rna4180, rna4180 (mRNA) Nannochloropsis gaditana

Overview
Namerna4180
Unique Namerna4180
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1160
Alignment locationCM002462.1:1046888..1048086 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101144g2.9571.mrna
Orig protein idgnl|cribi|Naga_101144g2.9571
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1046888..1048086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101144g2gene4023Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4180rna4180-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26503.1cds4170Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4180 ID=rna4180|Name=rna4180|organism=Nannochloropsis gaditana|type=mRNA|length=1160bp
TTTCAGGCACTGCCTCATTACATTAAGGACAAAACAAACGAGCAGAGTTC
CCTTTCCCTTTGTTAGGTCGCAAATGGCGAAAGAACCCATGATACGAGAC
AATCAGGAAAGCACCCAACACTGTATCCCGGCGTCGCTGCGTTGCTGCGT
TCGACACAGGAAGGGTGTTTTACCTTCGGCATCCGCTATTCTCCACGCGA
GAGTCGAGATGCCATGATCTCGCCTAAACGTTACGCGTCATATTTCCCCG
GGACCATAGCCTCCCCGCAGCATTGCCAACCCCCCTCTTCCCTCCCTCCT
CCGCCCCTCTTCCTCCTCCCCTGCCTCCCCCCTCCCTTCCTCAAGAGAAC
AAGGTTCTCCGTTCCCCTCCGTCGGGGGCACGCAGACGCACAACCAGGGC
GGTGATGTTGTCCCGCGAGCCCCGTCGCATGCTCTCCTTTACAATGTCGT
CCGCCAACTCCACCAAGTACGTCGGCTGTGGACCGGACGGAGAATGAAGC
CGAAAAAAACCGAAGGGGTGAGGCCATACACCGGCAAACCGCCGGATGTT
GTCCGATTTACAGGTAGGCGCCATTGTTCACTTTCCTCAACAATCCATCC
TTTGTCAGTGTACACGCACGTCTCTCCCCCCTTTTACCCTCCTCCTCGGG
CCTTACCTTCCTCGTTCCCTCCCTCGCCATCGTCCCGTGCTCGTCCACGT
AGGCGGCCATCGCCTCGTTGCTGAACACGTCCCACACCCCGTCGCACGCG
ATGACGAGGAACTCATCCAGCGCACTACGGGGGTGGATGTGCACGTCGGG
GAGGGGGATGATCTGGGGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAA
GGGTGGGTGCGTCGTGAAGCGCTAGCGTCTCCCGTTTAGGCAAAGGAGGA
GAGGTAACAGGACGCGGAAAGAGCAACTCTCCCCTTGATCAATGATTCAA
CCCAGACGAGGGCGTGTAGATGAAAAAGGAGGGGTCGAACGGGTCTGTTG
GCATTCTTCAGGAGGCCGCTCTTCGCAATGCCTCCCGCCGCTCCCTCCCT
CCCTCCCCCCTACCATCTGATCCTCCACACCCCGGTGGGGCTGTCGCTTG
TAGGCAAAGTCCCCAAGGGCCCGCGTCATGGCCAGGGAGTCCCCCCGGTC
CTTGTCGAGG
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protein sequence of rna4180

>rna4180-protein ID=rna4180-protein|Name=rna4180|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MLPSSTTTSSSGKYEDRIGNDTETSSTRELTIQNSNSSNSLDQTTSRLSS
PSASTSSSVSGASLGWKLDWEHRYGVATVDLGLALPLVFPSPSPAPPAHD
ARAEAIADDQEEDDRGMEDPETTPPVQTLACRP
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mRNA from alignment at CM002462.1:1046888..1048086+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4180 ID=rna4180|Name=rna4180|organism=Nannochloropsis gaditana|type=mRNA|length=1199bp|location=Sequence derived from alignment at CM002462.1:1046888..1048086+ (Nannochloropsis gaditana)
ATGCTGCCCTCCAgtaccaccacctcctcctctgggaAGTACGAGGACCG
AATCGGAAATGACACCGAAACCAGCTCAACGCGCGAGCTAACGATCCAAA
ACAGCAATAGTAGCAACAGCCTGGACCAGACGACCTCAAgactctcctct
ccctcggcttctacctcttcctccgtctcagGCGCTAGTCTGGGATGGAA
GCTGGATTGGGAGCACAGGTATGACCGACCACGTCCGCCAACTGCTCCGT
TGGAAATGCACATGTTTGATTGGGTGCTGTGTGAAAGCCTCCGTTCAAGT
TTTTAGTTGGAAGAATGCCATCCTTGTGCCCTTTCACCTCCAAAGCCCCC
ACTCAAGACTCCCTGCGCTGGACCGTGCCCGTCGGTGGGTCTATAGACCG
TCCTTTTCTTTGCATGACATTTTTCtgtactcctccttccacaaaCCATA
CATTCATGCCAGATATGGAGTCGCGACGGTCGATCTTGGcctggcccttc
ctcttgtgtttccttccccctcccccgccccgcccgcccacgATGCTCGA
GCCGAGGCCATTGCGGATGAccaagaggaagatgacagagggatggaaga
ccCAGAAACGACGCCGCCTGTGCAAACACTGTTCGACGCAGGGCCGTCCA
GTATGGAAAACGGCGCGACATCGgccggaaaagaaaaggattGCACGCAA
CCCCCTTTCCTGCGCAGCGAGACCAAAGGGACGATGGGCTGGACcgcgga
ggggggcgtgGCGTCTGCCCGCCCGGGGGAGAGCGACTGGCTATCCGAGG
GCCCCGACCGACCGACTCTTTTACCTCGTTCAtccttgcctctttccctt
ggGGGGGGTGAAGGGCCCAGGCAGGCACCCCCCCATGGGAGTCAAGAAAG
GCTGCACCGTCCTGCGCAGGGActggtggaaggggagacgctggcaggag
aagagattggggaggaagggagggtgaagTGGCatggggtggaggagggg
cggttTCCTGACTCCGGAAGGCCGGGGGAgaaggtcggggaggagggcga
gggcgaggaggagggcgagggcgaggaagggggatgggcACCGGCAGCCA
ACGTACGGGAAAGCGCCGGAATCCCCGCCTCCTTacgctcttccctccct
ccctcaacacccctgtccttcccttcctcggagCGCTTGCCGTCCCTGA
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Coding sequence (CDS) from alignment at CM002462.1:1046888..1048086+

>rna4180 ID=rna4180|Name=rna4180|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002462.1:1046888..1048086+ (Nannochloropsis gaditana)
ATGCTGCCCTCCAgtaccaccacctcctcctctgggaAGTACGAGGACCG
AATCGGAAATGACACCGAAACCAGCTCAACGCGCGAGCTAACGATCCAAA
ACAGCAATAGTAGCAACAGCCTGGACCAGACGACCTCAAgactctcctct
ccctcggcttctacctcttcctccgtctcagGCGCTAGTCTGGGATGGAA
GCTGGATTGGGAGCACAGATATGGAGTCGCGACGGTCGATCTTGGcctgg
cccttcctcttgtgtttccttccccctcccccgccccgcccgcccacgAT
GCTCGAGCCGAGGCCATTGCGGATGAccaagaggaagatgacagagggat
ggaagaccCAGAAACGACGCCGCCTGTGCAAACACTCGCTTGCCGTCCCT
GAATGCTGCCCTCCAgtaccaccacctcctcctctgggaAGTACGAGGAC
CGAATCGGAAATGACACCGAAACCAGCTCAACGCGCGAGCTAACGATCCA
AAACAGCAATAGTAGCAACAGCCTGGACCAGACGACCTCAAgactctcct
ctccctcggcttctacctcttcctccgtctcagGCGCTAGTCTGGGATGG
AAGCTGGATTGGGAGCACAGATATGGAGTCGCGACGGTCGATCTTGGcct
ggcccttcctcttgtgtttccttccccctcccccgccccgcccgcccacg
ATGCTCGAGCCGAGGCCATTGCGGATGAccaagaggaagatgacagaggg
atggaagaccCAGAAACGACGCCGCCTGTGCAAACACTCGCTTGCCGTCC
CTGAATGCTGCCCTCCAgtaccaccacctcctcctctgggaAGTACGAGG
ACCGAATCGGAAATGACACCGAAACCAGCTCAACGCGCGAGCTAACGATC
CAAAACAGCAATAGTAGCAACAGCCTGGACCAGACGACCTCAAgactctc
ctctccctcggcttctacctcttcctccgtctcagGCGCTAGTCTGGGAT
GGAAGCTGGATTGGGAGCACAGATATGGAGTCGCGACGGTCGATCTTGGc
ctggcccttcctcttgtgtttccttccccctcccccgccccgcccgccca
cgATGCTCGAGCCGAGGCCATTGCGGATGAccaagaggaagatgacagag
ggatggaagaccCAGAAACGACGCCGCCTGTGCAAACACTCGCTTGCCGT
CCCTGA
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Synonyms
Publications