EWM26506.1, cds4166 (CDS) Nannochloropsis gaditana

Overview
NameEWM26506.1
Unique Namecds4166
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1042308..1042441 +
Alignment locationCM002462.1:1042622..1043000 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26506.1
Productascorbate peroxidase
Orig transcript idgnl|cribi|Naga_101335g1.6839.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1042308..1042441 +
CM002462.1supercontigCM002462.1:1042622..1043000 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
GO:0008152metabolic process
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0004601peroxidase activity
GO:0020037heme binding
Vocabulary: INTERPRO
TermDefinition
IPR010255Haem_peroxidase
IPR002016Haem_peroxidase_pln/fun/bac
Homology
BLAST of EWM26506.1 vs. NCBI_GenBank
Match: gi|585108572|gb|EWM26506.1| (ascorbate peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 343.199 bits (879), Expect = 2.199e-119
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
Query:    1 MPLPSLRTDSGAPNKNNVGASGYAWNSMSGDGLLQTFTKAGFGAREAVLLYGAMGAVYLATKDAGKTAGEVDADIDDDGEIEAFIPNTFGKQSDIYGAQLGNRKFDASYLAQIAKGQTVGLGSVDKALADPQLKTFVGKYAGNNNAFLKDLNECYLKLTTLGYQGTKRND 170
            MPLPSLRTDSGAPNKNNVGASGYAWNSMSGDGLLQTFTKAGFGAREAVLLYGAMGAVYLATKDAGKTAGEVDADIDDDGEIEAFIPNTFGKQSDIYGAQLGNRKFDASYLAQIAKGQTVGLGSVDKALADPQLKTFVGKYAGNNNAFLKDLNECYLKLTTLGYQGTKRND
Sbjct:    1 MPLPSLRTDSGAPNKNNVGASGYAWNSMSGDGLLQTFTKAGFGAREAVLLYGAMGAVYLATKDAGKTAGEVDADIDDDGEIEAFIPNTFGKQSDIYGAQLGNRKFDASYLAQIAKGQTVGLGSVDKALADPQLKTFVGKYAGNNNAFLKDLNECYLKLTTLGYQGTKRND 170          
BLAST of EWM26506.1 vs. NCBI_GenBank
Match: gi|553183106|ref|XP_005853840.1| (ascorbate peroxidase [Nannochloropsis gaditana CCMP526] >gi|422295220|gb|EKU22519.1| ascorbate peroxidase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.728 bits (600), Expect = 1.094e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:   54 MGAVYLATKDAGKTAGEVDADIDDDGEIEAFIPNTFGKQSDIYGAQLGNRKFDASYLAQIAKGQTVGLGSVDKALADPQLKTFVGKYAGNNNAFLKDLNECYLKLTTLGYQGTKRND 170
            MGAVYLATKDAGKTAGEVDADIDDDGEIEAFIPNTFGKQSDIYGAQLGNRKFDASYLAQIAKGQTVGLGSVDKALADPQLKTFVGKYAGNNNAFLKDLNECYLKLTTLGYQGTKRND
Sbjct:    1 MGAVYLATKDAGKTAGEVDADIDDDGEIEAFIPNTFGKQSDIYGAQLGNRKFDASYLAQIAKGQTVGLGSVDKALADPQLKTFVGKYAGNNNAFLKDLNECYLKLTTLGYQGTKRND 117          
BLAST of EWM26506.1 vs. NCBI_GenBank
Match: gi|299116878|emb|CBN74988.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-20
Identity = 65/151 (43.05%), Postives = 89/151 (58.94%), Query Frame = 0
Query:   22 GYAWNSMSGDGLLQTFTKAGFGAREAVLLYGAMGAVYLATKDAGKTAGEVDADIDDDGEIEAFIPNTFGKQSDIYGAQLGNRKFDASYLAQIAKGQTV--GLGSVDKA-LADPQLKTFVGKYAGNNNAFLKDLNECYLKLTTLGYQGTKRN 169
            GY+++  +G G+   F +AG G RE VLL GA+G+V  A    G   G+ D D  +D   +  IPNTFGK+SD  G  L N  F   +L ++A       G+G V KA L D ++KT+V KYAGN+ AF+ DL+E Y K+T LG +   RN
Sbjct:  229 GYSFDEPTGAGVKAAFKRAGLGPREMVLLLGALGSVSDAASAVGNGGGDGDDDDLEDLAWQNSIPNTFGKESDKLGRPLSN-SFGPGFLQRVAAAGKDGGGIGVVGKALLEDDEVKTYVRKYAGNSKAFMSDLSEAYTKMTLLGERYETRN 378          
BLAST of EWM26506.1 vs. NCBI_GenBank
Match: gi|551657576|ref|XP_005831559.1| (hypothetical protein GUITHDRAFT_152902 [Guillardia theta CCMP2712] >gi|428175691|gb|EKX44579.1| hypothetical protein GUITHDRAFT_152902 [Guillardia theta CCMP2712])

HSP 1 Score: 63.5438 bits (153), Expect = 9.702e-9
Identity = 56/188 (29.79%), Postives = 93/188 (49.47%), Query Frame = 0
Query:   11 GAPNKNNVGASGYAWNSMSGDGLLQTFTKAGFGAREAVLLYGAMGAVYLATKDAGK-TAGEVDADIDD-------DGEIEAFIPNTFGKQ-SDIYGAQLG------NRKFDASYLAQIAKGQT--------VGLGSVDKALA-----DPQLKTFVGKY--AGNNNAFLKDLNECYLKLTTLGYQGTKR 168
            G P+  + G S + +++ + +G+L   +K+G  A+EAVLL GA+G++  A+ +  +  A +V  D++D       +G    + P T   + S++YG   G      N  FD++ +A +A               G  D  LA     D ++  +V +Y   GNNN F+KD  +CY+ LT LG   T R
Sbjct:  208 GKPSSKS-GMSSWDFSAPTAEGILGAMSKSGLTAKEAVLLAGAIGSLNQASLNMKEAIANKVVCDVEDPSCTSEEEGYYGLYSPVTIRSETSNLYGKNRGASAVNSNTGFDSARIAGLAGDAKFSNKFLIDAASGKSDDPLAKALMSDKEMSKWVMEYGKKGNNNKFVKDCEKCYVALTELGRSNTSR 394          
The following BLAST results are available for this feature:
BLAST of EWM26506.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585108572|gb|EWM26506.1|2.199e-119100.00ascorbate peroxidase [Nannochloropsis gaditana][more]
gi|553183106|ref|XP_005853840.1|1.094e-77100.00ascorbate peroxidase [Nannochloropsis gaditana CCM... [more]
gi|299116878|emb|CBN74988.1|3.614e-2043.05conserved unknown protein [Ectocarpus siliculosus][more]
gi|551657576|ref|XP_005831559.1|9.702e-929.79hypothetical protein GUITHDRAFT_152902 [Guillardia... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4176rna4176Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications