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Properties
| Property Name | Value |
|---|
| Product | lysosomal alpha |
| Orig transcript id | gnl|cribi|Naga_101290g1.10523.mrna |
| Orig protein id | gnl|cribi|Naga_101290g1.10523 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:1036634..1039225 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4172 ID=rna4172|Name=rna4172|organism=Nannochloropsis gaditana|type=mRNA|length=382bp
TTCCTTCCTCCCTCCCTCCCCTCCCTCCCTCCCTTCTCCGAACTTTTGAT
CCCTCCCGCTCATCCCGCCCGCCCTCCCGCCCGCCCTCCTTCCCGCCCTC
CCTCCCGCCCTTTCCAAGCGGTCTTCACGGGGGTCTTCCCCTCCGGAAAC
TACGGCCCTCCTCCAGGCTTCTGCTTCGACCAATTCTGCGCCGATGCGCC
CATCAATGACAATCCTTCCCTGACCGACGAGAACGTGCAGGTGCTCCCTC
CTTCAATCCCTCCTTCCCTTCCTCCCTTCTCCCTCCCTTCCTTTCCTCCT
TCCTCCCTCTTGGACCGAAACTTCGGGGCAACGTGGGGCGTCTGAGGAAG
AACTTCTCTTCTGCCTTTCCTATTCCCTCTCC back to topprotein sequence of rna4172 >rna4172-protein ID=rna4172-protein|Name=rna4172|organism=Nannochloropsis gaditana|type=polypeptide|length=506bp
LPPDPSKLESLGVADVPTLPGCPRPGGGVGAGARPCRRRRGQGGGSAARI
GPAERRHPVDRRQRPGIPREKAEPSRHVERLARRAGRGKLLPSHHCRLPG
GRRGRREGGREGRKGASSAIIGGFGPLRGTWLGEKGNGPCSLRQPCAGIE
MGRQKVFMHKGLCDSQAGRVIRPPCLGWRSTRPANDSFRRGCRRPCPAII
IPLPSFPPSLPPSLPQGVASLASGQLDLLLQRRLLFDDRRGVNEPLNETV
GGIEHGGDWARRGEGVRVRGKHTLMLGAAGREGMRELRVQMDEAFFPASL
FFSTQADLLASPSLAASPSPSPSAPPSRLSFLPSELPPSLALLTLQYIHP
RERWTTRTDSREGGEEGGGEDGCAPRFLLRLAHQFAVDEDPEELSQPVTV
DLASLFPRYALLSSTELTLSAGQPKSELQRLSWKTTEGAFMGGREGGHGG
GQVVTLGPMEIRTFEVVLGMKVEGKKEVGGQGGGEGRKEGGRGRWRAGPA
GLLATM back to topmRNA from alignment at CM002462.1:1036634..1039225+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4172 ID=rna4172|Name=rna4172|organism=Nannochloropsis gaditana|type=mRNA|length=2592bp|location=Sequence derived from alignment at CM002462.1:1036634..1039225+ (Nannochloropsis gaditana)
TTGCCTCCAGATCCATCAAAGCTGGAGTCCCTGGGCGTCGCTGACGTCCC
GACTCTACCGGGATGCCCGCGTCCTGGAGGTGGAGTGGGAGCTGGGGCCC
GTCCCTGTCGACGACggcgtgggcaaggaggtggtTCTGCGGCTCGGATC
GGACCTGCGGAGCGAAGGCACCCTGTGGACCGACGCCAACGGCCGGGAAT
TCCAAGAGAGAAAGCTGTGCGTTctccctgcttttccttgtgcttctttt
ttcttttttcttttcattATGTTTTCCTGAACTCGAATTCTTTTTGTCTA
GTGTGCCGCTTTGTCAGTTGTTCGTCCCGaacgccctcccttcccttcct
ccttccttccctccttctttccctccctcaggaacCATCGCGCCACGTGG
AACGTCTCGCTCGACGAGCCGGTCGCGGGAAATTACTACCCAGCCACCAT
TGCCGCTTACctggaggacggagagggaggcgggaaggagggcgggaagg
aaggaaaggcgcTTCGTCGGCAATTATCGGTGGTTTTGGACCGCTCCGAG
GTACGTGGctcggggagaaagggaacgGCCCATGTTCCCTGCGGCAGCCG
TGCGCGGGGATTGAGATGGGCCGTCAGAAGGTCTTTATGCACAAGGGCTT
GTGTGATAgtcaggcggggagggtcattcgtcctccttgcctcggGTGGC
GCTCGACGCGGCCGGCAAATGATTCTTTTAGGCGTGGGTGTCGCCGTCCT
TGCCCAGCGATCATCattcccctgccctccttccctccctccctccctcc
ctccctccctcagggagtcgcctccctggcctcggGCCAGCTCGACCTCC
TCTTGCAACGGCGCCTTCTCTTCGACGACCGGCGAGGCGTCAACGAGCCG
TTAAATGAAACGGTCGGGGGCATCGAGCACGGGGGAGACTGGGCCcgacg
gggggagggtgtccgggtgagagggaagcaCACGTTGATGCTCggagcgg
cagggagggagggaatgagggagcTGCGCGTGCAGATGGACGAGGCTTTC
TTtccaggtagggagggagggaagagagggaggaagggagggagggaggg
agggcaagagaaCGAATGGGGCTggccaagaggaaggggaacgttCGACT
GACGTTTTTGGGCGCCGtctctgcttccctcctcgccctccagcctccct
cttcttctccacgcAGGCCGACCTCctggcctcgccctccctcgccgcct
ccccctccccctccccctctgcccctccttcccgtctctcCTTTTTGCCC
AGcgagctccctccctcccttgccctcctcaccctgcaATACATCCACCC
ACGGGAGCGATGGACCACTCGCACTGACAgccgcgagggaggggaggagg
gggggggggaggacggctgtGCTCCTcggttcctcctccgccttgcccaC
CAGTTCGCTGTCGATGAGGATCCCGAGGAGCTCTCTCAACCTGTGACAGT
GGACTTGGCCAGGTAGGAAatgaagggtgggagggagggagggagggagg
gagggagggagggtcggacTGCAATatcggggaggagagcacccatctct
tcctccttttctccttcttctagCCTCTTCCCACGGTATGcactcctttc
ctccacggaGCTCACCCTCTCGGCGGGGCAGCCCAAGAGCGAACTGCAAC
GTCTGAGCTGGAAGACGACCGAGGGCGCTTTcatgggagggcgggaggga
gggcatgggggagggcaggtggtGACGTTGGGCCCGATGGAGATCCGCAC
TTTCGAGGTGGTACTGGGGATGaaagtggaagggaagaaggaggtagggg
ggcagggagggggggagggaaggaaggagggagggaggggacgatggCGG
GCAGGACCTGCGGGTCTTTTGGCGACGATGTAGGCAGGATTCTAGAAGGT
tctggggaagggaggaggcccaGGCATGACAAGGGGGCCACGAGGACGGG
CTCCTTCGTGTGTtcaaggggaaagacggaagaaagggaggaagggggag
ggtgtggtGCCGGGGTGGTGCCGTAGAAGACTCTGCCCGgtgcatgggga
ggaggcaggggcagggagagggcgagggggccgTCACCCGTGACAGCGCG
GAAGACTGGCAGCGGAAAGGGTTCAGATGGCACGGATGGTGAAGCTCGGA
AATGGCTGGTATGAATGGGAAGtgtgggggggcggggggcgggcaaAGAC
AAGGACTTGCTTTGTGCTCGGGCGCATGCTCAAGAGGTGGTTGGAGGGGC
ACGGTGCCGTGCCAAGAAAGATCGATACTTTCGGACTGAGAGAGACCTTT
CCGTATGACCGAAAATGTGGAGAGAGCCCGGGCTCCGAGGGTACCGTGgt
agaaagaaaggaggctAGGGTTGGACTGGATGATGCTGTCGCCATGCCGG
AGGTGGTAGGGcgcatcccccctcccccggcactTGGGTTGCTCTTTGGC
TTGAGCGTTATCGTGTCAATCTCCTTTCTGCCCCATGTGAAGCGTGTCCG
TGTTTTCTTTTACATGCAAACTGTGTACAATCTATTCGCTCC back to topCoding sequence (CDS) from alignment at CM002462.1:1036634..1039225+ >rna4172 ID=rna4172|Name=rna4172|organism=Nannochloropsis gaditana|type=CDS|length=6084bp|location=Sequence derived from alignment at CM002462.1:1036634..1039225+ (Nannochloropsis gaditana)
TTGCCTCCAGATCCATCAAAGCTGGAGTCCCTGGGCGTCGCTGACGTCCC
GACTCTACCGGGATGCCCGCGTCCTGGAGGTGGAGTGGGAGCTGGGGCCC
GTCCCTGTCGACGACggcgtgggcaaggaggtggtTCTGCGGCTCGGATC
GGACCTGCGGAGCGAAGGCACCCTGTGGACCGACGCCAACGGCCGGGAAT
TCCAAGAGAGAAAGCTgaacCATCGCGCCACGTGGAACGTCTCGCTCGAC
GAGCCGGTCGCGGGAAATTACTACCCAGCCACCATTGCCGCTTACctgga
ggacggagagggaggcgggaaggagggcgggaaggaaggaaaggcgcTTC
GTCGGCAATTATCGGTGGTTTTGGACCGCTCCGAGGTACGTGGctcgggg
agaaagggaacgGCCCATGTTCCCTGCGGCAGCCGTGCGCGGGGATTGAG
ATGGGCCGTCAGAAGGTCTTTATGCACAAGGGCTTGTGTGATAgtcaggc
ggggagggtcattcgtcctccttgcctcggGTGGCGCTCGACGCGGCCGG
CAAATGATTCTTTTAGGCGTGGGTGTCGCCGTCCTTGCCCAGCGATCATC
attcccctgccctccttccctccctccctccctccctccctccctcaggg
agtcgcctccctggcctcggGCCAGCTCGACCTCCTCTTGCAACGGCGCC
TTCTCTTCGACGACCGGCGAGGCGTCAACGAGCCGTTAAATGAAACGGTC
GGGGGCATCGAGCACGGGGGAGACTGGGCCcgacggggggagggtgtccg
ggtgagagggaagcaCACGTTGATGCTCggagcggcagggagggagggaa
tgagggagcTGCGCGTGCAGATGGACGAGGCTTTCTTtccagcctccctc
ttcttctccacgcAGGCCGACCTCctggcctcgccctccctcgccgcctc
cccctccccctccccctctgcccctccttcccgtctctcCTTTTTGCCCA
GcgagctccctccctcccttgccctcctcaccctgcaATACATCCACCCA
CGGGAGCGATGGACCACTCGCACTGACAgccgcgagggaggggaggaggg
ggggggggaggacggctgtGCTCCTcggttcctcctccgccttgcccaCC
AGTTCGCTGTCGATGAGGATCCCGAGGAGCTCTCTCAACCTGTGACAGTG
GACTTGGCCAGCCTCTTCCCACGGTATGcactcctttcctccacggaGCT
CACCCTCTCGGCGGGGCAGCCCAAGAGCGAACTGCAACGTCTGAGCTGGA
AGACGACCGAGGGCGCTTTcatgggagggcgggagggagggcatggggga
gggcaggtggtGACGTTGGGCCCGATGGAGATCCGCACTTTCGAGGTGGT
ACTGGGGATGaaagtggaagggaagaaggaggtaggggggcagggagggg
gggagggaaggaaggagggagggaggggacgatggCGGGCAGGACCTGCG
GGTCTTTTGGCGACGATGTAGTTGCCTCCAGATCCATCAAAGCTGGAGTC
CCTGGGCGTCGCTGACGTCCCGACTCTACCGGGATGCCCGCGTCCTGGAG
GTGGAGTGGGAGCTGGGGCCCGTCCCTGTCGACGACggcgtgggcaagga
ggtggtTCTGCGGCTCGGATCGGACCTGCGGAGCGAAGGCACCCTGTGGA
CCGACGCCAACGGCCGGGAATTCCAAGAGAGAAAGCTgaacCATCGCGCC
ACGTGGAACGTCTCGCTCGACGAGCCGGTCGCGGGAAATTACTACCCAGC
CACCATTGCCGCTTACctggaggacggagagggaggcgggaaggagggcg
ggaaggaaggaaaggcgcTTCGTCGGCAATTATCGGTGGTTTTGGACCGC
TCCGAGGTACGTGGctcggggagaaagggaacgGCCCATGTTCCCTGCGG
CAGCCGTGCGCGGGGATTGAGATGGGCCGTCAGAAGGTCTTTATGCACAA
GGGCTTGTGTGATAgtcaggcggggagggtcattcgtcctccttgcctcg
gGTGGCGCTCGACGCGGCCGGCAAATGATTCTTTTAGGCGTGGGTGTCGC
CGTCCTTGCCCAGCGATCATCattcccctgccctccttccctccctccct
ccctccctccctccctcagggagtcgcctccctggcctcggGCCAGCTCG
ACCTCCTCTTGCAACGGCGCCTTCTCTTCGACGACCGGCGAGGCGTCAAC
GAGCCGTTAAATGAAACGGTCGGGGGCATCGAGCACGGGGGAGACTGGGC
CcgacggggggagggtgtccgggtgagagggaagcaCACGTTGATGCTCg
gagcggcagggagggagggaatgagggagcTGCGCGTGCAGATGGACGAG
GCTTTCTTtccagcctccctcttcttctccacgcAGGCCGACCTCctggc
ctcgccctccctcgccgcctccccctccccctccccctctgcccctcctt
cccgtctctcCTTTTTGCCCAGcgagctccctccctcccttgccctcctc
accctgcaATACATCCACCCACGGGAGCGATGGACCACTCGCACTGACAg
ccgcgagggaggggaggagggggggggggaggacggctgtGCTCCTcggt
tcctcctccgccttgcccaCCAGTTCGCTGTCGATGAGGATCCCGAGGAG
CTCTCTCAACCTGTGACAGTGGACTTGGCCAGCCTCTTCCCACGGTATGc
actcctttcctccacggaGCTCACCCTCTCGGCGGGGCAGCCCAAGAGCG
AACTGCAACGTCTGAGCTGGAAGACGACCGAGGGCGCTTTcatgggaggg
cgggagggagggcatgggggagggcaggtggtGACGTTGGGCCCGATGGA
GATCCGCACTTTCGAGGTGGTACTGGGGATGaaagtggaagggaagaagg
aggtaggggggcagggagggggggagggaaggaaggagggagggagggga
cgatggCGGGCAGGACCTGCGGGTCTTTTGGCGACGATGTAGTTGCCTCC
AGATCCATCAAAGCTGGAGTCCCTGGGCGTCGCTGACGTCCCGACTCTAC
CGGGATGCCCGCGTCCTGGAGGTGGAGTGGGAGCTGGGGCCCGTCCCTGT
CGACGACggcgtgggcaaggaggtggtTCTGCGGCTCGGATCGGACCTGC
GGAGCGAAGGCACCCTGTGGACCGACGCCAACGGCCGGGAATTCCAAGAG
AGAAAGCTgaacCATCGCGCCACGTGGAACGTCTCGCTCGACGAGCCGGT
CGCGGGAAATTACTACCCAGCCACCATTGCCGCTTACctggaggacggag
agggaggcgggaaggagggcgggaaggaaggaaaggcgcTTCGTCGGCAA
TTATCGGTGGTTTTGGACCGCTCCGAGGTACGTGGctcggggagaaaggg
aacgGCCCATGTTCCCTGCGGCAGCCGTGCGCGGGGATTGAGATGGGCCG
TCAGAAGGTCTTTATGCACAAGGGCTTGTGTGATAgtcaggcggggaggg
tcattcgtcctccttgcctcggGTGGCGCTCGACGCGGCCGGCAAATGAT
TCTTTTAGGCGTGGGTGTCGCCGTCCTTGCCCAGCGATCATCattcccct
gccctccttccctccctccctccctccctccctccctcagggagtcgcct
ccctggcctcggGCCAGCTCGACCTCCTCTTGCAACGGCGCCTTCTCTTC
GACGACCGGCGAGGCGTCAACGAGCCGTTAAATGAAACGGTCGGGGGCAT
CGAGCACGGGGGAGACTGGGCCcgacggggggagggtgtccgggtgagag
ggaagcaCACGTTGATGCTCggagcggcagggagggagggaatgagggag
cTGCGCGTGCAGATGGACGAGGCTTTCTTtccagcctccctcttcttctc
cacgcAGGCCGACCTCctggcctcgccctccctcgccgcctccccctccc
cctccccctctgcccctccttcccgtctctcCTTTTTGCCCAGcgagctc
cctccctcccttgccctcctcaccctgcaATACATCCACCCACGGGAGCG
ATGGACCACTCGCACTGACAgccgcgagggaggggaggaggggggggggg
aggacggctgtGCTCCTcggttcctcctccgccttgcccaCCAGTTCGCT
GTCGATGAGGATCCCGAGGAGCTCTCTCAACCTGTGACAGTGGACTTGGC
CAGCCTCTTCCCACGGTATGcactcctttcctccacggaGCTCACCCTCT
CGGCGGGGCAGCCCAAGAGCGAACTGCAACGTCTGAGCTGGAAGACGACC
GAGGGCGCTTTcatgggagggcgggagggagggcatgggggagggcaggt
ggtGACGTTGGGCCCGATGGAGATCCGCACTTTCGAGGTGGTACTGGGGA
TGaaagtggaagggaagaaggaggtaggggggcagggagggggggaggga
aggaaggagggagggaggggacgatggCGGGCAGGACCTGCGGGTCTTTT
GGCGACGATGTAGTTGCCTCCAGATCCATCAAAGCTGGAGTCCCTGGGCG
TCGCTGACGTCCCGACTCTACCGGGATGCCCGCGTCCTGGAGGTGGAGTG
GGAGCTGGGGCCCGTCCCTGTCGACGACggcgtgggcaaggaggtggtTC
TGCGGCTCGGATCGGACCTGCGGAGCGAAGGCACCCTGTGGACCGACGCC
AACGGCCGGGAATTCCAAGAGAGAAAGCTgaacCATCGCGCCACGTGGAA
CGTCTCGCTCGACGAGCCGGTCGCGGGAAATTACTACCCAGCCACCATTG
CCGCTTACctggaggacggagagggaggcgggaaggagggcgggaaggaa
ggaaaggcgcTTCGTCGGCAATTATCGGTGGTTTTGGACCGCTCCGAGGT
ACGTGGctcggggagaaagggaacgGCCCATGTTCCCTGCGGCAGCCGTG
CGCGGGGATTGAGATGGGCCGTCAGAAGGTCTTTATGCACAAGGGCTTGT
GTGATAgtcaggcggggagggtcattcgtcctccttgcctcggGTGGCGC
TCGACGCGGCCGGCAAATGATTCTTTTAGGCGTGGGTGTCGCCGTCCTTG
CCCAGCGATCATCattcccctgccctccttccctccctccctccctccct
ccctccctcagggagtcgcctccctggcctcggGCCAGCTCGACCTCCTC
TTGCAACGGCGCCTTCTCTTCGACGACCGGCGAGGCGTCAACGAGCCGTT
AAATGAAACGGTCGGGGGCATCGAGCACGGGGGAGACTGGGCCcgacggg
gggagggtgtccgggtgagagggaagcaCACGTTGATGCTCggagcggca
gggagggagggaatgagggagcTGCGCGTGCAGATGGACGAGGCTTTCTT
tccagcctccctcttcttctccacgcAGGCCGACCTCctggcctcgccct
ccctcgccgcctccccctccccctccccctctgcccctccttcccgtctc
tcCTTTTTGCCCAGcgagctccctccctcccttgccctcctcaccctgca
ATACATCCACCCACGGGAGCGATGGACCACTCGCACTGACAgccgcgagg
gaggggaggagggggggggggaggacggctgtGCTCCTcggttcctcctc
cgccttgcccaCCAGTTCGCTGTCGATGAGGATCCCGAGGAGCTCTCTCA
ACCTGTGACAGTGGACTTGGCCAGCCTCTTCCCACGGTATGcactccttt
cctccacggaGCTCACCCTCTCGGCGGGGCAGCCCAAGAGCGAACTGCAA
CGTCTGAGCTGGAAGACGACCGAGGGCGCTTTcatgggagggcgggaggg
agggcatgggggagggcaggtggtGACGTTGGGCCCGATGGAGATCCGCA
CTTTCGAGGTGGTACTGGGGATGaaagtggaagggaagaaggaggtaggg
gggcagggagggggggagggaaggaaggagggagggaggggacgatggCG
GGCAGGACCTGCGGGTCTTTTGGCGACGATGTAG back to top
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