EWM26499.1, cds4175 (CDS) Nannochloropsis gaditana

Overview
NameEWM26499.1
Unique Namecds4175
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1056133..1056176 +
Alignment locationCM002462.1:1056450..1056581 +
Alignment locationCM002462.1:1056777..1056879 +
Alignment locationCM002462.1:1057032..1057103 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26499.1
Product60s ribosomal protein l31
Orig transcript idgnl|cribi|Naga_101201g2.3345.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1056133..1056176 +
CM002462.1supercontigCM002462.1:1056450..1056581 +
CM002462.1supercontigCM002462.1:1056777..1056879 +
CM002462.1supercontigCM002462.1:1057032..1057103 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020052Ribosomal_L31e_CS
IPR000054Ribosomal_L31e
IPR023621Ribosomal_L31e_dom
Homology
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|553182659|ref|XP_005853763.1| (large subunit ribosomal protein L31e [Nannochloropsis gaditana CCMP526] >gi|422295298|gb|EKU22597.1| large subunit ribosomal protein L31e [Nannochloropsis gaditana CCMP526] >gi|585108557|gb|EWM26499.1| 60s ribosomal protein l31 [Nannochloropsis gaditana])

HSP 1 Score: 233.802 bits (595), Expect = 7.406e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query:    1 MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116
            MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE
Sbjct:    1 MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|14423905|sp|Q9XGL4.1|RL31_CYAPA (RecName: Full=60S ribosomal protein L31 >gi|5123727|emb|CAB45375.1| ribosomal protein L31 [Cyanophora paradoxa])

HSP 1 Score: 162.925 bits (411), Expect = 9.679e-50
Identity = 77/110 (70.00%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    6 KAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
            K+  A++VTR YTINLHKRLH + FK+RAPRA++EIKKFA K +GT DVRVD  LNK++W QGIR+VPYRVRV+LAR+RN+DE+A EKLYTLVT V V SFKGLQ  +VD
Sbjct:    8 KSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTYVPVTSFKGLQTQNVD 117          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|196012421|ref|XP_002116073.1| (expressed hypothetical protein [Trichoplax adhaerens] >gi|190581396|gb|EDV21473.1| expressed hypothetical protein [Trichoplax adhaerens])

HSP 1 Score: 162.54 bits (410), Expect = 1.414e-49
Identity = 74/105 (70.48%), Postives = 93/105 (88.57%), Query Frame = 0
Query:   11 DVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
            ++V+R YT++LHKRLH + FK+RAPRAI+E+KKFAIKA+GT DVRVD+ LNK+IW +GIRNVP+RVRV L+R+RNEDE+AA KLYTLVT V V+SFKGLQ  +VD
Sbjct:   15 EIVSREYTVHLHKRLHGVGFKKRAPRAIKELKKFAIKAMGTTDVRVDSGLNKHIWSKGIRNVPFRVRVCLSRKRNEDEDAANKLYTLVTHVPVESFKGLQTVNVD 119          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|698777526|ref|XP_009821807.1| (60S ribosomal protein L31 [Aphanomyces astaci] >gi|574123932|gb|ETV89407.1| 60S ribosomal protein L31 [Aphanomyces astaci])

HSP 1 Score: 162.155 bits (409), Expect = 1.706e-49
Identity = 72/107 (67.29%), Postives = 93/107 (86.92%), Query Frame = 0
Query:   10 ADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116
            ADVV+R YTINLHKRLH  TFK++AP+A+REIKKFA KA+GT DVR+D+ LNK++W QG+RN+PYRVRV+L+R+RNEDE+A EKLYTLV  V+V ++KGL   +V+E
Sbjct:   15 ADVVSRDYTINLHKRLHGATFKKKAPKAVREIKKFAQKAMGTADVRIDSKLNKFVWSQGVRNIPYRVRVRLSRKRNEDEDAKEKLYTLVQHVQVSTYKGLSTENVEE 121          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|675384628|gb|KFM77525.1| (60S ribosomal protein L31, partial [Stegodyphus mimosarum])

HSP 1 Score: 159.844 bits (403), Expect = 1.606e-48
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0
Query:    3 KATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
            K  K+  ++VVTR YTI+LHKRLH + FK+RAPRAI+EI+KFA K +GT DVRVD  LNK+IW +GIRNVPYRVRV+L+RRRNEDE++  KLYTLVT V V SFKGLQ  +VD
Sbjct:    8 KKGKSALSEVVTREYTIHLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFIWSKGIRNVPYRVRVQLSRRRNEDEDSIHKLYTLVTHVPVTSFKGLQTENVD 120          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|1210512348|dbj|GAX28617.1| (large subunit ribosomal protein L31e [Fistulifera solaris] >gi|1210521189|dbj|GAX19937.1| large subunit ribosomal protein L31e [Fistulifera solaris])

HSP 1 Score: 159.073 bits (401), Expect = 3.151e-48
Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = 0
Query:    1 MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
            MVK   APK D+VTR YTI+L KR+HK+ FK RAPRA++EI+ FA KA+GT DVR+DA+LNK++WK G++NVP RVRV+L+R+RNEDE+A EKLYTL  LVEV +FKGL   +VD
Sbjct:    1 MVKG--APKPDLVTRDYTIHLSKRVHKLQFKRRAPRAMKEIRAFAQKAMGTSDVRIDAALNKFVWKSGVKNVPTRVRVRLSRKRNEDEDADEKLYTLAQLVEVSTFKGLSTENVD 113          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|156382415|ref|XP_001632549.1| (predicted protein [Nematostella vectensis] >gi|156219606|gb|EDO40486.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 158.303 bits (399), Expect = 7.063e-48
Identity = 78/120 (65.00%), Postives = 93/120 (77.50%), Query Frame = 0
Query:    1 MVKATKAPKA-----DVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
            MVK T   K      +VVTR YTINLHKR+H I FK+RAPRAI+EI+KFA K +GT DVR+D  LNK++W QGIRNVPYRVRV+LAR+RNEDE++  KLYTLVT V V +FKGLQ   V+
Sbjct:    1 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGIGFKKRAPRAIKEIRKFAEKMMGTPDVRIDTRLNKHVWNQGIRNVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVE 120          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|198434166|ref|XP_002128932.1| (PREDICTED: 60S ribosomal protein L31 [Ciona intestinalis] >gi|198434168|ref|XP_002129027.1| PREDICTED: 60S ribosomal protein L31 [Ciona intestinalis])

HSP 1 Score: 158.303 bits (399), Expect = 8.389e-48
Identity = 73/114 (64.04%), Postives = 94/114 (82.46%), Query Frame = 0
Query:    2 VKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
            VKA K    DVVTR YTI++HKR+H + FK+RAPRA++EI+KFA+K +GT DVR+D  LNK++W QG+RNVPYR+RV+LAR+RNEDE++A KLYTLVT V V +FKGL   +VD
Sbjct:   13 VKAMK----DVVTREYTIHMHKRIHGMGFKKRAPRAVKEIRKFALKMMGTSDVRIDTRLNKFVWSQGVRNVPYRIRVRLARKRNEDEDSANKLYTLVTYVPVATFKGLNTVNVD 122          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|160552257|gb|ABX44834.1| (putative 60S ribosomal protein RPL31 [Flustra foliacea])

HSP 1 Score: 157.532 bits (397), Expect = 1.171e-47
Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 0
Query:    6 KAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVD 115
            K+   +VVTR YTIN+HKR+H + FK+RAPRAI+EI+KFA+K +GT DVR+D  LNK++W  GIRNVPYR+RV+L+R+RNEDE++AEKLYTLVT V V +FKGL   +VD
Sbjct:   11 KSAMNEVVTREYTINMHKRIHGMGFKKRAPRAIKEIRKFALKTMGTADVRIDTRLNKHVWSCGIRNVPYRLRVRLSRKRNEDEDSAEKLYTLVTFVPVATFKGLMTVNVD 120          
BLAST of EWM26499.1 vs. NCBI_GenBank
Match: gi|1173951195|gb|OQR99108.1| (60S ribosomal protein L31 [Achlya hypogyna])

HSP 1 Score: 157.147 bits (396), Expect = 2.147e-47
Identity = 73/114 (64.04%), Postives = 93/114 (81.58%), Query Frame = 0
Query:    3 KATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116
            K TK   ADV++R YTINLHKRLH  TFK++AP+A+REIK FA KA+ T DVR+DA LNK+IW QG+RN+PYRVRV+L+R+RN+DE A EKLYTLV  V+V ++KG Q  +V+E
Sbjct:    7 KKTKTVVADVISRDYTINLHKRLHGATFKKKAPKAVREIKAFAQKAMKTSDVRIDAKLNKFIWSQGVRNIPYRVRVRLSRKRNDDENAKEKLYTLVQHVQVATYKGTQTENVEE 120          
The following BLAST results are available for this feature:
BLAST of EWM26499.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553182659|ref|XP_005853763.1|7.406e-78100.00large subunit ribosomal protein L31e [Nannochlorop... [more]
gi|14423905|sp|Q9XGL4.1|RL31_CYAPA9.679e-5070.00RecName: Full=60S ribosomal protein L31 >gi|512372... [more]
gi|196012421|ref|XP_002116073.1|1.414e-4970.48expressed hypothetical protein [Trichoplax adhaere... [more]
gi|698777526|ref|XP_009821807.1|1.706e-4967.2960S ribosomal protein L31 [Aphanomyces astaci] >gi... [more]
gi|675384628|gb|KFM77525.1|1.606e-4868.1460S ribosomal protein L31, partial [Stegodyphus mi... [more]
gi|1210512348|dbj|GAX28617.1|3.151e-4865.22large subunit ribosomal protein L31e [Fistulifera ... [more]
gi|156382415|ref|XP_001632549.1|7.063e-4865.00predicted protein [Nematostella vectensis] >gi|156... [more]
gi|198434166|ref|XP_002128932.1|8.389e-4864.04PREDICTED: 60S ribosomal protein L31 [Ciona intest... [more]
gi|160552257|gb|ABX44834.1|1.171e-4764.55putative 60S ribosomal protein RPL31 [Flustra foli... [more]
gi|1173951195|gb|OQR99108.1|2.147e-4764.0460S ribosomal protein L31 [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4185rna4185Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications