rna4185, rna4185 (mRNA) Nannochloropsis gaditana

Overview
Namerna4185
Unique Namerna4185
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length683
Alignment locationCM002462.1:1055719..1057301 +

Link to JBrowse

Properties
Property NameValue
Product60s ribosomal protein l31
Orig transcript idgnl|cribi|Naga_101201g2.3345.mrna
Orig protein idgnl|cribi|Naga_101201g2.3345
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1055719..1057301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101201g2gene4028Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4185rna4185-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26499.1cds4175Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4185 ID=rna4185|Name=rna4185|organism=Nannochloropsis gaditana|type=mRNA|length=683bp
TTTTCACAGAGGGATAGAGCACTTACAAAATAGAAAGGATGGCTACGATG
CGGTGTAAAAGGAGAAGAATATCAACTATCTGTCCTGCAGCAGCAGGAGC
AACAGCAGCTGCATTCCTTATCGCGACAACACGGGCTTTTGTATATCAAC
CCCAGCGGCTTCATGTAACCCAGCATGTTCCTGTAAGAGGCAGCAGCCCC
GACTGGACCGCAATGGGCAGGACATGTGTTGGTAAAAATCTACCCTCTTG
TCAAAGTCGAGAATTTCCCGAATGTAGCTTGCGGACCCGTGGCAGCACGG
GCCTGACATGTTCCAGTCGGTCTGGGGGCGCTGCCGGAATCCCTTTGCGG
AACAGAGCACCTCGATGCCCATCACCGACCTTTGCCAGCTCTTTCTCTTG
CCATGACGCTATCTGCAAGCCCCTCCTTTCACTTTCTCCGGCGTCTTTCT
CCATCGTGCCATCCTCCCGGCTGTACGCCTCGTCTTTGCCTTCCCCCAAG
ACGGACGAGGAGGAGGAGCCCGTTCCCCCCGATGCGTGGAGGCTCTTGGC
GCTTTCCTTCCTGTGCATGATCATCTGTTCTTTGGATCGAGTCGCCATGT
CTGTGGCCATCTTGCCCATGTCCCTAGAATTTGGCTTCAGTGGTGAGAGC
AGCGAGGGGAGGAGGGGAGGGAGAGAGGGAGGA
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protein sequence of rna4185

>rna4185-protein ID=rna4185-protein|Name=rna4185|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALG
TKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTL
VEVDSFKGLQNTSVDE
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mRNA from alignment at CM002462.1:1055719..1057301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4185 ID=rna4185|Name=rna4185|organism=Nannochloropsis gaditana|type=mRNA|length=1583bp|location=Sequence derived from alignment at CM002462.1:1055719..1057301+ (Nannochloropsis gaditana)
tccccgaCTTTCTCGCCTTGTTTTGCTTCTCCGTGGTGTGAGCACGTTGC
TGCTGTTGAAATGTCGTGGCTTTATGCGATTGGAGATTGCATGAACGTGC
GAAATGCGCAAGACTCTGGTGTGTCGTGGGATTGGAAGGGGTGGCTTTGG
TGTCCCTCGAACGCTGCCCGACAGAGAAcgaagaagggatgggaagaaaT
GTGCAAAAAATGTCCCATTGAAGCTCAGCATCGTGTGTATAATGTTTGAG
ATGTTAAATTTTGGCATTTCAGTCATAATGGTGCCCTTTGATTGTGCCGG
GAAATATATTATTTTCTGCCCCCTGGCAGCCCGCCCATCGTCCACTCCTC
GCTCTTAAACCTGCTTCTTATCCCACTCACAAGCCGCATTATTTCCTTCA
TCACCGTAGAAACGATGGTGAAGGCAACGAAGGCGCCCAAGGCCGATGTG
GTCACCAGGTATGTTGAGTGGAAGAaatcgaggagggaggccggaggaGA
GTCagagaagatggagacggGCATGAACGCAGAGGTCGTATCCGTCGGGG
TGCTTCTAGCGGTTGATAGACTTGACGTCTGTACCCGTTAAGTGTATGAG
TGCAGCATTGTATGCGGGTAGCGAAGTCCAAGTTCCTTTGAAGGCTTCCG
GACGAGCGCAACGAGTCATTCCCAtcgtccctccatccccctgcctccct
ctcacctttcctccctctcaccaaACCCCAGACTCTACACGATCAATCTT
CACAAGCGTCTGCACAAGATCACCTTCAAGGAGAGGGCCCCTCGTGCCAT
TCGGGAGATCAAGAAGTTCGCAATTAAGGCGCTAGGGACCAAGGACGTCC
GCGTCGATGCCAGGTCTGGATACCCCTTCCGTcatctcccccgccctccc
ctcctccctacctatTCTTGCCTTGTCTGGAATTCGTCACCGTATGGTTG
TACAGCTTTTTTGTACGGCGTGTGTTGTCCGTGTTGATGGTTTGCATCAC
TGAAGGTCActcacgccctctcccccgcgccTCCTGTTCCTTGCATTTTC
CGCCGTAGCCTCAACAAATACATCTGGAAGCAAGGCATCCGGAACGTTCC
CTACCGAGTGCGAGTCAAGCTGGCTCGGCGGCGcaatgaggatgaggagg
ccGCTGAGAAGGTAGGCATTGAGGGGgtttggaaagggagggaggcatgg
agggTAGAAGGGGAGTTCGTGCATTCTTAGTGAAGGACCAATCACCCACG
CGCCATTTTTTGGAAACAATGTCTCACTTCCTTATTCCCCTTTGGCTTAT
ACCATGGTTGTAGCTCTACACGCTGGTGACCCTTGTAGAGGTGGACAGCT
TCAAGGGGCTGCAGAATACCTCGGTGGATGAGTAGGACGGTTTTGAGCAC
AaaaagggggtggggagtaGGGGGGGGCATAGGGAAATGCTGAAGGAGGT
CGTCCAGACTCTCTGCGTGCGAGATTTCCTCCTGGAGCGCCGGGcaagac
ggggagaagggagggaggagaaggtcgacGTCCTTGAgtaggagaaaaga
aaatcaaggcTTCACGGTTCCCGGCTCGAACCT
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Coding sequence (CDS) from alignment at CM002462.1:1055719..1057301+

>rna4185 ID=rna4185|Name=rna4185|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002462.1:1055719..1057301+ (Nannochloropsis gaditana)
ATGGTGAAGGCAACGAAGGCGCCCAAGGCCGATGTGGTCACCAGACTCTA
CACGATCAATCTTCACAAGCGTCTGCACAAGATCACCTTCAAGGAGAGGG
CCCCTCGTGCCATTCGGGAGATCAAGAAGTTCGCAATTAAGGCGCTAGGG
ACCAAGGACGTCCGCGTCGATGCCAGCCTCAACAAATACATCTGGAAGCA
AGGCATCCGGAACGTTCCCTACCGAGTGCGAGTCAAGCTGGCTCGGCGGC
GcaatgaggatgaggaggccGCTGAGAAGCTCTACACGCTGGTGACCCTT
GTAGAGGTGGACAGCTTCAAGGGGCTGCAGAATACCTCGGTGGATGAGTA
GATGGTGAAGGCAACGAAGGCGCCCAAGGCCGATGTGGTCACCAGACTCT
ACACGATCAATCTTCACAAGCGTCTGCACAAGATCACCTTCAAGGAGAGG
GCCCCTCGTGCCATTCGGGAGATCAAGAAGTTCGCAATTAAGGCGCTAGG
GACCAAGGACGTCCGCGTCGATGCCAGCCTCAACAAATACATCTGGAAGC
AAGGCATCCGGAACGTTCCCTACCGAGTGCGAGTCAAGCTGGCTCGGCGG
CGcaatgaggatgaggaggccGCTGAGAAGCTCTACACGCTGGTGACCCT
TGTAGAGGTGGACAGCTTCAAGGGGCTGCAGAATACCTCGGTGGATGAGT
AGATGGTGAAGGCAACGAAGGCGCCCAAGGCCGATGTGGTCACCAGACTC
TACACGATCAATCTTCACAAGCGTCTGCACAAGATCACCTTCAAGGAGAG
GGCCCCTCGTGCCATTCGGGAGATCAAGAAGTTCGCAATTAAGGCGCTAG
GGACCAAGGACGTCCGCGTCGATGCCAGCCTCAACAAATACATCTGGAAG
CAAGGCATCCGGAACGTTCCCTACCGAGTGCGAGTCAAGCTGGCTCGGCG
GCGcaatgaggatgaggaggccGCTGAGAAGCTCTACACGCTGGTGACCC
TTGTAGAGGTGGACAGCTTCAAGGGGCTGCAGAATACCTCGGTGGATGAG
TAGATGGTGAAGGCAACGAAGGCGCCCAAGGCCGATGTGGTCACCAGACT
CTACACGATCAATCTTCACAAGCGTCTGCACAAGATCACCTTCAAGGAGA
GGGCCCCTCGTGCCATTCGGGAGATCAAGAAGTTCGCAATTAAGGCGCTA
GGGACCAAGGACGTCCGCGTCGATGCCAGCCTCAACAAATACATCTGGAA
GCAAGGCATCCGGAACGTTCCCTACCGAGTGCGAGTCAAGCTGGCTCGGC
GGCGcaatgaggatgaggaggccGCTGAGAAGCTCTACACGCTGGTGACC
CTTGTAGAGGTGGACAGCTTCAAGGGGCTGCAGAATACCTCGGTGGATGA
GTAG
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Synonyms
Publications