rna4192, rna4192 (mRNA) Nannochloropsis gaditana

Overview
Namerna4192
Unique Namerna4192
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3308
Alignment locationCM002462.1:1069522..1070279 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100646g4.4623.mrna
Orig protein idgnl|cribi|Naga_100646g4.4623
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1069522..1070279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100646g4gene4036Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4192rna4192-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26491.1cds4182Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4192 ID=rna4192|Name=rna4192|organism=Nannochloropsis gaditana|type=mRNA|length=3308bp
CAATGATTGCTAATTAATGAGCGTTACGGTTCTTGAAAATTTTACTTATG
TATACTTTCATTTTAATTTCAAGTTGAGCGTGTCATTGACAAGTCTTACC
GCTCTCAACTCTCAACGACAATTGCTCGCCTAGTCCTAGAAGCAGTAGTA
TCTTCCTGCTTTGCGGCGAAGGGAGAAGGACGCAGTAGTCACTATTCCAT
TCCCATTTATCTTTCATTCCTTTATGAAGCGTCTGGTCTTTCTCTTCTGC
TTAACATGTGCTGTGCAAATAGGGGTGAGAAAAGCTGTGGGTCGAGGTTG
GCGCGGTGTAGGACGTAGTGCTGTGTCTTACCGATGCCTTTTTTATTTTG
CTCAAATCTTCCCTACCCCGAGGCAAGCACACGGCTATCCGAGGAGAGAG
GCAGCACCACTCAAGAAATCAAATCTCGGTCAGTGGCACGCGTTGCTTCG
CGGAGCTTCTTCCACTTCCATAGTTTTGAGGGGTGATTTTATCGGCCGCA
GAACCAAAATGACCCCTTGTCGTCAGAGCCTGGGCCTCCCCGTGGCAGTT
GCCCTCCTGTCCTGCGTATTCCTCTCTGTGAGGGCCTTCCACCTGCCTTC
CCCCGCCATCAGAACACGTTTATCCAGCAGCACGTCTATCAGTGCAAGCC
ATGGGCGCCCTCGCTCCCTTCCCTCCCTCTACGCCTCCTCCACCTCATCT
CCCCCTGCATTCGGGCAGTTTTTGACCGACCTCCTTGGCGATCTTTTCGC
GGGCCCCGAGAAAGTGGAGGAAACTGACGTTCTGGTGGTGGGCTCTGGGA
TCAGTGGCTCGACCACCGCGTTTTATCTGAACAAAGCTGGAGTCAAGTGT
CTGCTGACAGAGGCCAAACCCGTGGTGGGAGGGAACGTGATCAGTAAATC
GGAGTCCGGCTTCTTGTGGGAGGAGGGCCCGAATTCCTTCCAACCCACTT
ATCCGCTCATGCAAGCGACTGTAGACATGGGCCTGGCCGATGAACTGGTC
CTGGCAGACGCGAGCTTGCCCCGCTTCGTGTATTGGAAGGAGAAACTCTA
CGCCCTGCCTGGGGGCTTGGGTGACATCCCCTTCTTCAATCTCCTATCCA
TACCCGGACGTATCAGGGCGGGTCTGGGGGCTCTGGGCTTCATTCGAGGC
CCGCCGAAGGATAAGGAGGAGAGCGTCAAGGAATTCGTGACCCGGCATTT
GGGGGCAGAGACCTTCGAGCGGATCATCGACCCCTTCGTCTCGGGCGTCT
ACGCCGGGGACCCGAGCAAGCTCTCCATGAAGGCGGCCCTGAAGAAGGTG
AAACGCTTGGAGGAGCTGGGAGGGAGGGGCATTCTGGACGGGGCTTTGCT
TCGCATCCAGGAGATCCAACGGACCAAGCCGCCAGTGGTGCCGGAGCACC
CTGTGTACAAGGGCGGGCAGCTGGGTTCGTTCAAGCGAGGCTTGCAGTCG
ATGCCCCTGGCGGTGGCCAAGGCGCTGGGGAAGGAGAAGGTCCGGCTCTC
CCACAAGCTCTTGAGCGTGGTGGAAGGGAAAGGGCCGAAGGGTGGCTACG
AGGCGGTTTTTCAGACCCCCCAGGGACGGAAACGGATCAAATGCCAAGCC
CTGGCCATCACCGCCCCCGCCCACGTTGTGCACAAGCTCCTGCGTCCTTT
GGTCCCGGAGGCGGCCCGTCTTGCCGACGTGTACTATCCCCCGGTCGCCT
CCGTCACCTTGGCCTACCCGAAAACCGCCTTTCGGGAGCCGTTGCGGGGT
TTCGGAAATTTGATTCCCCGGAGCATGAAGATCCGAACGCTGGGGACCAT
CTGGTCGTCCTCCCTCTTCCCGGGCCGGGCCCCCCCCGACTACAACATGC
TGCTTTCCTACATCGGAGGGGCCCAAGATCCGGGTATCGCGGAGCTGAGC
AGCCAGCAGATCGTCAAGGAGGTAGACAGGGATATCAAGAAGGTCTTGCT
CAAGTCCGACGCCCCGGCGCCCAAGATCCTGGGCGTGCGGCTGTGGCCCA
CCGCCATCCCGCAGTACAACAAGGGCCACCTGGACATCCTCGCGAGCGTG
GAGGCAGGGGTCAAGAAACATCCGGGTCTCTTTTTGGGGGGGAATTACCG
GACAGGCGTGGCGTTTGGGGACTGCGTGACCTACGGGATGGAGGAAGCGG
GCAGGATTCAGAGCTACTTGGCTGCTAAGGCTCCGGCACCGCAAACCTCA
GTCCCTCCTTCCCCTCCTTCGGCCCTTGCGCCCGGCCCCGTGGCAGTGCC
CTCTTCCCCGCCTTCGTCTCCCCCTCCTGCCTCAGACGCGTCCGATTCCA
CGGCTCCTGCCGTAGCGGCGGCGGCGGCTGTCTCGACCGTGGCAGGGATG
GGATCAACTGGAGGAGGGAGGGAGGGAGGGCAGCCGCGGGTGCCTGAGGG
GGAAAATAGCCGGCCGCGCACGGTGGTCGCGGCGGAGGAAGGGGGGAGGG
GGGGGTCATGCAGGGTGGGGGAGGGGGAGAGAAGGAGGCCGTGCCGGCGG
CGCGTGCGGATTAGGGTTGGGTAGGAGGATGAGCATGAGGGAGGAAAACG
ATGTCAGAGAGAGGCTGCTGTCAAGGAGTGGGAGGGAGGGATGTGTGGAG
TAGTGGACAAGGAGTGGAGGAGAGAGGGGGGCTGGGGAGGTGAGAGAGAC
GAAGAATGAAAAATAAGGGAAGGGCCATGAACAAGCTCAAGGCGTTAGCT
TTCCTGTCAGTCTTGTTGGTCTAGTGTCACATCCGCAGGTAATGGGCCGA
ATAATCCCTCCCCCCTCCCTTCCATCGCCTTCAGAACCCGTGTGTCATCG
ATCCGGCTTACGTACAGTTCCTGACCACATCGTCGGGCTTTCCCTCACAC
ACCCGCCATCGAGACCCCCCCCTCGATGGCGGTAGGGAGCCCAGGGGGTC
TTCCTCCTCCTCCTCCCTTGGCGGTCTCTCCCCCCTTCCCTCCGTCGGGC
CTTGGCCGTCCCCGCCTCCTTCCTTCGTAATGACGGGCGACGGCGCGGCG
CCTATGGAGAAAGGAACCGTTTCCTCCCGACTTTTTTCCACCGCCCCCCC
GGGCGAGCGAAGGATCAATGCCTGAAGGAGGGAGGGAGGGAGAAGGGGCG
GGCGTCATGCGTCATTCTCCGGGCGGTGACAAGACCGGGTCCTTTCCTAT
CCCCGTGCCTGCTCGGGCTTTTCCCCTTTCCCCTCTCCCTCCTCCTCCCT
CCCCTTCCTCCCCCTCCTGCGTCCCTGTCTCCGCCCTCCCCCTCACTTGA
TTCTGGAAGGAGACGTCGCACCGACAGTGCCTGAGCACGTCGAGCCCGAT
CACGAAGG
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protein sequence of rna4192

>rna4192-protein ID=rna4192-protein|Name=rna4192|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
SSSLGRFQIQTRISIIDSLSPPFVIGLDVLRHCRCDVSFQNQALILRSPG
GAVEKSREETVPFSIGAAPSPVITKEGGGDGQGPTEGRGERPPREEEEED
PLGSLPPSRGGSRWRVCEGKPDDVVRNCT
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mRNA from alignment at CM002462.1:1069522..1070279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4192 ID=rna4192|Name=rna4192|organism=Nannochloropsis gaditana|type=mRNA|length=758bp|location=Sequence derived from alignment at CM002462.1:1069522..1070279- (Nannochloropsis gaditana)
TCCTCCAGCTTGGGCCGCTTCCAAATCCAGACGCGCATCTCCATTATCGA
CTCCCTGTCCCCCCCCTTCGTGATCGGGCTCGACGTGCTCAGGCACTGTC
GGTGCGACGTCTCCTTCCAGAATCAAGTGAGGGGGAGGGCGGAGACAGGG
ACGCAGGAGGGGGAGGAAGGGGAGGGAGGAGGAGGGAGAGGGGAAAGGGG
AAAAGCCCGAGCAGGCACGGGGATAGGAAAGGACCCGGTCTTGTCACCGC
CCGGAGAATGACGCATGACGCCCGCCCCTTCTCCCTCCCTCCCTCCTTCA
GGCATTGATCCTTCGCTCGCCCGGGGGGGCGGTGGAAAAAAGTCGGGAGG
AAACGGTTCCTTTCTCCATAGGCGCCGCGCCGTCGCCCGTCATTACGAAG
GAAGGAGGCGGGGACGGCCAAGGCCCGACGGAGGGAAGGGGGGAGAGACC
GCCAAGGGAGGAGGAGGAGGAAGACCCCCTGGGCTCCCTACCGCCATCGA
GGGGGGGGTCTCGATGGCGGGTGTGTGAGGGAAAGCCCGACGATGTGGTC
AGGAACTGTACGTAAGCCGGATCGATGACACACGGGTTCTGAAGGCGATG
GAAGGGAGGGGGGAGGGATTATTCGGCCCATTACCTGCGGATGTGACACT
AGACCAACAAGACTGACAGGAAAGCTAACGCCTTGAGCTTGTTCATGGCC
CTTCCCTTATTTTTCATTCTTCGTCTCTCTCACCTCCCCAGCCCCCCTCT
CTCCTCCA
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Coding sequence (CDS) from alignment at CM002462.1:1069522..1070279-

>rna4192 ID=rna4192|Name=rna4192|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002462.1:1069522..1070279- (Nannochloropsis gaditana)
GCATTGATCCTTCGCTCGCCCGGGGGGGCGGTGGAAAAAAGTCGGGAGGA
AACGGTTCCTTTCTCCATAGGCGCCGCGCCGTCGCCCGTCATTACGAAGG
AAGGAGGCGGGGACGGCCAAGGCCCGACGGAGGGAAGGGGGGAGAGACCG
CCAAGGGAGGAGGAGGAGGAAGACCCCCTGGGCTCCCTACCGCCATCGAG
GGGGGGGTCTCGATGGCGGGTGTGTGAGGGAAAGCCCGACGATGTGGTCA
GGAACTGTACGTAATCCTCCAGCTTGGGCCGCTTCCAAATCCAGACGCGC
ATCTCCATTATCGACTCCCTGTCCCCCCCCTTCGTGATCGGGCTCGACGT
GCTCAGGCACTGTCGGTGCGACGTCTCCTTCCAGAATCAAGCATTGATCC
TTCGCTCGCCCGGGGGGGCGGTGGAAAAAAGTCGGGAGGAAACGGTTCCT
TTCTCCATAGGCGCCGCGCCGTCGCCCGTCATTACGAAGGAAGGAGGCGG
GGACGGCCAAGGCCCGACGGAGGGAAGGGGGGAGAGACCGCCAAGGGAGG
AGGAGGAGGAAGACCCCCTGGGCTCCCTACCGCCATCGAGGGGGGGGTCT
CGATGGCGGGTGTGTGAGGGAAAGCCCGACGATGTGGTCAGGAACTGTAC
GTAATCCTCCAGCTTGGGCCGCTTCCAAATCCAGACGCGCATCTCCATTA
TCGACTCCCTGTCCCCCCCCTTCGTGATCGGGCTCGACGTGCTCAGGCAC
TGTCGGTGCGACGTCTCCTTCCAGAATCAA
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Synonyms
Publications