rna4181, rna4181 (mRNA) Nannochloropsis gaditana

Overview
Namerna4181
Unique Namerna4181
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length402
Alignment locationCM002462.1:1049176..1050157 +

Link to JBrowse

Properties
Property NameValue
Productatp binding protein
Orig transcript idgnl|cribi|Naga_102155g1.3615.mrna
Orig protein idgnl|cribi|Naga_102155g1.3615
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1049176..1050157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102155g1gene4024Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4181rna4181-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26502.1cds4171Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4181 ID=rna4181|Name=rna4181|organism=Nannochloropsis gaditana|type=mRNA|length=402bp
ATGCTGCCCTCCAGTACCACCACCTCCTCCTCTGGGAAGTACGAGGACCG
AATCGGAAATGACACCGAAACCAGCTCAACGCGCGAGCTAACGATCCAAA
ACAGCAATAGTAGCAACAGCCTGGACCAGACGACCTCAAGACTCTCCTCT
CCCTCGGCTTCTACCTCTTCCTCCGTCTCAGGCGCTAGTCTGGGATGGAA
GCTGGATTGGGAGCACAGATATGGAGTCGCGACGGTCGATCTTGGCCTGG
CCCTTCCTCTTGTGTTTCCTTCCCCCTCCCCCGCCCCGCCCGCCCACGAT
GCTCGAGCCGAGGCCATTGCGGATGACCAAGAGGAAGATGACAGAGGGAT
GGAAGACCCAGAAACGACGCCGCCTGTGCAAACACTCGCTTGCCGTCCCT
GA
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protein sequence of rna4181

>rna4181-protein ID=rna4181-protein|Name=rna4181|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MTQCTGNAYYLAPEVFRGQQYTEKADCYSYGILLWELFTRKYPFATLNPR
SAAFQQAEGLRPPLAEVEAQPPAVLELMERAWHADPAQRMSFKDMASAWD
RLEDEEVLPA
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mRNA from alignment at CM002462.1:1049176..1050157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4181 ID=rna4181|Name=rna4181|organism=Nannochloropsis gaditana|type=mRNA|length=982bp|location=Sequence derived from alignment at CM002462.1:1049176..1050157+ (Nannochloropsis gaditana)
cccccccttctcccgtcttattcccctccctcccagcttcATGACGCAAT
GCACGGGGAATGCGTACTACCTGGCGCCAGAGGTCTTTCGAGGCCAGCAA
TACACCGAAAAGGCAGACTGCTACTCCTACGGTATCGTccactccccctc
tttctccttccttccttccctccctttcattccCACCGGCTCCCCGATGC
AGCCAAGGCGTTCCTGCTCCTAccccgcttccttcttctctcctctccaa
TTCCCACTGGCTCACAAggtcgccttccctccccctctctccccccttcc
tttccgtgtTGTAGGCATTCTTCTGTGGGAGCTTTTCACCCGCAAGTACC
CCTTTGCCACACTCAACCCTCGCTCCGCGGCCTTTCAACAAGCAGAAGGC
TTGCGTCCCCCCCTTGCCGAGgtcgggccccgccctccctccttccctcc
ctccttccttcccatgtcCTTTCGAAATCACTCGCTCGTGCGATCATCAC
AGATCCGGTGACCTCTCTGTCCCAGCCCATctcatctcccctccctccct
ccctccctccctcccttggccagGTCGAGGCCCAACCCCCTGCGGTCCTG
GAGCTGATGGAACGCGCCTGGCACGCCGACCCCGCTCAACGAATGTCTTT
CAAGGACATGGCATCGGTAAAGTacctcatccccccctccttccctttct
ccgtttccccctctctgtcGCCCTGGCCGGTTTCTGCGTGTGGTCTGCTG
GGCTTTTTCGGGGAGGAATGGGTGTCAATGTGGGACTTGGAAGGGCAAAT
GGAGGTGGGAGGTAGACCTTACTCGGgctctgggagggaggcagagaaga
cccgagggaggcagcatGGGGGTGAAGACGGCAtgactcgccctccttcc
caccctcctctcactcctgcgctttccttccccggaGGGCAGGCCTGGGA
CCGcctcgaggacgaggaagtgctGCCAGCGC
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Coding sequence (CDS) from alignment at CM002462.1:1049176..1050157+

>rna4181 ID=rna4181|Name=rna4181|organism=Nannochloropsis gaditana|type=CDS|length=1324bp|location=Sequence derived from alignment at CM002462.1:1049176..1050157+ (Nannochloropsis gaditana)
ATGACGCAATGCACGGGGAATGCGTACTACCTGGCGCCAGAGGTCTTTCG
AGGCCAGCAATACACCGAAAAGGCAGACTGCTACTCCTACGGCATTCTTC
TGTGGGAGCTTTTCACCCGCAAGTACCCCTTTGCCACACTCAACCCTCGC
TCCGCGGCCTTTCAACAAGCAGAAGGCTTGCGTCCCCCCCTTGCCGAGGT
CGAGGCCCAACCCCCTGCGGTCCTGGAGCTGATGGAACGCGCCTGGCACG
CCGACCCCGCTCAACGAATGTCTTTCAAGGACATGGCATCGGCCTGGGAC
CGcctcgaggacgaggaagtgctGCCAGCGCATGACGCAATGCACGGGGA
ATGCGTACTACCTGGCGCCAGAGGTCTTTCGAGGCCAGCAATACACCGAA
AAGGCAGACTGCTACTCCTACGGCATTCTTCTGTGGGAGCTTTTCACCCG
CAAGTACCCCTTTGCCACACTCAACCCTCGCTCCGCGGCCTTTCAACAAG
CAGAAGGCTTGCGTCCCCCCCTTGCCGAGGTCGAGGCCCAACCCCCTGCG
GTCCTGGAGCTGATGGAACGCGCCTGGCACGCCGACCCCGCTCAACGAAT
GTCTTTCAAGGACATGGCATCGGCCTGGGACCGcctcgaggacgaggaag
tgctGCCAGCGCATGACGCAATGCACGGGGAATGCGTACTACCTGGCGCC
AGAGGTCTTTCGAGGCCAGCAATACACCGAAAAGGCAGACTGCTACTCCT
ACGGCATTCTTCTGTGGGAGCTTTTCACCCGCAAGTACCCCTTTGCCACA
CTCAACCCTCGCTCCGCGGCCTTTCAACAAGCAGAAGGCTTGCGTCCCCC
CCTTGCCGAGGTCGAGGCCCAACCCCCTGCGGTCCTGGAGCTGATGGAAC
GCGCCTGGCACGCCGACCCCGCTCAACGAATGTCTTTCAAGGACATGGCA
TCGGCCTGGGACCGcctcgaggacgaggaagtgctGCCAGCGCATGACGC
AATGCACGGGGAATGCGTACTACCTGGCGCCAGAGGTCTTTCGAGGCCAG
CAATACACCGAAAAGGCAGACTGCTACTCCTACGGCATTCTTCTGTGGGA
GCTTTTCACCCGCAAGTACCCCTTTGCCACACTCAACCCTCGCTCCGCGG
CCTTTCAACAAGCAGAAGGCTTGCGTCCCCCCCTTGCCGAGGTCGAGGCC
CAACCCCCTGCGGTCCTGGAGCTGATGGAACGCGCCTGGCACGCCGACCC
CGCTCAACGAATGTCTTTCAAGGACATGGCATCGGCCTGGGACCGcctcg
aggacgaggaagtgctGCCAGCGC
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Synonyms
Publications