rna4169, rna4169 (mRNA) Nannochloropsis gaditana

Overview
Namerna4169
Unique Namerna4169
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length845
Alignment locationCM002462.1:1033088..1034305 +

Link to JBrowse

Properties
Property NameValue
Productpre-mrna-splicing factor 18
Orig transcript idgnl|cribi|Naga_101437g2.4763.mrna
Orig protein idgnl|cribi|Naga_101437g2.4763
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1033088..1034305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101437g2gene4012Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4169rna4169-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26514.1cds4159Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4169 ID=rna4169|Name=rna4169|organism=Nannochloropsis gaditana|type=mRNA|length=845bp
AATCCACTCCAACATCGCTTCCTTGCGGCGCCTCGCATGGTGCATGACTG
AGTGACACAGGTGGCAAACGTTGATAGGCAGCTTTGGGTTCAATGTAGGC
GGTATTGCTAACTTGAGTCTAGCCACGTCCCCTGTGTGCGCTTCTCCTTC
CCTCTTACTTAGCTCAGCTTCTCCACGAAAACAGTTTTCACAACCGCGTA
GCCACAGCCGACAATTTTGCTGACTTTGTAACATGGAGGCTTTAAAGGCA
GAGTTGGCCCGGAAAAAACAAGAAAAAATGGCCATGGTGGCGTCTTCAGG
CAGCAATGGCAACGGAGAGGAGGGAGGCAAGAAGGGAGCGACCCAGGCGA
AGTACATTAGGCAAGGCGACGTGATGAAGGCGGAGGCCCAAAGACGCGCC
CTGGAACAGGCAAAGCGGGACAAAGAGAGGGAGGACGCCCGAAGACAACG
AATAGAGGACGAAAGCGCGGCCCAGGGCTCCCTTCAGGCCCGTCTCGGAC
AAAAAGCAGCCGATTGGGCGTTGAACAAAGAGCGGAGAAAAGTGTCGGGC
GAAGGAGCGGGGGGAATGGCGACAGAAGGGAGGAAGGAGGAAGGAAAGGA
GGGGGAGGGAGGGAACAATGCCGGTGGGCAGGGAGAGGGTATCAAGGCGC
TGCGTGAACTGCCGCTCCAAGAAGTCCAGAAACGACTGAGGGCCCTTGGA
AAACCGATCACGTTGTACGCTGAGGATATGGAAGAGCGCCTGGAGCGGTT
GATGGCGGCGGAGGCGGAGGAGCGGGAGAAAGGCGTGGGCACGGAGGATG
ACTTCGGTCTGGCCGGCGGTTTTGAGACGGTGAGGAGAGGCGGGA
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protein sequence of rna4169

>rna4169-protein ID=rna4169-protein|Name=rna4169|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHE
VYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTS
IKRLMRFAQEKRPDVDPSKKFL
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mRNA from alignment at CM002462.1:1033088..1034305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4169 ID=rna4169|Name=rna4169|organism=Nannochloropsis gaditana|type=mRNA|length=1218bp|location=Sequence derived from alignment at CM002462.1:1033088..1034305+ (Nannochloropsis gaditana)
CTCTTTGTCGCAGGGCAAGATGGAGACCAAGACGCAGAAGCAATGCAAAG
ACTACATTCGGCCCTTGTTCAAGCTCTGCAAAGCGAAACAGGTCTaatga
cgagggagggagggagagagggaggggagggagggagggagggagggagg
gagagagggagggaaggggaaaggggcgaaaCTCTATCCTCTGACCTTCA
TACACGCATGCAAACAGGTTCCGGACGGGATTCGCGCCAATTTAATCGAG
ATGGTGGATTTGTGCGAGGCGGGAGAGTTCGTAAAGGTAAACaggcaccc
tcctcctcttttcccccccggcacccCACCCTTCTCCTACTCCTTGCGCC
CAGCTTTGGAGACTCGCCGCGATCTGCGCCCTTTCATAGATGAAGTGCCT
CTtagcccttcctcttttcctccctccgtccctccctccccttctccctc
cccggacCGGGCAGGCGCACGAAGTCTACCTCCGGACGGCCATCGGGAAC
GCCCCATGGCCCATCGGGATCACCATGGTGGGTATCCACGAGCGCACGGG
ACGGGAAAAGATTTCATCGtccaaggtggggagggagggagagagggagg
gggggggtaggaggtggagagggcgCGATGATCTCTTGACAGTGACGGGT
GAGGATAGAAAGGAGATAGAGGGGTACGGAGGttgtcctctccttgtctA
CGTGTTGAAGGTCCCGCCTTCTTTGTATGGAATGGGGTCTTCTTCCATGA
CAATGCCTGCGGGCATGCCGTGTCATCTAGTCTCTTGGGTATTCTTGTAT
TCTGTATGCTGGGAGTTTTACTCACAACTTGACGCTTGGGATGTTTCTCG
TCACGCCCTCAGGTGGCGCACATCATGAATAACGAGATGCAGCGGAAGTA
TCTGACGTCCATAAAGCGCCTCATGCGCTTCGCACAGGAGAAACGCCCGG
ACGTCGATCCCAGCAAAAAGTTTCTTTAAAAGGTCAACTTGGGGTGGGGT
GAAAGAGAATTTCAAGAATACGAGTAGGACATGTTGAGTCATGGTTGGAA
AGAGGTGATTTATCAAGGACGTATATGGCAGGTGCTTGTACAAAAGAAAA
ACACAATTGACGAAAAGATGAAGCACTTCACTTCACGACGGACGACCTTT
GTCTGAACTCGTGATCGATGACCTCCTCACCGGAAACGACACGACTGAGA
AAGTCACGAAAATGACCA
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Coding sequence (CDS) from alignment at CM002462.1:1033088..1034305+

>rna4169 ID=rna4169|Name=rna4169|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002462.1:1033088..1034305+ (Nannochloropsis gaditana)
ATGGAGACCAAGACGCAGAAGCAATGCAAAGACTACATTCGGCCCTTGTT
CAAGCTCTGCAAAGCGAAACAGGTTCCGGACGGGATTCGCGCCAATTTAA
TCGAGATGGTGGATTTGTGCGAGGCGGGAGAGTTCGTAAAGGCGCACGAA
GTCTACCTCCGGACGGCCATCGGGAACGCCCCATGGCCCATCGGGATCAC
CATGGTGGGTATCCACGAGCGCACGGGACGGGAAAAGATTTCATCGtcca
agGTGGCGCACATCATGAATAACGAGATGCAGCGGAAGTATCTGACGTCC
ATAAAGCGCCTCATGCGCTTCGCACAGGAGAAACGCCCGGACGTCGATCC
CAGCAAAAAGTTTCTTTAAATGGAGACCAAGACGCAGAAGCAATGCAAAG
ACTACATTCGGCCCTTGTTCAAGCTCTGCAAAGCGAAACAGGTTCCGGAC
GGGATTCGCGCCAATTTAATCGAGATGGTGGATTTGTGCGAGGCGGGAGA
GTTCGTAAAGGCGCACGAAGTCTACCTCCGGACGGCCATCGGGAACGCCC
CATGGCCCATCGGGATCACCATGGTGGGTATCCACGAGCGCACGGGACGG
GAAAAGATTTCATCGtccaagGTGGCGCACATCATGAATAACGAGATGCA
GCGGAAGTATCTGACGTCCATAAAGCGCCTCATGCGCTTCGCACAGGAGA
AACGCCCGGACGTCGATCCCAGCAAAAAGTTTCTTTAAATGGAGACCAAG
ACGCAGAAGCAATGCAAAGACTACATTCGGCCCTTGTTCAAGCTCTGCAA
AGCGAAACAGGTTCCGGACGGGATTCGCGCCAATTTAATCGAGATGGTGG
ATTTGTGCGAGGCGGGAGAGTTCGTAAAGGCGCACGAAGTCTACCTCCGG
ACGGCCATCGGGAACGCCCCATGGCCCATCGGGATCACCATGGTGGGTAT
CCACGAGCGCACGGGACGGGAAAAGATTTCATCGtccaagGTGGCGCACA
TCATGAATAACGAGATGCAGCGGAAGTATCTGACGTCCATAAAGCGCCTC
ATGCGCTTCGCACAGGAGAAACGCCCGGACGTCGATCCCAGCAAAAAGTT
TCTTTAAATGGAGACCAAGACGCAGAAGCAATGCAAAGACTACATTCGGC
CCTTGTTCAAGCTCTGCAAAGCGAAACAGGTTCCGGACGGGATTCGCGCC
AATTTAATCGAGATGGTGGATTTGTGCGAGGCGGGAGAGTTCGTAAAGGC
GCACGAAGTCTACCTCCGGACGGCCATCGGGAACGCCCCATGGCCCATCG
GGATCACCATGGTGGGTATCCACGAGCGCACGGGACGGGAAAAGATTTCA
TCGtccaagGTGGCGCACATCATGAATAACGAGATGCAGCGGAAGTATCT
GACGTCCATAAAGCGCCTCATGCGCTTCGCACAGGAGAAACGCCCGGACG
TCGATCCCAGCAAAAAGTTTCTTTAA
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Synonyms
Publications