsis gaditana)
ATGGTCAAAACAAACAATACAAAGGCGCCGCTTGAAGTTGCAAGAAAAAA
TCAAAACAAGCTGGGGTGCAGCGATACATGCGGTCCCATCTCCGGAGTTT
GGTTAACTTTTCACGCGAGTACCGGAACTCAATCGAAATTACTCCTTTGA
CACGAATACACTAGTATCATTAAACTTGTTAGGTGCGGCTCATGGCCCAA
TGCTCTGTCCTCCCCACCTGCTCGGCGTGACTTTGCGACTCTGCGTTTGC
CAGTTGCCACTGATCCTTGTCGACATAGAAAGCAAGTGCGTGCAATATCG
TATAAGTTCTTAAAGCTCTTCACATCAGAGGATCGGTCGGCCTGTTGCGT
CTAACTTTCGTCTCCAGGGAGACGCCGTGGCTCGCCGTGTGTGCGATGAC
CTCAATGATGTATTTTTGGTCAAATTCAATCTATAGCGGGAAGTTGGAGC
ACAACAACACCGTAATTTAG
back to top

Coding sequence (CDS) from alignment at CM002462.1:1100166..1100635-

>rna4199 ID=rna4199|Name=rna4199|organism=Nannochloropsis gaditana|type=CDS|length=1143bp|location=Sequence derived from alignment at CM002462.1:1100166..1100635- (Nannochloropsis gaditana)
AGGATCGGTCGGCCTGTTGCGTCTAACTTTCGTCTCCAGGGAGACGCCGT
GGCTCGCCGTGTGTGCGATGACCTCAATGATGTATTTTTGGTCAAATTCA
ATCTATAGCGGGAAGTTGGAGCACAACAACACCGTAATTTAGTATCATTA
AACTTGTTAGGTGCGGCTCATGGCCCAATGCTCTGTCCTCCCCACCTGCT
CGGCGTGACTTTGCGACTCTGCGTTTGCCAGTTGCCACTGATCCTTGTCG
ACATAGAAAGCAAATGGTCAAAACAAACAATACAAAGGCGCCGCTTGAAG
TTGCAAGAAAAAATCAAAACAAGCTGGGGTGCAGCGATACATGCGGTCCC
ATCTCCGGAGTTTGGTTAACTTTTCACGCGAAGGATCGGTCGGCCTGTTG
CGTCTAACTTTCGTCTCCAGGGAGACGCCGTGGCTCGCCGTGTGTGCGAT
GACCTCAATGATGTATTTTTGGTCAAATTCAATCTATAGCGGGAAGTTGG
AGCACAACAACACCGTAATTTAGTATCATTAAACTTGTTAGGTGCGGCTC
ATGGCCCAATGCTCTGTCCTCCCCACCTGCTCGGCGTGACTTTGCGACTC
TGCGTTTGCCAGTTGCCACTGATCCTTGTCGACATAGAAAGCAAATGGTC
AAAACAAACAATACAAAGGCGCCGCTTGAAGTTGCAAGAAAAAATCAAAA
CAAGCTGGGGTGCAGCGATACATGCGGTCCCATCTCCGGAGTTTGGTTAA
CTTTTCACGCGAAGGATCGGTCGGCCTGTTGCGTCTAACTTTCGTCTCCA
GGGAGACGCCGTGGCTCGCCGTGTGTGCGATGACCTCAATGATGTATTTT
TGGTCAAATTCAATCTATAGCGGGAAGTTGGAGCACAACAACACCGTAAT
TTAGTATCATTAAACTTGTTAGGTGCGGCTCATGGCCCAATGCTCTGTCC
TCCCCACCTGCTCGGCGTGACTTTGCGACTCTGCGTTTGCCAGTTGCCAC
TGATCCTTGTCGACATAGAAAGCAAATGGTCAAAACAAACAATACAAAGG
CGCCGCTTGAAGTTGCAAGAAAAAATCAAAACAAGCTGGGGTGCAGCGAT
ACATGCGGTCCCATCTCCGGAGTTTGGTTAACTTTTCACGCGA
back to top
Synonyms
Publications