rna4189, rna4189 (mRNA) Nannochloropsis gaditana

Overview
Namerna4189
Unique Namerna4189
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length219
Alignment locationCM002462.1:1063428..1063855 -

Link to JBrowse

Properties
Property NameValue
Productcell cycle control protein
Orig transcript idgnl|cribi|Naga_100646g1.4624.mrna
Orig protein idgnl|cribi|Naga_100646g1.4624
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1063428..1063855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100646g1gene4033Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4189rna4189-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26492.1cds4179Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4189 ID=rna4189|Name=rna4189|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGTGCCCTGATTGCCCGACTGTCCCGGGAGCGGGACTCGGCATTGGCAC
AGCTCTCGGCCCTCCAATCCTCCTTCGCGCAGAGGGCAGTGGCCCAAGCC
ACGGAGGAGGCGATGGAGGTGGAACCGGCGGCACAGAAGGCAGGAGATTT
GAACACGCCCTTGGGCCTGTCGGAGACGGTGCTCGGCAACATCAGCAACA
CATGGGAACGGCTGTCTAA
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protein sequence of rna4189

>rna4189-protein ID=rna4189-protein|Name=rna4189|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDL
IPVKASTSKPRGKRGSGPIGEVH
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mRNA from alignment at CM002462.1:1063428..1063855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4189 ID=rna4189|Name=rna4189|organism=Nannochloropsis gaditana|type=mRNA|length=428bp|location=Sequence derived from alignment at CM002462.1:1063428..1063855- (Nannochloropsis gaditana)
ATGCATTGTGGGAGTAAGTGTTCCATCCTCATCTTTCCCTCTTCGTATCG
GACCGCATGTTTCGTGTATCTCACCGGTCGTCCATGTGCGAACCCACAGT
TTCTGGCGAAATATGCGAGGAGCCTGTACTGTCTCGTCCATCCGGTGTGC
TGTATGAAAAGGTGGGTGTTTAGGGCGGCAGCGGAAAGGCCTGAGGGGTC
AACCCTCTCTTCGATATGCACTTCCTTCTCAACCCATGTCGCTTCCCGAC
TCCCTGCCTTAATTTAAATCAATTCACACAGCGTGTCATTCTGAAATACA
TCGAGGCCGAGCACAAGGACCCCGCGAATGGTGAAGAGCTCTGCCCGGAC
GACCTTATCCCTGTGAAGGCCAGCACAAGTAAGCCGCGCGGGAAGAGAGG
AAGTGGGCCGATAGGGGAAGTTCACTGA
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Coding sequence (CDS) from alignment at CM002462.1:1063428..1063855-

>rna4189 ID=rna4189|Name=rna4189|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at CM002462.1:1063428..1063855- (Nannochloropsis gaditana)
CGTGTCATTCTGAAATACATCGAGGCCGAGCACAAGGACCCCGCGAATGG
TGAAGAGCTCTGCCCGGACGACCTTATCCCTGTGAAGGCCAGCACAAGTA
AGCCGCGCGGGAAGAGAGGAAGTGGGCCGATAGGGGAAGTTCACTGATTT
CTGGCGAAATATGCGAGGAGCCTGTACTGTCTCGTCCATCCGGTGTGCTG
TATGAAAAGATGCATTGTGGGACGTGTCATTCTGAAATACATCGAGGCCG
AGCACAAGGACCCCGCGAATGGTGAAGAGCTCTGCCCGGACGACCTTATC
CCTGTGAAGGCCAGCACAAGTAAGCCGCGCGGGAAGAGAGGAAGTGGGCC
GATAGGGGAAGTTCACTGATTTCTGGCGAAATATGCGAGGAGCCTGTACT
GTCTCGTCCATCCGGTGTGCTGTATGAAAAGATGCATTGTGGGACGTGTC
ATTCTGAAATACATCGAGGCCGAGCACAAGGACCCCGCGAATGGTGAAGA
GCTCTGCCCGGACGACCTTATCCCTGTGAAGGCCAGCACAAGTAAGCCGC
GCGGGAAGAGAGGAAGTGGGCCGATAGGGGAAGTTCACTGATTTCTGGCG
AAATATGCGAGGAGCCTGTACTGTCTCGTCCATCCGGTGTGCTGTATGAA
AAGATGCATTGTGGGA
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Synonyms
Publications