EWM26492.1, cds4179 (CDS) Nannochloropsis gaditana

Overview
NameEWM26492.1
Unique Namecds4179
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1063843..1063855 -
Alignment locationCM002462.1:1063695..1063756 -
Alignment locationCM002462.1:1063428..1063574 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26492.1
Productcell cycle control protein
Orig transcript idgnl|cribi|Naga_100646g1.4624.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1063843..1063855 -
CM002462.1supercontigCM002462.1:1063695..1063756 -
CM002462.1supercontigCM002462.1:1063428..1063574 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006464cellular protein modification process
GO:0016567protein ubiquitination
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR003613Ubox_domain
Homology
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|585108546|gb|EWM26492.1| (cell cycle control protein [Nannochloropsis gaditana])

HSP 1 Score: 147.517 bits (371), Expect = 5.410e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKASTSKPRGKRGSGPIGEVH 73
            MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKASTSKPRGKRGSGPIGEVH
Sbjct:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKASTSKPRGKRGSGPIGEVH 73          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|1026965269|ref|XP_016610340.1| (hypothetical protein SPPG_02775 [Spizellomyces punctatus DAOM BR117] >gi|907096772|gb|KND02301.1| hypothetical protein SPPG_02775 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 73.1738 bits (178), Expect = 1.700e-13
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKASTS--KPR 61
            M C +SGE  EEPV S+ SG L+EKR+ILKYI    +DP NGEEL  DDL+P+  +    KPR
Sbjct:    1 MFCALSGETPEEPVASKKSGHLFEKRLILKYIADNGRDPVNGEELGADDLLPLNLTNKVVKPR 63          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|1032647988|gb|OAQ29284.1| (WD40 repeat-like protein [Mortierella elongata AG-77])

HSP 1 Score: 72.4034 bits (176), Expect = 2.987e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKAS--TSKPR 61
            M C ISGE  E PV+S+ SG +YE+R+I+KYIE   KDP +GE+L  DDL+ +K++  T KPR
Sbjct:    1 MFCAISGEAPEHPVVSKKSGQVYERRLIVKYIEDNGKDPVSGEDLSVDDLLDIKSTPGTVKPR 63          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|298715400|emb|CBJ28011.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.0182 bits (175), Expect = 4.466e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKASTS-KPR 61
            M C ISG+  E PV+S+ SG +YEKR+I+KYI+AE K PA GEEL  DDL+ V++  + KPR
Sbjct:    1 MQCAISGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGEELTADDLLDVRSEGAVKPR 62          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|1183351851|gb|ORX79897.1| (WD40 repeat-like protein [Anaeromyces robustus])

HSP 1 Score: 72.0182 bits (175), Expect = 4.516e-13
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKASTSKPRGK 63
            M C I+ E  ++PV+S+ +G LYEKR+ILKY+E  HK P  GEE+  DDLI +K  TS   GK
Sbjct:    1 MFCSITKEPVQDPVISKKTGHLYEKRIILKYLEENHKCPITGEEMSEDDLIELKTGTSTLAGK 63          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|367026468|ref|XP_003662518.1| (hypothetical protein MYCTH_107891 [Thermothelomyces thermophila ATCC 42464] >gi|347009787|gb|AEO57273.1| hypothetical protein MYCTH_107891 [Thermothelomyces thermophila ATCC 42464])

HSP 1 Score: 71.633 bits (174), Expect = 6.420e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKAS-TSKPR 61
            M C +SGE+ EEPV+SR +G ++EKR+ILKYIE   K+P   EEL P+DL+ VK S   +PR
Sbjct:  388 MLCALSGEVPEEPVVSRKTGTVFEKRLILKYIEENGKEPGTNEELDPEDLLDVKTSRVVRPR 449          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|672824023|gb|KFH68916.1| (hypothetical protein MVEG_05720 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-13
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKA--STSKPR 61
            M C ISGE  E PV+S+ SG +YE+R+I+KYIE   KDP  GE+L  +DL+ +K+  ST KPR
Sbjct:    1 MFCAISGEAPEHPVVSKKSGQVYERRLIVKYIEDNGKDPVTGEDLSEEDLLDIKSSPSTVKPR 63          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|1003747914|gb|KXX83014.1| (Pre-mRNA-processing factor 19 [Madurella mycetomatis])

HSP 1 Score: 71.2478 bits (173), Expect = 7.141e-13
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKAS-TSKPR 61
            M C +SGE+ EEPV+SR +G ++EKR+ILKYIE   K+P   EEL  +DL+P+K S   +PR
Sbjct:    1 MFCALSGEVPEEPVVSRKTGTVFEKRLILKYIEENGKEPGTDEELDAEDLLPLKTSRVVRPR 62          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|1190918787|gb|OTB07905.1| (hypothetical protein M426DRAFT_317412 [Hypoxylon sp. CI-4A])

HSP 1 Score: 71.2478 bits (173), Expect = 8.514e-13
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKAS-TSKPR 61
            M C ISGE  +EPV+S+ SG ++EKR+I KYIE   KDP +GE+L  DDL+P+K+S   +PR
Sbjct:    1 MLCSISGEAPQEPVVSKLSGAVFEKRLIEKYIEENGKDPVSGEDLSLDDLLPIKSSRVVRPR 62          
BLAST of EWM26492.1 vs. NCBI_GenBank
Match: gi|1190932069|gb|OTB20784.1| (hypothetical protein K445DRAFT_313259 [Daldinia sp. EC12])

HSP 1 Score: 70.8626 bits (172), Expect = 1.222e-12
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 MHCGISGEICEEPVLSRPSGVLYEKRVILKYIEAEHKDPANGEELCPDDLIPVKAS-TSKPR 61
            M C +SGE  +EPV+S+ SG ++EKR+I KYIE   KDP +GE+L  DDL+P+K+S   +PR
Sbjct:    1 MLCSLSGEAPQEPVVSKLSGAVFEKRLIEKYIEENGKDPVSGEDLTVDDLLPIKSSRVVRPR 62          
The following BLAST results are available for this feature:
BLAST of EWM26492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108546|gb|EWM26492.1|5.410e-45100.00cell cycle control protein [Nannochloropsis gadita... [more]
gi|1026965269|ref|XP_016610340.1|1.700e-1355.56hypothetical protein SPPG_02775 [Spizellomyces pun... [more]
gi|1032647988|gb|OAQ29284.1|2.987e-1353.97WD40 repeat-like protein [Mortierella elongata AG-... [more]
gi|298715400|emb|CBJ28011.1|4.466e-1356.45conserved unknown protein [Ectocarpus siliculosus][more]
gi|1183351851|gb|ORX79897.1|4.516e-1352.38WD40 repeat-like protein [Anaeromyces robustus][more]
gi|367026468|ref|XP_003662518.1|6.420e-1354.84hypothetical protein MYCTH_107891 [Thermothelomyce... [more]
gi|672824023|gb|KFH68916.1|6.449e-1353.97hypothetical protein MVEG_05720 [Mortierella verti... [more]
gi|1003747914|gb|KXX83014.1|7.141e-1353.23Pre-mRNA-processing factor 19 [Madurella mycetomat... [more]
gi|1190918787|gb|OTB07905.1|8.514e-1354.84hypothetical protein M426DRAFT_317412 [Hypoxylon s... [more]
gi|1190932069|gb|OTB20784.1|1.222e-1253.23hypothetical protein K445DRAFT_313259 [Daldinia sp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4189rna4189Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications