EWM26514.1, cds4159 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|585108585|gb|EWM26514.1| (pre-mrna-splicing factor 18 [Nannochloropsis gaditana]) HSP 1 Score: 257.299 bits (656), Expect = 5.527e-87 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query: 1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL
Sbjct: 1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|298705609|emb|CBJ28860.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 192.586 bits (488), Expect = 1.898e-57 Identity = 84/120 (70.00%), Postives = 103/120 (85.83%), Query Frame = 0
Query: 1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
+ETKTQKQ KDY+RPLFKLCK K +PDGI NL+ M++ + GEFV+A+++Y+ TAIGNAPWPIG+TMVGIHER+GRE+ISS VAHIMNNE QRKYL S+KRLM + Q+KRPD+ PSKK
Sbjct: 319 LETKTQKQAKDYMRPLFKLCKQKALPDGILNNLVTMINFMKEGEFVRANDIYILTAIGNAPWPIGLTMVGIHERSGRERISSKNVAHIMNNEAQRKYLVSVKRLMTYLQDKRPDIAPSKK 438
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|676387895|ref|XP_009037226.1| (hypothetical protein AURANDRAFT_37574 [Aureococcus anophagefferens] >gi|323451972|gb|EGB07847.1| hypothetical protein AURANDRAFT_37574 [Aureococcus anophagefferens]) HSP 1 Score: 186.808 bits (473), Expect = 3.161e-56 Identity = 81/120 (67.50%), Postives = 100/120 (83.33%), Query Frame = 0
Query: 1 METKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
+ETKT KQCKDYIRPL KLCK +++ G++A L+EM+D CEAGEFVKA++ Y+ AIGN+ WPIG+T VGIH RT RE + VAH+MNNEMQRKYLTS+KRLM+FAQ++RPDV PSKK
Sbjct: 223 VETKTYKQCKDYIRPLVKLCKKRELNAGLKAALVEMIDFCEAGEFVKANDAYILVAIGNSAWPIGVTSVGIHTRTARENVEQKNVAHVMNNEMQRKYLTSMKRLMKFAQDQRPDVAPSKK 342
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|219119878|ref|XP_002180690.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408163|gb|EEC48098.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 175.252 bits (443), Expect = 8.256e-54 Identity = 79/121 (65.29%), Postives = 98/121 (80.99%), Query Frame = 0
Query: 2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
ETKT KQCKDYI+PLFKLCK +++ + + N++++VD C+AGEFV+AH+ Y+ AIG APWPIG+T VGIH RTGR KI S VAH+MN+E+QRKYLTSIKRLM FAQ KR D+ SKK L
Sbjct: 51 ETKTLKQCKDYIKPLFKLCKNRRLEESLLNNILKIVDDCQAGEFVRAHDTYMDVAIGRAPWPIGVTQVGIHSRTGRAKIESQNVAHVMNSELQRKYLTSIKRLMTFAQTKRTDILHSKKVL 171
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|1210520648|dbj|GAX20497.1| (pre-mRNA-splicing factor 18 [Fistulifera solaris]) HSP 1 Score: 179.874 bits (455), Expect = 1.398e-53 Identity = 79/121 (65.29%), Postives = 101/121 (83.47%), Query Frame = 0
Query: 2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
ETKT KQCKDYIRPLFKLCK + + + + +++++V+ C+ GEFVKA++ Y+ AIG A WPIG+TMVGIHERTGR KI+S VAH+MN+E+QRKYLTS+KRL+ FAQ KRPDVDPSKK +
Sbjct: 216 ETKTLKQCKDYIRPLFKLCKNRTLAEDMMGHILKIVEYCQQGEFVKANDTYIDVAIGRAAWPIGVTMVGIHERTGRSKINSQNVAHVMNSELQRKYLTSVKRLITFAQRKRPDVDPSKKVM 336
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|673042003|ref|XP_008874962.1| (hypothetical protein H310_10370 [Aphanomyces invadans] >gi|574469155|gb|ETV96170.1| hypothetical protein H310_10370 [Aphanomyces invadans]) HSP 1 Score: 179.104 bits (453), Expect = 2.143e-53 Identity = 80/120 (66.67%), Postives = 101/120 (84.17%), Query Frame = 0
Query: 3 TKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
T+T KQCKDYIRPLF+LCK +VPD I NL+++V CE+GEFV+A++ Y++ AIGNA WPIG+TMVGIHERTGREKI+S+K AH+MNNE+QRKYLTS+KRL+ +AQ +V PSKK L
Sbjct: 206 TRTMKQCKDYIRPLFRLCKHHEVPDDILRNLLDIVRYCESGEFVQANDAYIKMAIGNAAWPIGVTMVGIHERTGREKINSNKQAHVMNNELQRKYLTSVKRLISYAQSI-SNVAPSKKVL 324
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|1210527751|dbj|GAX13508.1| (pre-mRNA-splicing factor 18 [Fistulifera solaris]) HSP 1 Score: 179.489 bits (454), Expect = 2.442e-53 Identity = 79/121 (65.29%), Postives = 101/121 (83.47%), Query Frame = 0
Query: 2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKKFL 122
ETKT KQCKDYIRPLFKLCK + + + + +++++V+ C+ GEFVKA++ Y+ AIG A WPIG+TMVGIHERTGR KI+S VAH+MN+E+QRKYLTS+KRL+ FAQ KRPDVDPSKK +
Sbjct: 215 ETKTLKQCKDYIRPLFKLCKNRTLAEDMMGHILKIVEYCQQGEFVKANDTYIDVAIGRAAWPIGVTMVGIHERTGRSKINSQNVAHVMNSELQRKYLTSVKRLITFAQRKRPDVDPSKKVI 335
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|669167324|ref|XP_008619224.1| (hypothetical protein SDRG_14845 [Saprolegnia diclina VS20] >gi|530729078|gb|EQC27320.1| hypothetical protein SDRG_14845 [Saprolegnia diclina VS20]) HSP 1 Score: 177.948 bits (450), Expect = 8.977e-53 Identity = 81/118 (68.64%), Postives = 99/118 (83.90%), Query Frame = 0
Query: 3 TKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
T+T KQCKDYIRPLF+LCK+ VPD I NL+++V C+AGEFV A++ Y++ AIGNA WPIG+TMVGIHERTGREKI+S+K AH+MNNE+QRKYLTS+KRL+ FAQ DV PSKK
Sbjct: 219 TRTMKQCKDYIRPLFRLCKSNTVPDDILKNLVDIVGFCKAGEFVSANDSYIKLAIGNAAWPIGVTMVGIHERTGREKINSNKQAHVMNNELQRKYLTSVKRLITFAQSI-TDVLPSKK 335
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|224006281|ref|XP_002292101.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220972620|gb|EED90952.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 171.785 bits (434), Expect = 1.260e-52 Identity = 76/119 (63.87%), Postives = 95/119 (79.83%), Query Frame = 0
Query: 2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
ETKT KQCKDYIRPLF++CK +++ + +L+++V CE GEFV+AH+ YL AIG A WPIG+TMVGIH R+GREKI S+ VAH+MN+E RKYLTS+KRLM + Q KR DVDPSKK
Sbjct: 33 ETKTVKQCKDYIRPLFQMCKRRELEVDMEKHLLKIVTFCEQGEFVRAHDAYLDVAIGRAAWPIGVTMVGIHARSGREKIGSANVAHVMNSEFHRKYLTSVKRLMSYDQRKRVDVDPSKK 151
BLAST of EWM26514.1 vs. NCBI_GenBank
Match: gi|1072231749|gb|OEU16481.1| (hypothetical protein FRACYDRAFT_163673, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 169.474 bits (428), Expect = 8.407e-52 Identity = 74/119 (62.18%), Postives = 99/119 (83.19%), Query Frame = 0
Query: 2 ETKTQKQCKDYIRPLFKLCKAKQVPDGIRANLIEMVDLCEAGEFVKAHEVYLRTAIGNAPWPIGITMVGIHERTGREKISSSKVAHIMNNEMQRKYLTSIKRLMRFAQEKRPDVDPSKK 120
E+KT KQCKDYIRPLFKL K++++ DG++ +L+++V+ + GEFV+AH+ Y+ AIG A WPIG+TMVGIH R+GR KI SS VAH+MN+E QRKYLTS+KRL+ F Q++R DV+PSKK
Sbjct: 32 ESKTLKQCKDYIRPLFKLLKSRKLEDGLQFHLLKIVNFAKEGEFVQAHDSYIDMAIGRAAWPIGVTMVGIHARSGRAKIESSNVAHVMNSEFQRKYLTSVKRLLTFDQKRRTDVNPSKK 150 The following BLAST results are available for this feature:
BLAST of EWM26514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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