rna4193, rna4193 (mRNA) Nannochloropsis gaditana

Overview
Namerna4193
Unique Namerna4193
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length583
Alignment locationCM002462.1:1070562..1072037 -

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Properties
Property NameValue
Productddi1p
Orig transcript idgnl|cribi|Naga_100045g28.1681.mrna
Orig protein idgnl|cribi|Naga_100045g28.1681
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1070562..1072037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100045g28gene4037Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4193rna4193-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26489.1cds4183Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4193 ID=rna4193|Name=rna4193|organism=Nannochloropsis gaditana|type=mRNA|length=583bp
TCCTCCAGCTTGGGCCGCTTCCAAATCCAGACGCGCATCTCCATTATCGA
CTCCCTGTCCCCCCCCTTCGTGATCGGGCTCGACGTGCTCAGGCACTGTC
GGTGCGACGTCTCCTTCCAGAATCAAGCATTGATCCTTCGCTCGCCCGGG
GGGGCGGTGGAAAAAAGTCGGGAGGAAACGGTTCCTTTCTCCATAGGCGC
CGCGCCGTCGCCCGTCATTACGAAGGAAGGAGGCGGGGACGGCCAAGGCC
CGACGGAGGGAAGGGGGGAGAGACCGCCAAGGGAGGAGGAGGAGGAAGAC
CCCCTGGGCTCCCTACCGCCATCGAGGGGGGGGTCTCGATGGCGGGTGTG
TGAGGGAAAGCCCGACGATGTGGTCAGGAACTGTACGTAAGCCGGATCGA
TGACACACGGGTTCTGAAGGCGATGGAAGGGAGGGGGGAGGGATTATTCG
GCCCATTACCTGCGGATGTGACACTAGACCAACAAGACTGACAGGAAAGC
TAACGCCTTGAGCTTGTTCATGGCCCTTCCCTTATTTTTCATTCTTCGTC
TCTCTCACCTCCCCAGCCCCCCTCTCTCCTCCA
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protein sequence of rna4193

>rna4193-protein ID=rna4193-protein|Name=rna4193|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MVHESRSNSVARKRGLGMSPHRLTTSLIPLGVLPPALLLALLLSPTSTVD
ATLYWGRRGTGVHAPAPSTSIPPASPRSHPRGPTHHLASATAHFRLRPEE
EDEAKEGKETTREEGEGGSDCTYASFRAQIRREVEEESRLEEERELARAR
TSYAFHLAEERRRTGAGSESKEKGRRAGGEMGGVRAWARKRSGPEGRRSS
RKSVFMDRESRRALSYGRSGQAAAASVASEEGVLERQGRELPSFPPSSSA
PSPLDRSPGTEMVEGRVTEEGREEGREEGREVGNEAPANTTTAGAGAGAR
QSVIHLQVHKELHHQQEMLYVDCAINHRRLRACVDTGASTTVMSLAMARE
CGLLSHIDTSVVGGVKGVGFAKILGCVHEAKIR
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mRNA from alignment at CM002462.1:1070562..1072037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4193 ID=rna4193|Name=rna4193|organism=Nannochloropsis gaditana|type=mRNA|length=1476bp|location=Sequence derived from alignment at CM002462.1:1070562..1072037- (Nannochloropsis gaditana)
TCAGGGACTTGAAGGCGGGGGCATGTGCATATAAAGGGACAAGCACAGAG
CGACAGTATCACTTAGGTGTCTGATTGACACATCCGAACCCGACAGAATG
CAAGTCACACGTTCATTGGTTCTCATCTCTCCTTACAAATCCATACCAAA
CAGACTTCATTATGGTCCACGAATCAAGAAGTAATTCCGTAGCAAGGAAA
AGAGGCCTTGGTATGTCACCGCACCGGCTTACCACCTCCTTAATCCCCCT
CGGCGTCCTTCCTCCCGCCCTTCTCCTCGCTCTCCTCCTCAGCCCCACCT
CCACTGTCGATGCTACCCTGTACTGGGGAAGAAGGGGCACTGGGGTCCAT
GCTCCTGCCCCGAGTACCTCCATTCCACCGGCATCCCCCCGCTCCCACCC
CCGCGGTCCCACGCATCATCTCGCCAGCGCCACGGCGCATTTCCGCCTGC
GTCCTGAAGAGGAGGACGAGGCGAAGGAAGGGAAGGAGACTACGCGCGAA
GAAGGAGAGGGAGGGAGCGACTGCACCTACGCAAGTTTTCGGGCGCAAAT
CCGTAGGGAAGTGGAGGAAGAGAGCCGTTTAGAGGAAGAGCGGGAATTGG
CTCGTGCACGGACCTCTTACGCCTTCCACCTGGCGGAGGAGCGGCGACGG
ACGGGCGCAGGGTCGGAAAGCAAAGAAAAAGGACGGAGGGCGGGCGGGGA
GATGGGTGGGGTGCGAGCCTGGGCTCGGAAAAGGTCTGGCCCCGAGGGCC
GGAGGAGCAGCAGGAAGAGCGTCTTTATGGACCGAGAATCCCGCCGGGCT
CTCTCGTACGGTCGAAGCGGGCAGGCCGCCGCCGCTTCCGTCGCCAGTGA
AGAAGGTGTGCTCGAGCGCCAAGGGCGAGAATTGCCCTCTTTCCCGCCCT
CTTCCTCCGCCCCCTCCCCCCTCGACCGCAGTCCAGGCACGGAGATGGTG
GAGGGCCGCGTCACGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAG
GGAGGTCGGGAATGAGGCACCGGCGAATACCACCACAGCCGGTGCCGGTG
CCGGTGCGCGCCAGAGCGTGATCCACCTCCAGGTTCACAAGGAGCTGCAC
CATCAGCAGGAGATGCTCTACGTAGACTGTGCGATCAACCACCGGTAGGG
AGGGAGGAGGAGGACGGGGGGGAGAGGCTCAGGTCTCGGAGACCAGGCGA
GGGTGAGGGTTTTGCACCGAGGCTTGGCTTTGATTCACGTCTCTTTCCTC
CTCCTGCTCCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCGCCCCACCTTG
AACCCAGCCGCCTCCGTGCCTGTGTGGATACAGGGGCCTCCACGACCGTC
ATGTCTTTGGCGATGGCGCGCGAGTGCGGCCTCTTGTCTCATATTGACAC
GTCCGTGGTCGGGGGCGTGAAGGGAGTGGGGTTCGCCAAAATCTTGGGCT
GCGTGCACGAGGCGAAGATACGGTGA
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Coding sequence (CDS) from alignment at CM002462.1:1070562..1072037-

>rna4193 ID=rna4193|Name=rna4193|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at CM002462.1:1070562..1072037- (Nannochloropsis gaditana)
CCGCCTCCGTGCCTGTGTGGATACAGGGGCCTCCACGACCGTCATGTCTT
TGGCGATGGCGCGCGAGTGCGGCCTCTTGTCTCATATTGACACGTCCGTG
GTCGGGGGCGTGAAGGGAGTGGGGTTCGCCAAAATCTTGGGCTGCGTGCA
CGAGGCGAAGATACGGTGAATGGTCCACGAATCAAGAAGTAATTCCGTAG
CAAGGAAAAGAGGCCTTGGTATGTCACCGCACCGGCTTACCACCTCCTTA
ATCCCCCTCGGCGTCCTTCCTCCCGCCCTTCTCCTCGCTCTCCTCCTCAG
CCCCACCTCCACTGTCGATGCTACCCTGTACTGGGGAAGAAGGGGCACTG
GGGTCCATGCTCCTGCCCCGAGTACCTCCATTCCACCGGCATCCCCCCGC
TCCCACCCCCGCGGTCCCACGCATCATCTCGCCAGCGCCACGGCGCATTT
CCGCCTGCGTCCTGAAGAGGAGGACGAGGCGAAGGAAGGGAAGGAGACTA
CGCGCGAAGAAGGAGAGGGAGGGAGCGACTGCACCTACGCAAGTTTTCGG
GCGCAAATCCGTAGGGAAGTGGAGGAAGAGAGCCGTTTAGAGGAAGAGCG
GGAATTGGCTCGTGCACGGACCTCTTACGCCTTCCACCTGGCGGAGGAGC
GGCGACGGACGGGCGCAGGGTCGGAAAGCAAAGAAAAAGGACGGAGGGCG
GGCGGGGAGATGGGTGGGGTGCGAGCCTGGGCTCGGAAAAGGTCTGGCCC
CGAGGGCCGGAGGAGCAGCAGGAAGAGCGTCTTTATGGACCGAGAATCCC
GCCGGGCTCTCTCGTACGGTCGAAGCGGGCAGGCCGCCGCCGCTTCCGTC
GCCAGTGAAGAAGGTGTGCTCGAGCGCCAAGGGCGAGAATTGCCCTCTTT
CCCGCCCTCTTCCTCCGCCCCCTCCCCCCTCGACCGCAGTCCAGGCACGG
AGATGGTGGAGGGCCGCGTCACGGAGGAAGGGAGGGAGGAAGGGAGGGAG
GAAGGGAGGGAGGTCGGGAATGAGGCACCGGCGAATACCACCACAGCCGG
TGCCGGTGCCGGTGCGCGCCAGAGCGTGATCCACCTCCAGGTTCACAAGG
AGCTGCACCATCAGCAGGAGATGCTCTACGTAGACTGTGCGATCAACCAC
CGCCGCCTCCGTGCCTGTGTGGATACAGGGGCCTCCACGACCGTCATGTC
TTTGGCGATGGCGCGCGAGTGCGGCCTCTTGTCTCATATTGACACGTCCG
TGGTCGGGGGCGTGAAGGGAGTGGGGTTCGCCAAAATCTTGGGCTGCGTG
CACGAGGCGAAGATACGGTGAATGGTCCACGAATCAAGAAGTAATTCCGT
AGCAAGGAAAAGAGGCCTTGGTATGTCACCGCACCGGCTTACCACCTCCT
TAATCCCCCTCGGCGTCCTTCCTCCCGCCCTTCTCCTCGCTCTCCTCCTC
AGCCCCACCTCCACTGTCGATGCTACCCTGTACTGGGGAAGAAGGGGCAC
TGGGGTCCATGCTCCTGCCCCGAGTACCTCCATTCCACCGGCATCCCCCC
GCTCCCACCCCCGCGGTCCCACGCATCATCTCGCCAGCGCCACGGCGCAT
TTCCGCCTGCGTCCTGAAGAGGAGGACGAGGCGAAGGAAGGGAAGGAGAC
TACGCGCGAAGAAGGAGAGGGAGGGAGCGACTGCACCTACGCAAGTTTTC
GGGCGCAAATCCGTAGGGAAGTGGAGGAAGAGAGCCGTTTAGAGGAAGAG
CGGGAATTGGCTCGTGCACGGACCTCTTACGCCTTCCACCTGGCGGAGGA
GCGGCGACGGACGGGCGCAGGGTCGGAAAGCAAAGAAAAAGGACGGAGGG
CGGGCGGGGAGATGGGTGGGGTGCGAGCCTGGGCTCGGAAAAGGTCTGGC
CCCGAGGGCCGGAGGAGCAGCAGGAAGAGCGTCTTTATGGACCGAGAATC
CCGCCGGGCTCTCTCGTACGGTCGAAGCGGGCAGGCCGCCGCCGCTTCCG
TCGCCAGTGAAGAAGGTGTGCTCGAGCGCCAAGGGCGAGAATTGCCCTCT
TTCCCGCCCTCTTCCTCCGCCCCCTCCCCCCTCGACCGCAGTCCAGGCAC
GGAGATGGTGGAGGGCCGCGTCACGGAGGAAGGGAGGGAGGAAGGGAGGG
AGGAAGGGAGGGAGGTCGGGAATGAGGCACCGGCGAATACCACCACAGCC
GGTGCCGGTGCCGGTGCGCGCCAGAGCGTGATCCACCTCCAGGTTCACAA
GGAGCTGCACCATCAGCAGGAGATGCTCTACGTAGACTGTGCGATCAACC
ACCG
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Synonyms
Publications