rna4190, rna4190 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4190
Unique Name	rna4190
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	222
Alignment location	CM002462.1:1064610..1066046 -

Link to JBrowse

Properties


Property Name	Value
Product	n-6 adenine-specific dna methyltransferase 1
Orig transcript id	gnl\|cribi\|Naga_100646g2.4626.mrna
Orig protein id	gnl\|cribi\|Naga_100646g2.4626
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1064610..1066046 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100646g2	gene4034	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4190	rna4190-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26494.1	cds4180	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1064610..1066046-
coding sequence from alignment at CM002462.1:1064610..1066046-

mRNA sequence

>rna4190 ID=rna4190|Name=rna4190|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGCATTGTGGGATTTCTGGCGAAATATGCGAGGAGCCTGTACTGTCTCG
TCCATCCGGTGTGCTGTATGAAAAGCGTGTCATTCTGAAATACATCGAGG
CCGAGCACAAGGACCCCGCGAATGGTGAAGAGCTCTGCCCGGACGACCTT
ATCCCTGTGAAGGCCAGCACAAGTAAGCCGCGCGGGAAGAGAGGAAGTGG
GCCGATAGGGGAAGTTCACTGA

protein sequence of rna4190

>rna4190-protein ID=rna4190-protein|Name=rna4190|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MLRSGSGCVTAVLARTLRDALGPEHCTLFISTDINSRAVRATQATGSANS
ILHHEILQADLLAPLLPRLLHSVDLLVFNPPYVPTPTSEVGSHGIEASWA
GGKDGREVLDRILDSIPNLLRPQGGCMYLVAVNENLPEDICARMREENLQ
AEVVRSRKARNEVLHVLRFIHA

mRNA from alignment at CM002462.1:1064610..1066046-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4190 ID=rna4190|Name=rna4190|organism=Nannochloropsis gaditana|type=mRNA|length=1437bp|location=Sequence derived from alignment at CM002462.1:1064610..1066046- (Nannochloropsis gaditana)
AGAACCGTAACGCTCATTAATTAGCAATCATTGTGAGTTCACCAGTAGGC
AAGCGTCGGGATCTTGCCCGTTTCGAGCCGTTCGTTCTGTCTTATGCGTG
AACAAAGTTCTTTGAAAATTTATGGAGCCATATAGCCATATTTCCAACCC
CACAGCAGACGAAGCACTGAGTTGAACCAAAATTAGACAGCGCCGGGCTG
AGCGAGTCGACGCAGCTCACCATCCGACGATTGACCGCCACTGCAGTCCT
CCCATTCTTTCATGTCGTCCCTCAGCGCCCCTCCTAGCCCTCAAGCCGAG
CTTCCTGATCTCGATCATTTGACCATGGATGACTTTAGGCATATTTACGA
GCCATCAGATGATACATTTCTCCTCATGGATGCGTTGGAAGCGGATGCAC
AAAAATTAAAAGCCCGAAAGCCGCGCATTGTGGTTGAGATAGGGTAAGGC
TGTACCTTAGATGTAAAATTAATTTCAACGATCCACGTGTATAAGCATAT
TGCGGCATCGCTGTGAATATAATTATGCTATATCTACCTACAAATGTGTC
CACGCCGCTACGATCACGCGTGCTGATTATACTTACTTACGGAAACCTGC
CATGCTCAGGTCAGGAAGCGGGTGTGTGACAGCCGTCCTGGCACGCACGC
TGCGAGATGCCCTTGGTCCCGAACACTGCACATTATTTATTTCCACAGAT
ATCAATAGCAGAGCTGTGCGTGCGACTCAGGCCACTGGCTCAGCCAATAG
TGTAAGTTTTCACAACGTTGATTGGGATGTCCTTCGGATCCCTTCTTTTT
ATCTCCGGTCGAGGCCCTCACGTGTTACGATTACTGCTACATCTCCCAAA
ATGGTCACCCCTGAATTATCTATTTTTTCGTTTGACTCCTTTGTCCTCCT
CATTTCAGATTTTGCACCATGAAATCCTCCAGGCCGACCTCCTCGCCCCC
CTCCTTCCTCGCCTCCTCCACTCGGTCGATCTGCTCGTGTTTAATCCTCC
TTACGTCCCCACACCTACTTCTGAAGTCGGCTCGCATGGTATTGAAGCCA
GTTGGGCAGGAGGGAAAGACGGAAGAGAGGTGCTGGACAGGATCCTCGAC
TCCATTCCGAACCTTCTTCGCCCTCAGGGTGGATGTATGTACTTGGTAGC
CGTGAACGAGAATCTTCCAGAAGATATTTGCGCCAGGATGCGGGAAGAAA
ATTTACAGGCAGAGGTATGTTGAAGAAGGATGAGAATGGAGCTGGCGGTA
CCAGTGTGCGCACGTCTGCATTATGTTGTCTGCCGTGCTTACGTTCCTTG
CCCCTCTCACATTTCCTCTATGAAACAGGTGGTACGCTCCCGTAAAGCTC
GAAACGAAGTCTTACACGTTTTAAGATTCATACATGCTTGAAAAGCCGGA
ATAAGCAAAGAAAAGATCAATAATTTGTAAATCAAGC

Coding sequence (CDS) from alignment at CM002462.1:1064610..1066046-

>rna4190 ID=rna4190|Name=rna4190|organism=Nannochloropsis gaditana|type=CDS|length=1557bp|location=Sequence derived from alignment at CM002462.1:1064610..1066046- (Nannochloropsis gaditana)
GTGGTACGCTCCCGTAAAGCTCGAAACGAAGTCTTACACGTTTTAAGATT
CATACATGCTTGAATTTTGCACCATGAAATCCTCCAGGCCGACCTCCTCG
CCCCCCTCCTTCCTCGCCTCCTCCACTCGGTCGATCTGCTCGTGTTTAAT
CCTCCTTACGTCCCCACACCTACTTCTGAAGTCGGCTCGCATGGTATTGA
AGCCAGTTGGGCAGGAGGGAAAGACGGAAGAGAGGTGCTGGACAGGATCC
TCGACTCCATTCCGAACCTTCTTCGCCCTCAGGGTGGATGTATGTACTTG
GTAGCCGTGAACGAGAATCTTCCAGAAGATATTTGCGCCAGGATGCGGGA
AGAAAATTTACAGGCAGAGATGCTCAGGTCAGGAAGCGGGTGTGTGACAG
CCGTCCTGGCACGCACGCTGCGAGATGCCCTTGGTCCCGAACACTGCACA
TTATTTATTTCCACAGATATCAATAGCAGAGCTGTGCGTGCGACTCAGGC
CACTGGCTCAGCCAATAGTGTGGTACGCTCCCGTAAAGCTCGAAACGAAG
TCTTACACGTTTTAAGATTCATACATGCTTGAATTTTGCACCATGAAATC
CTCCAGGCCGACCTCCTCGCCCCCCTCCTTCCTCGCCTCCTCCACTCGGT
CGATCTGCTCGTGTTTAATCCTCCTTACGTCCCCACACCTACTTCTGAAG
TCGGCTCGCATGGTATTGAAGCCAGTTGGGCAGGAGGGAAAGACGGAAGA
GAGGTGCTGGACAGGATCCTCGACTCCATTCCGAACCTTCTTCGCCCTCA
GGGTGGATGTATGTACTTGGTAGCCGTGAACGAGAATCTTCCAGAAGATA
TTTGCGCCAGGATGCGGGAAGAAAATTTACAGGCAGAGATGCTCAGGTCA
GGAAGCGGGTGTGTGACAGCCGTCCTGGCACGCACGCTGCGAGATGCCCT
TGGTCCCGAACACTGCACATTATTTATTTCCACAGATATCAATAGCAGAG
CTGTGCGTGCGACTCAGGCCACTGGCTCAGCCAATAGTGTGGTACGCTCC
CGTAAAGCTCGAAACGAAGTCTTACACGTTTTAAGATTCATACATGCTTG
AATTTTGCACCATGAAATCCTCCAGGCCGACCTCCTCGCCCCCCTCCTTC
CTCGCCTCCTCCACTCGGTCGATCTGCTCGTGTTTAATCCTCCTTACGTC
CCCACACCTACTTCTGAAGTCGGCTCGCATGGTATTGAAGCCAGTTGGGC
AGGAGGGAAAGACGGAAGAGAGGTGCTGGACAGGATCCTCGACTCCATTC
CGAACCTTCTTCGCCCTCAGGGTGGATGTATGTACTTGGTAGCCGTGAAC
GAGAATCTTCCAGAAGATATTTGCGCCAGGATGCGGGAAGAAAATTTACA
GGCAGAGATGCTCAGGTCAGGAAGCGGGTGTGTGACAGCCGTCCTGGCAC
GCACGCTGCGAGATGCCCTTGGTCCCGAACACTGCACATTATTTATTTCC
ACAGATATCAATAGCAGAGCTGTGCGTGCGACTCAGGCCACTGGCTCAGC
CAATAGT

Synonyms

Publications