rna4176, rna4176 (mRNA) Nannochloropsis gaditana

Overview
Namerna4176
Unique Namerna4176
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length778
Alignment locationCM002462.1:1042250..1043301 +

Link to JBrowse

Properties
Property NameValue
Productascorbate peroxidase
Orig transcript idgnl|cribi|Naga_101335g1.6839.mrna
Orig protein idgnl|cribi|Naga_101335g1.6839
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1042250..1043301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101335g1gene4019Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4176rna4176-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26506.1cds4166Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4176 ID=rna4176|Name=rna4176|organism=Nannochloropsis gaditana|type=mRNA|length=778bp
CCGTGTACAGGGACAAGACATTGCTCAGCGGGCACGACTGTACGCAGGGA
AGTAACAGTGACCAATGGCGCGAATGAAGCAGCACCAGCTTCGACACCAC
CACGTTCTACGTGCCGCATGTCTGCTGCTGCTTGTTTCGATTACGGGCAT
TGCTGCATTCAAACTACCTTACAGTCATAGCAATTTTGTCCAAAATCACA
TGCAAGGCCGTAAAGGGAGGGTCTTTATGAATCAAGCATCAGATGACTGC
GACCGCAGGAGCCTTTTGAGCGCAGGCGCCGTCCTATCCTCCTTTTTTGC
CCTTTCCCTCTCTTCGACCCCTCCCGCCAGGGCCTCCGTGGCCTTTGATC
CGGACCGCTACGGCGACAAGGAGTTGAAGATCGCCACCGTGAACAAGCTG
AAGCAGAAACTCCGTAACGCCATTGCGGGCGATTTGTCGCTGGCTGTTTC
CTTTGTGCGGCTGGCGATCAACGACGGTATCGGCTATGATGCCGCCACGA
ACGAGGGAGGCCCAGACGGCTCCATCGCCTTCGAGATGGACAGGGATCAG
AACGCGGGGCTCAAACCGGCGCTAGAGACGCTCTTGAAGGTGAAGAGGGA
GATCCAAAGCACGAACGAGGTCACCTTTGGGGATGTGTGTGCCTTTGCGG
GCGCCGTGGCTATTGAGAGTACGGGCGGCCCCCGGATCCCAGTCCAGCTC
GGAAGGTAAGAAGGAGCGGGAAAGGAAGGGAGGGGGGGACCCTGTGTGGG
GAGTTCGGGGGCGGAGGTGCTAGAGACG
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protein sequence of rna4176

>rna4176-protein ID=rna4176-protein|Name=rna4176|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
MPLPSLRTDSGAPNKNNVGASGYAWNSMSGDGLLQTFTKAGFGAREAVLL
YGAMGAVYLATKDAGKTAGEVDADIDDDGEIEAFIPNTFGKQSDIYGAQL
GNRKFDASYLAQIAKGQTVGLGSVDKALADPQLKTFVGKYAGNNNAFLKD
LNECYLKLTTLGYQGTKRND
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mRNA from alignment at CM002462.1:1042250..1043301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4176 ID=rna4176|Name=rna4176|organism=Nannochloropsis gaditana|type=mRNA|length=1052bp|location=Sequence derived from alignment at CM002462.1:1042250..1043301+ (Nannochloropsis gaditana)
GAGAATCTTTTCTTTATCCCGGCTTCTTTCCTGTCCATCACGCTCCTTGC
CACCTGGCAtgcctttgccctccctcaggacCGACTCGGGCGCCCCCAAC
AAGAACAACGTGGGCGCCTCCGGGTATGCGTGGAACAGCATGAGCGGCGA
CGGCCTTCTCCAGACCTTCACCAAGGCTGGCTTCGGGGCCAGgtggggtg
ggcggggagggtgatGCTGCTCGATTCTAGGTTGTAGGGGGATATGCCCT
TCTAGtgaggcagggaggatccACGGGGGTGCCGGTCCTGGTCTTGTCTC
CACCGCCctgattccctccctccctttctccctccctcactccctaTGCC
GGGCTTGCCCACCGTCTTGCAGGGAGGCTGTTCTCCTGTACGGCGCGATG
GGGGCCGTGTATTTGGCGACAAAAGACGCGGGAAAGACCGCGGGCGAGGT
GGACGCCGACATCGACGACGACGGTGAAATCGAAGCCTTCATCCCCAACA
CCTTTGGGAAGCAAAGCGATATTTACGGTGCTCAGCTCGGAAATAGGAAG
TTTGATGCCAGTTATTTGGCCCAGATTGCCAAGGGGCAGACGGTCGGTTT
GGGCTCTGTGGAcaaggccttggcggacCCGCAACTCAAGACCTTTGTGG
GGAAATATGCCGGGAATAACAACGCCTTTCTGAAGGACTTGAACGAATGC
TACCTGAAACTGACAACGTTGGGGTACCAAGGGACCAAGAGGAACGATTA
GGGTAAGAACTGGACTAGTCGatggcaggcgggagggcccGCACCGAGTG
CAAGGGCCTGTGTGATGCGGGCCGGTCAGAGAGAGGCTCTGGCGCCCCGA
AAAGTGCTTTGTTTTCACATTGTAGGACATCCCTCATGGAGGggagaaat
gaaagaaaaaagtcAGAGCTAAGTGGAAACGGGTCTAAAGCGTAGGCCGT
GAATTTGGTTTTTAAGATAGAAGTCGCCGTCGACGGTAGACTGCCAGCTG
CCTTCGTTGCTCGATCCCTGTCAAAGGATCTTAAAAGCccggaaagaaaa
gg
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Coding sequence (CDS) from alignment at CM002462.1:1042250..1043301+

>rna4176 ID=rna4176|Name=rna4176|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002462.1:1042250..1043301+ (Nannochloropsis gaditana)
AtgcctttgccctccctcaggacCGACTCGGGCGCCCCCAACAAGAACAA
CGTGGGCGCCTCCGGGTATGCGTGGAACAGCATGAGCGGCGACGGCCTTC
TCCAGACCTTCACCAAGGCTGGCTTCGGGGCCAGGGAGGCTGTTCTCCTG
TACGGCGCGATGGGGGCCGTGTATTTGGCGACAAAAGACGCGGGAAAGAC
CGCGGGCGAGGTGGACGCCGACATCGACGACGACGGTGAAATCGAAGCCT
TCATCCCCAACACCTTTGGGAAGCAAAGCGATATTTACGGTGCTCAGCTC
GGAAATAGGAAGTTTGATGCCAGTTATTTGGCCCAGATTGCCAAGGGGCA
GACGGTCGGTTTGGGCTCTGTGGAcaaggccttggcggacCCGCAACTCA
AGACCTTTGTGGGGAAATATGCCGGGAATAACAACGCCTTTCTGAAGGAC
TTGAACGAATGCTACCTGAAACTGACAACGTTGGGGTACCAAGGGACCAA
GAGGAACGATTAGAtgcctttgccctccctcaggacCGACTCGGGCGCCC
CCAACAAGAACAACGTGGGCGCCTCCGGGTATGCGTGGAACAGCATGAGC
GGCGACGGCCTTCTCCAGACCTTCACCAAGGCTGGCTTCGGGGCCAGGGA
GGCTGTTCTCCTGTACGGCGCGATGGGGGCCGTGTATTTGGCGACAAAAG
ACGCGGGAAAGACCGCGGGCGAGGTGGACGCCGACATCGACGACGACGGT
GAAATCGAAGCCTTCATCCCCAACACCTTTGGGAAGCAAAGCGATATTTA
CGGTGCTCAGCTCGGAAATAGGAAGTTTGATGCCAGTTATTTGGCCCAGA
TTGCCAAGGGGCAGACGGTCGGTTTGGGCTCTGTGGAcaaggccttggcg
gacCCGCAACTCAAGACCTTTGTGGGGAAATATGCCGGGAATAACAACGC
CTTTCTGAAGGACTTGAACGAATGCTACCTGAAACTGACAACGTTGGGGT
ACCAAGGGACCAAGAGGAACGATTAG
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Synonyms
Publications