EWM26499.1, cds4175 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|553182659|ref|XP_005853763.1| (large subunit ribosomal protein L31e [Nannochloropsis gaditana CCMP526] >gi|422295298|gb|EKU22597.1| large subunit ribosomal protein L31e [Nannochloropsis gaditana CCMP526] >gi|585108557|gb|EWM26499.1| 60s ribosomal protein l31 [Nannochloropsis gaditana]) HSP 1 Score: 233.802 bits (595), Expect = 7.406e-78 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query: 1 MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116
MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE
Sbjct: 1 MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|14423905|sp|Q9XGL4.1|RL31_CYAPA (RecName: Full=60S ribosomal protein L31 >gi|5123727|emb|CAB45375.1| ribosomal protein L31 [Cyanophora paradoxa]) HSP 1 Score: 162.925 bits (411), Expect = 9.679e-50 Identity = 77/110 (70.00%), Postives = 93/110 (84.55%), Query Frame = 0
Query: 6 KAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
K+ A++VTR YTINLHKRLH + FK+RAPRA++EIKKFA K +GT DVRVD LNK++W QGIR+VPYRVRV+LAR+RN+DE+A EKLYTLVT V V SFKGLQ +VD
Sbjct: 8 KSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTYVPVTSFKGLQTQNVD 117
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|196012421|ref|XP_002116073.1| (expressed hypothetical protein [Trichoplax adhaerens] >gi|190581396|gb|EDV21473.1| expressed hypothetical protein [Trichoplax adhaerens]) HSP 1 Score: 162.54 bits (410), Expect = 1.414e-49 Identity = 74/105 (70.48%), Postives = 93/105 (88.57%), Query Frame = 0
Query: 11 DVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
++V+R YT++LHKRLH + FK+RAPRAI+E+KKFAIKA+GT DVRVD+ LNK+IW +GIRNVP+RVRV L+R+RNEDE+AA KLYTLVT V V+SFKGLQ +VD
Sbjct: 15 EIVSREYTVHLHKRLHGVGFKKRAPRAIKELKKFAIKAMGTTDVRVDSGLNKHIWSKGIRNVPFRVRVCLSRKRNEDEDAANKLYTLVTHVPVESFKGLQTVNVD 119
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|698777526|ref|XP_009821807.1| (60S ribosomal protein L31 [Aphanomyces astaci] >gi|574123932|gb|ETV89407.1| 60S ribosomal protein L31 [Aphanomyces astaci]) HSP 1 Score: 162.155 bits (409), Expect = 1.706e-49 Identity = 72/107 (67.29%), Postives = 93/107 (86.92%), Query Frame = 0
Query: 10 ADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116
ADVV+R YTINLHKRLH TFK++AP+A+REIKKFA KA+GT DVR+D+ LNK++W QG+RN+PYRVRV+L+R+RNEDE+A EKLYTLV V+V ++KGL +V+E
Sbjct: 15 ADVVSRDYTINLHKRLHGATFKKKAPKAVREIKKFAQKAMGTADVRIDSKLNKFVWSQGVRNIPYRVRVRLSRKRNEDEDAKEKLYTLVQHVQVSTYKGLSTENVEE 121
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|675384628|gb|KFM77525.1| (60S ribosomal protein L31, partial [Stegodyphus mimosarum]) HSP 1 Score: 159.844 bits (403), Expect = 1.606e-48 Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0
Query: 3 KATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
K K+ ++VVTR YTI+LHKRLH + FK+RAPRAI+EI+KFA K +GT DVRVD LNK+IW +GIRNVPYRVRV+L+RRRNEDE++ KLYTLVT V V SFKGLQ +VD
Sbjct: 8 KKGKSALSEVVTREYTIHLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFIWSKGIRNVPYRVRVQLSRRRNEDEDSIHKLYTLVTHVPVTSFKGLQTENVD 120
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|1210512348|dbj|GAX28617.1| (large subunit ribosomal protein L31e [Fistulifera solaris] >gi|1210521189|dbj|GAX19937.1| large subunit ribosomal protein L31e [Fistulifera solaris]) HSP 1 Score: 159.073 bits (401), Expect = 3.151e-48 Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = 0
Query: 1 MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
MVK APK D+VTR YTI+L KR+HK+ FK RAPRA++EI+ FA KA+GT DVR+DA+LNK++WK G++NVP RVRV+L+R+RNEDE+A EKLYTL LVEV +FKGL +VD
Sbjct: 1 MVKG--APKPDLVTRDYTIHLSKRVHKLQFKRRAPRAMKEIRAFAQKAMGTSDVRIDAALNKFVWKSGVKNVPTRVRVRLSRKRNEDEDADEKLYTLAQLVEVSTFKGLSTENVD 113
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|156382415|ref|XP_001632549.1| (predicted protein [Nematostella vectensis] >gi|156219606|gb|EDO40486.1| predicted protein [Nematostella vectensis]) HSP 1 Score: 158.303 bits (399), Expect = 7.063e-48 Identity = 78/120 (65.00%), Postives = 93/120 (77.50%), Query Frame = 0
Query: 1 MVKATKAPKA-----DVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
MVK T K +VVTR YTINLHKR+H I FK+RAPRAI+EI+KFA K +GT DVR+D LNK++W QGIRNVPYRVRV+LAR+RNEDE++ KLYTLVT V V +FKGLQ V+
Sbjct: 1 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGIGFKKRAPRAIKEIRKFAEKMMGTPDVRIDTRLNKHVWNQGIRNVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVE 120
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|198434166|ref|XP_002128932.1| (PREDICTED: 60S ribosomal protein L31 [Ciona intestinalis] >gi|198434168|ref|XP_002129027.1| PREDICTED: 60S ribosomal protein L31 [Ciona intestinalis]) HSP 1 Score: 158.303 bits (399), Expect = 8.389e-48 Identity = 73/114 (64.04%), Postives = 94/114 (82.46%), Query Frame = 0
Query: 2 VKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
VKA K DVVTR YTI++HKR+H + FK+RAPRA++EI+KFA+K +GT DVR+D LNK++W QG+RNVPYR+RV+LAR+RNEDE++A KLYTLVT V V +FKGL +VD
Sbjct: 13 VKAMK----DVVTREYTIHMHKRIHGMGFKKRAPRAVKEIRKFALKMMGTSDVRIDTRLNKFVWSQGVRNVPYRIRVRLARKRNEDEDSANKLYTLVTYVPVATFKGLNTVNVD 122
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|160552257|gb|ABX44834.1| (putative 60S ribosomal protein RPL31 [Flustra foliacea]) HSP 1 Score: 157.532 bits (397), Expect = 1.171e-47 Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 0
Query: 6 KAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
K+ +VVTR YTIN+HKR+H + FK+RAPRAI+EI+KFA+K +GT DVR+D LNK++W GIRNVPYR+RV+L+R+RNEDE++AEKLYTLVT V V +FKGL +VD
Sbjct: 11 KSAMNEVVTREYTINMHKRIHGMGFKKRAPRAIKEIRKFALKTMGTADVRIDTRLNKHVWSCGIRNVPYRLRVRLSRKRNEDEDSAEKLYTLVTFVPVATFKGLMTVNVD 120
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|1173951195|gb|OQR99108.1| (60S ribosomal protein L31 [Achlya hypogyna]) HSP 1 Score: 157.147 bits (396), Expect = 2.147e-47 Identity = 73/114 (64.04%), Postives = 93/114 (81.58%), Query Frame = 0
Query: 3 KATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116
K TK ADV++R YTINLHKRLH TFK++AP+A+REIK FA KA+ T DVR+DA LNK+IW QG+RN+PYRVRV+L+R+RN+DE A EKLYTLV V+V ++KG Q +V+E
Sbjct: 7 KKTKTVVADVISRDYTINLHKRLHGATFKKKAPKAVREIKAFAQKAMKTSDVRIDAKLNKFIWSQGVRNIPYRVRVRLSRKRNDDENAKEKLYTLVQHVQVATYKGTQTENVEE 120 The following BLAST results are available for this feature:
BLAST of EWM26499.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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