EWM26514.1, cds4159 (CDS) Nannochloropsis gaditana

Overview
NameEWM26514.1
Unique Namecds4159
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1033107..1033178 +
Alignment locationCM002462.1:1033305..1033373 +
Alignment locationCM002462.1:1033552..1033662 +
Alignment locationCM002462.1:1033950..1034066 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26514.1
Productpre-mrna-splicing factor 18
Orig transcript idgnl|cribi|Naga_101437g2.4763.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1033107..1033178 +
CM002462.1supercontigCM002462.1:1033305..1033373 +
CM002462.1supercontigCM002462.1:1033552..1033662 +
CM002462.1supercontigCM002462.1:1033950..1034066 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0009056catabolic process
GO:0008380RNA splicing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
Vocabulary: INTERPRO
TermDefinition
IPR004098Prp18
Homology
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|585108585|gb|EWM26514.1| (pre-mrna-splicing factor 18 [Nannochloropsis gaditana])

HSP 1 Score: 257.299 bits (656), Expect = 5.527e-87
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query:    1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
            METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL
Sbjct:    1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|298705609|emb|CBJ28860.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 192.586 bits (488), Expect = 1.898e-57
Identity = 84/120 (70.00%), Postives = 103/120 (85.83%), Query Frame = 0
Query:    1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
            +ETKTQKQ KDY+RPLFKLCK K +PDGI  NL+ M++  + GEFV+A+++Y+ TAIGNAPWPIG+TMVGIHER+GRE+ISS  VAHIMNNE QRKYL S+KRLM + Q+KRPD+ PSKK
Sbjct:  319 LETKTQKQAKDYMRPLFKLCKQKALPDGILNNLVTMINFMKEGEFVRANDIYILTAIGNAPWPIGLTMVGIHERSGRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKK 438          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|676387895|ref|XP_009037226.1| (hypothetical protein AURANDRAFT_37574 [Aureococcus anophagefferens] >gi|323451972|gb|EGB07847.1| hypothetical protein AURANDRAFT_37574 [Aureococcus anophagefferens])

HSP 1 Score: 186.808 bits (473), Expect = 3.161e-56
Identity = 81/120 (67.50%), Postives = 100/120 (83.33%), Query Frame = 0
Query:    1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
            +ETKT KQCKDYIRPL KLCK +++  G++A L+EM+D CEAGEFVKA++ Y+  AIGN+ WPIG+T VGIH RT RE +    VAH+MNNEMQRKYLTS+KRLM+FAQ++RPDV PSKK
Sbjct:  223 VETKTYKQCKDYIRPLVKLCKKRELNAGLKAALVEMIDFCEAGEFVKANDAYILVAIGNSAWPIGVTSVGIHTRTARENVEQKNVAHVMNNEMQRKYLTSMKRLMKFAQDQRPDVAPSKK 342          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|219119878|ref|XP_002180690.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408163|gb|EEC48098.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 175.252 bits (443), Expect = 8.256e-54
Identity = 79/121 (65.29%), Postives = 98/121 (80.99%), Query Frame = 0
Query:    2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
            ETKT KQCKDYI+PLFKLCK +++ + +  N++++VD C+AGEFV+AH+ Y+  AIG APWPIG+T VGIH RTGR KI S  VAH+MN+E+QRKYLTSIKRLM FAQ KR D+  SKK L
Sbjct:   51 ETKTLKQCKDYIKPLFKLCKNRRLEESLLNNILKIVDDCQAGEFVRAHDTYMDVAIGRAPWPIGVTQVGIHSRTGRAKIESQNVAHVMNSELQRKYLTSIKRLMTFAQTKRTDILHSKKVL 171          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|1210520648|dbj|GAX20497.1| (pre-mRNA-splicing factor 18 [Fistulifera solaris])

HSP 1 Score: 179.874 bits (455), Expect = 1.398e-53
Identity = 79/121 (65.29%), Postives = 101/121 (83.47%), Query Frame = 0
Query:    2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
            ETKT KQCKDYIRPLFKLCK + + + +  +++++V+ C+ GEFVKA++ Y+  AIG A WPIG+TMVGIHERTGR KI+S  VAH+MN+E+QRKYLTS+KRL+ FAQ KRPDVDPSKK +
Sbjct:  216 ETKTLKQCKDYIRPLFKLCKNRTLAEDMMGHILKIVEYCQQGEFVKANDTYIDVAIGRAAWPIGVTMVGIHERTGRSKINSQNVAHVMNSELQRKYLTSVKRLITFAQRKRPDVDPSKKVM 336          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|673042003|ref|XP_008874962.1| (hypothetical protein H310_10370 [Aphanomyces invadans] >gi|574469155|gb|ETV96170.1| hypothetical protein H310_10370 [Aphanomyces invadans])

HSP 1 Score: 179.104 bits (453), Expect = 2.143e-53
Identity = 80/120 (66.67%), Postives = 101/120 (84.17%), Query Frame = 0
Query:    3 TKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
            T+T KQCKDYIRPLF+LCK  +VPD I  NL+++V  CE+GEFV+A++ Y++ AIGNA WPIG+TMVGIHERTGREKI+S+K AH+MNNE+QRKYLTS+KRL+ +AQ    +V PSKK L
Sbjct:  206 TRTMKQCKDYIRPLFRLCKHHEVPDDILRNLLDIVRYCESGEFVQANDAYIKMAIGNAAWPIGVTMVGIHERTGREKINSNKQAHVMNNELQRKYLTSVKRLISYAQSI-SNVAPSKKVL 324          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|1210527751|dbj|GAX13508.1| (pre-mRNA-splicing factor 18 [Fistulifera solaris])

HSP 1 Score: 179.489 bits (454), Expect = 2.442e-53
Identity = 79/121 (65.29%), Postives = 101/121 (83.47%), Query Frame = 0
Query:    2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
            ETKT KQCKDYIRPLFKLCK + + + +  +++++V+ C+ GEFVKA++ Y+  AIG A WPIG+TMVGIHERTGR KI+S  VAH+MN+E+QRKYLTS+KRL+ FAQ KRPDVDPSKK +
Sbjct:  215 ETKTLKQCKDYIRPLFKLCKNRTLAEDMMGHILKIVEYCQQGEFVKANDTYIDVAIGRAAWPIGVTMVGIHERTGRSKINSQNVAHVMNSELQRKYLTSVKRLITFAQRKRPDVDPSKKVI 335          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|669167324|ref|XP_008619224.1| (hypothetical protein SDRG_14845 [Saprolegnia diclina VS20] >gi|530729078|gb|EQC27320.1| hypothetical protein SDRG_14845 [Saprolegnia diclina VS20])

HSP 1 Score: 177.948 bits (450), Expect = 8.977e-53
Identity = 81/118 (68.64%), Postives = 99/118 (83.90%), Query Frame = 0
Query:    3 TKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
            T+T KQCKDYIRPLF+LCK+  VPD I  NL+++V  C+AGEFV A++ Y++ AIGNA WPIG+TMVGIHERTGREKI+S+K AH+MNNE+QRKYLTS+KRL+ FAQ    DV PSKK
Sbjct:  219 TRTMKQCKDYIRPLFRLCKSNTVPDDILKNLVDIVGFCKAGEFVSANDSYIKLAIGNAAWPIGVTMVGIHERTGREKINSNKQAHVMNNELQRKYLTSVKRLITFAQSI-TDVLPSKK 335          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|224006281|ref|XP_002292101.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220972620|gb|EED90952.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 171.785 bits (434), Expect = 1.260e-52
Identity = 76/119 (63.87%), Postives = 95/119 (79.83%), Query Frame = 0
Query:    2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
            ETKT KQCKDYIRPLF++CK +++   +  +L+++V  CE GEFV+AH+ YL  AIG A WPIG+TMVGIH R+GREKI S+ VAH+MN+E  RKYLTS+KRLM + Q KR DVDPSKK
Sbjct:   33 ETKTVKQCKDYIRPLFQMCKRRELEVDMEKHLLKIVTFCEQGEFVRAHDAYLDVAIGRAAWPIGVTMVGIHARSGREKIGSANVAHVMNSEFHRKYLTSVKRLMSYDQRKRVDVDPSKK 151          
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|1072231749|gb|OEU16481.1| (hypothetical protein FRACYDRAFT_163673, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 169.474 bits (428), Expect = 8.407e-52
Identity = 74/119 (62.18%), Postives = 99/119 (83.19%), Query Frame = 0
Query:    2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
            E+KT KQCKDYIRPLFKL K++++ DG++ +L+++V+  + GEFV+AH+ Y+  AIG A WPIG+TMVGIH R+GR KI SS VAH+MN+E QRKYLTS+KRL+ F Q++R DV+PSKK
Sbjct:   32 ESKTLKQCKDYIRPLFKLLKSRKLEDGLQFHLLKIVNFAKEGEFVQAHDSYIDMAIGRAAWPIGVTMVGIHARSGRAKIESSNVAHVMNSEFQRKYLTSVKRLLTFDQKRRTDVNPSKK 150          
The following BLAST results are available for this feature:
BLAST of EWM26514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108585|gb|EWM26514.1|5.527e-87100.00pre-mrna-splicing factor 18 [Nannochloropsis gadit... [more]
gi|298705609|emb|CBJ28860.1|1.898e-5770.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|676387895|ref|XP_009037226.1|3.161e-5667.50hypothetical protein AURANDRAFT_37574 [Aureococcus... [more]
gi|219119878|ref|XP_002180690.1|8.256e-5465.29predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210520648|dbj|GAX20497.1|1.398e-5365.29pre-mRNA-splicing factor 18 [Fistulifera solaris][more]
gi|673042003|ref|XP_008874962.1|2.143e-5366.67hypothetical protein H310_10370 [Aphanomyces invad... [more]
gi|1210527751|dbj|GAX13508.1|2.442e-5365.29pre-mRNA-splicing factor 18 [Fistulifera solaris][more]
gi|669167324|ref|XP_008619224.1|8.977e-5368.64hypothetical protein SDRG_14845 [Saprolegnia dicli... [more]
gi|224006281|ref|XP_002292101.1|1.260e-5263.87predicted protein, partial [Thalassiosira pseudona... [more]
gi|1072231749|gb|OEU16481.1|8.407e-5262.18hypothetical protein FRACYDRAFT_163673, partial [F... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4169rna4169Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications