EWM26503.1, cds4170 (CDS) Nannochloropsis gaditana

Overview
NameEWM26503.1
Unique Namecds4170
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1046888..1047105 +
Alignment locationCM002462.1:1047350..1047517 +
Alignment locationCM002462.1:1048071..1048086 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26503.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101144g2.9571.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1046888..1047105 +
CM002462.1supercontigCM002462.1:1047350..1047517 +
CM002462.1supercontigCM002462.1:1048071..1048086 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM26503.1 vs. NCBI_GenBank
Match: gi|585108568|gb|EWM26503.1| (hypothetical protein Naga_101144g2 [Nannochloropsis gaditana])

HSP 1 Score: 266.159 bits (679), Expect = 4.212e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 MLPSSTTTSSSGKYEDRIGNDTETSSTRELTIQNSNSSNSLDQTTSRLSSPSASTSSSVSGASLGWKLDWEHRYGVATVDLGLALPLVFPSPSPAPPAHDARAEAIADDQEEDDRGMEDPETTPPVQTLACRP 133
            MLPSSTTTSSSGKYEDRIGNDTETSSTRELTIQNSNSSNSLDQTTSRLSSPSASTSSSVSGASLGWKLDWEHRYGVATVDLGLALPLVFPSPSPAPPAHDARAEAIADDQEEDDRGMEDPETTPPVQTLACRP
Sbjct:    1 MLPSSTTTSSSGKYEDRIGNDTETSSTRELTIQNSNSSNSLDQTTSRLSSPSASTSSSVSGASLGWKLDWEHRYGVATVDLGLALPLVFPSPSPAPPAHDARAEAIADDQEEDDRGMEDPETTPPVQTLACRP 133
[Close]
BLAST of EWM26503.1 vs. NCBI_GenBank
Match: gi|553183109|ref|XP_005853841.1| (hypothetical protein NGA_0439700, partial [Nannochloropsis gaditana CCMP526] >gi|422295221|gb|EKU22520.1| hypothetical protein NGA_0439700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 197.978 bits (502), Expect = 2.822e-63
Identity = 106/129 (82.17%), Postives = 106/129 (82.17%), Query Frame = 0 
Query:    1 MLPSSTTTSSSGKYEDRIGNDTETSSTRELTIQNSNSSNSLDQTTSRLSSPSASTSSSVSGASLGWKLDWEHRYGVATVDLGLALPLVFPSPSPAPPAHDARAEAIADDQEEDDRGMEDPETTPPVQTL 129
            MLPSSTTTSSSG                       NSSNSLDQTTSRLSSPSASTSSSVSGASLGWKLDWEHRYGVATVDLGLALPLVFPSPSPAPPAHDARAEAIADDQEEDDRGMEDPETTPPVQTL
Sbjct:    1 MLPSSTTTSSSGN----------------------NSSNSLDQTTSRLSSPSASTSSSVSGASLGWKLDWEHRYGVATVDLGLALPLVFPSPSPAPPAHDARAEAIADDQEEDDRGMEDPETTPPVQTL 107
The following BLAST results are available for this feature:
BLAST of EWM26503.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108568|gb|EWM26503.1|4.212e-90100.00hypothetical protein Naga_101144g2 [Nannochloropsi... [more]
gi|553183109|ref|XP_005853841.1|2.822e-6382.17hypothetical protein NGA_0439700, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4180rna4180Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications