rna4165, rna4165 (mRNA) Nannochloropsis gaditana

Overview
Namerna4165
Unique Namerna4165
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1051
Alignment locationCM002462.1:1023201..1025225 +

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Properties
Property NameValue
ProductCell division protein borealin
Orig transcript idgnl|cribi|Naga_100398g4.1306.mrna
Orig protein idgnl|cribi|Naga_100398g4.1306
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1023201..1025225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100398g4gene4008Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4165rna4165-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26517.1cds4155Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4165 ID=rna4165|Name=rna4165|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp
GGCACGGGCCAGCGTTTCGACGCGGTGGTGTCGTCGGAAGTGATTGAGCA
CGTGGCCGCACCCGCTTCCTTTGTCAAATCCTTGGCAGGCATGCTGGTGG
AGACAGAAGAGCATTCTAAGAGCAGGGGAGATGGAAAGGGCGGGCGCGTG
GTCCTCACGACCATCAACCGCACCGTCAAGGCCTACCTGCTTGCCGTTCT
GGGCGCGGAGTACATCGCTCGCATCATTCCCCGAGGCACGCACCAATGGA
AGAAATTCCTTCAGCCTCAAGAAATTGCGCGAATGGGTGCCGACGCAGGA
CTCCGGGTCGAGGACGTGACCGGGCTGATCTACAACCCCATCACAAACAC
GTGGCGGCTCGACAAAAACGACATCGACGTCAACTTTGCCATGTGTTTAA
AGGGAGAGAGGGGCCAAGGCCAAAGAGGGAAGGCCTGAAGCCCAGAAAAT
AGTCGAAGGTATCGTACATGGAAAGCCCTTGTACAGTGGGCGACGGGCGG
GCATTTCGCAATCTCAATGTAAGGAGGCTACGTCCTGTATTGCGTTGGAG
ACAGCTGAACGCGATTGAGGGTATTGCGTGCCATGGAAGTGAACTTCATG
TGAAGATAGAATGAGAGCTACGGCACTCATGCCTATTCTCTTAGGCTGCA
ATCTGTGGGCTCTCACAGAAATTTCTCCACGGCCCCGTCAAAAGCACGCG
CCATGTGGTAGGACTGATGAGTGAGTCTGGCCCTGGAAGAAGGGGAGGAG
CCCCCGTTTTTTGGGGGCGTGGTACGCTCTAGTAGTCAGTGCCACGCGAT
GTCATCCACAATTCATGCCACTACCTGCCCTCACGCCTGGAAACATGCGA
TTCAACCCGGTGTGCGTTCAGCATGAAGGAGAAGTCAGTAGCCAGCCTGA
TGTGACGGGAGGATACGCGCATGCTATGGAGTGAAACTGATATCGAATCA
CGGTGAATGGTACCGAAACGCCAGTGTGACTGGAAAGAAAGGGATGCAAC
CGTAAAGGGGCAGAGTCTTCTGCTTTATATCGATTAGTCTTTCGAAAATG
C
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protein sequence of rna4165

>rna4165-protein ID=rna4165-protein|Name=rna4165|organism=Nannochloropsis gaditana|type=polypeptide|length=307bp
MGSGRAVTGKKRGGGGGSVLEAATLAEGKVGAEGVLNSLSNIKPEELEHI
MVEIEAEMNTRAKRLRVEAEEHALSLQNAFHVEMMKLPKSVRAMSLREFS
DQYGEDIRTVMRLAVEEEASRALSQSHHKQQQRQQLRRNKGPVNGTVVKA
APRNRGRSSRIESGKEVGHGERRSTAGASSSHKPARHGVDGVPGRMTTRG
SSLCGDAGRGEGMGVRTSVNSSGGLVMTLMQTPMEGGSRNTRSGRVRGMA
AQTPRMTMRFDPRLPMTPGIRAPRYGESVLSVNGSPLQVPLPVHPGTSSG
RVETEWV
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mRNA from alignment at CM002462.1:1023201..1025225+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4165 ID=rna4165|Name=rna4165|organism=Nannochloropsis gaditana|type=mRNA|length=2025bp|location=Sequence derived from alignment at CM002462.1:1023201..1025225+ (Nannochloropsis gaditana)
ACAGCGCAGCCGCAGGTTTTCTTTTCATACATTTCTTTGAAGTGTGGAAC ATGGGCAGCGGGCGTGCTGTGACAGGGAAAAagcgtggcgggggaggggg ctcaGTTTTGGAGGCGGCAACCCTGGCTGAGGGCAAAGTAGGGGCAGAGG GTGTATTGAATTCGTTGTCGAACATAAAACCAGAAGAACTGGAGCATATC ATGGTGGAAATTGAAGCAGAGGTGAGCGAAGAAAAGGAATGGAGCCTTGT ACAACTATTTTGCTtcagagaaggaggagaaatgcgAGGAAAGGCTGATG CGAGCATGTAGAAAGCTGCTAACTTGCGTGTGcgttttcccccccctctc ccaacACAGATGAATACTCGCGCCAAGCGTCTTCGTGtggaagcagaaga gcaTGCTCTTTCACTGCAAAATGCCTTTCACGTGGAAATGATGAAATTAC CTAAGTCAGTCCGTGCCATGTCGTTGCGTGAATTCTCGGACCAATATGGC GAGGTAGGTTATCGTGCATAGAGTTCGCGGTTGGCCTGAAAATTGTTTCA AAACCCTCAATGCATAGGCTTGGCCATTGagaaaacaaaaagaagccagg gaggagaaccaTCCGCGCCACTCACGCCCTTGTCCTTTCCCCATCCAGGA TATTCGCACGGTCATGCGtctggccgtggaggaagaggcctccCGCGCGC TTTCCCAGAGCCACCAcaagcagcaacagcggcaaCAGCTCCGAAGAAAT AAAGGACCGGTGAACGGAACGGTGGTGAAGGCGGCGCCACGCAACCGGGG ACGGTCCAGTCGCATTGAAAGCGGGAAAGAAGTGGGACATGGTGAGAGGC GGAGTACCGCCGGCGCATCGTCCTCCCACAAACCTGCCAGGCACGGGGTA GACGGAGTACCCGGGCGGATGACAACGCGCGGGAGCAGCCTCTGCGGAGA tgcgggacgaggggagggcatgggggTGCGCACGAGTGTCAACAGTAGCG GCGGCTTGGTCATGACCCTGATGCAAACtccgatggagggaggaagcagg aatACCCGCTCGGGACGGGTGCGAGGAATGGCGGCGCAAACCCCTCGGAT GACGATGCGGTTCGACCCTCGGCTGCCTATGACCCCGGGTATCAGGGCGC CGCGATACGGAGAGAGTGTTTTGTCCGTTAACGGGTCGCCGCTCCAGGTG CCGCTGCCAGTGCACCCAGGCACGTCATCAGGTAGGGTGGAAACAGAGTG GGTCTGACTCGGGCATGTGGGACTTGATGTGTGGTTAGACTGATGCGACG CACACGACGATGACAGGCGGGCATGCCGACTCCGCCCATACGGCCCAAGG agacgagaaagggagccCGGGCGCCGCCTCGCCGTCCTTGATGATCGAGC TGCCCaacggcgggggagaaagtAAGTTGTTCATGCTTGCAGAAAGAAAG CATGTGCCTTTTTATTCATGCGAGTCCAATGGGCATTTTTAACAGTCTTT TGTCGCCCTCTAACTTGTTCactccccatcctcttccgccttcaCATCCA GCTGTGGACATCTTCAAGAACCCGGCAGCCTTGGCGGATATGGACAGTGA AATGAAGGCAGACGTGGCCAGTAAAATTGAACGCTTACAAACGGGGCTTG CATATGTTTTACAGCACATTGGGGGGGCTTTgctcggagggggaggggga ggagggggagggggaaaagaatgaTTGAAGGGAATAAGAGTAGGCGAAAG AAAACGATAGCAATGCGTCAAAAAACTGCGATCATTACCAACTTAGGCGT CAAAGACCACCACGGTTTCAGCAGGCGCAGGCTTCGCGATAAATGTCTCT CTTTCGAACGGAAACACCGCAGCAACAAGCCATCACCGTGTGAAAGGCCG AAGAAATCGCATAGGGGTTTATTGCTTTTTGCGCCTGTCCACTAAAGCCG TGACGGACCCGCTTGTTGCGTCCTACCTTTACCAAACCGCGTAAAAAAGG CTGAAAATTATGATACTGGATGCCT
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Coding sequence (CDS) from alignment at CM002462.1:1023201..1025225+

>rna4165 ID=rna4165|Name=rna4165|organism=Nannochloropsis gaditana|type=CDS|length=2772bp|location=Sequence derived from alignment at CM002462.1:1023201..1025225+ (Nannochloropsis gaditana)
ATGGGCAGCGGGCGTGCTGTGACAGGGAAAAagcgtggcgggggaggggg
ctcaGTTTTGGAGGCGGCAACCCTGGCTGAGGGCAAAGTAGGGGCAGAGG
GTGTATTGAATTCGTTGTCGAACATAAAACCAGAAGAACTGGAGCATATC
ATGGTGGAAATTGAAGCAGAGATGAATACTCGCGCCAAGCGTCTTCGTGt
ggaagcagaagagcaTGCTCTTTCACTGCAAAATGCCTTTCACGTGGAAA
TGATGAAATTACCTAAGTCAGTCCGTGCCATGTCGTTGCGTGAATTCTCG
GACCAATATGGCGAGGATATTCGCACGGTCATGCGtctggccgtggagga
agaggcctccCGCGCGCTTTCCCAGAGCCACCAcaagcagcaacagcggc
aaCAGCTCCGAAGAAATAAAGGACCGGTGAACGGAACGGTGGTGAAGGCG
GCGCCACGCAACCGGGGACGGTCCAGTCGCATTGAAAGCGGGAAAGAAGT
GGGACATGGTGAGAGGCGGAGTACCGCCGGCGCATCGTCCTCCCACAAAC
CTGCCAGGCACGGGGTAGACGGAGTACCCGGGCGGATGACAACGCGCGGG
AGCAGCCTCTGCGGAGAtgcgggacgaggggagggcatgggggTGCGCAC
GAGTGTCAACAGTAGCGGCGGCTTGGTCATGACCCTGATGCAAACtccga
tggagggaggaagcaggaatACCCGCTCGGGACGGGTGCGAGGAATGGCG
GCGCAAACCCCTCGGATGACGATGCGGTTCGACCCTCGGCTGCCTATGAC
CCCGGGTATCAGGGCGCCGCGATACGGAGAGAGTGTTTTGTCCGTTAACG
GGTCGCCGCTCCAGGTGCCGCTGCCAGTGCACCCAGGCACGTCATCAGGT
AGGGTGGAAACAGAGTGGGTCTGAATGGGCAGCGGGCGTGCTGTGACAGG
GAAAAagcgtggcgggggagggggctcaGTTTTGGAGGCGGCAACCCTGG
CTGAGGGCAAAGTAGGGGCAGAGGGTGTATTGAATTCGTTGTCGAACATA
AAACCAGAAGAACTGGAGCATATCATGGTGGAAATTGAAGCAGAGATGAA
TACTCGCGCCAAGCGTCTTCGTGtggaagcagaagagcaTGCTCTTTCAC
TGCAAAATGCCTTTCACGTGGAAATGATGAAATTACCTAAGTCAGTCCGT
GCCATGTCGTTGCGTGAATTCTCGGACCAATATGGCGAGGATATTCGCAC
GGTCATGCGtctggccgtggaggaagaggcctccCGCGCGCTTTCCCAGA
GCCACCAcaagcagcaacagcggcaaCAGCTCCGAAGAAATAAAGGACCG
GTGAACGGAACGGTGGTGAAGGCGGCGCCACGCAACCGGGGACGGTCCAG
TCGCATTGAAAGCGGGAAAGAAGTGGGACATGGTGAGAGGCGGAGTACCG
CCGGCGCATCGTCCTCCCACAAACCTGCCAGGCACGGGGTAGACGGAGTA
CCCGGGCGGATGACAACGCGCGGGAGCAGCCTCTGCGGAGAtgcgggacg
aggggagggcatgggggTGCGCACGAGTGTCAACAGTAGCGGCGGCTTGG
TCATGACCCTGATGCAAACtccgatggagggaggaagcaggaatACCCGC
TCGGGACGGGTGCGAGGAATGGCGGCGCAAACCCCTCGGATGACGATGCG
GTTCGACCCTCGGCTGCCTATGACCCCGGGTATCAGGGCGCCGCGATACG
GAGAGAGTGTTTTGTCCGTTAACGGGTCGCCGCTCCAGGTGCCGCTGCCA
GTGCACCCAGGCACGTCATCAGGTAGGGTGGAAACAGAGTGGGTCTGAAT
GGGCAGCGGGCGTGCTGTGACAGGGAAAAagcgtggcgggggagggggct
caGTTTTGGAGGCGGCAACCCTGGCTGAGGGCAAAGTAGGGGCAGAGGGT
GTATTGAATTCGTTGTCGAACATAAAACCAGAAGAACTGGAGCATATCAT
GGTGGAAATTGAAGCAGAGATGAATACTCGCGCCAAGCGTCTTCGTGtgg
aagcagaagagcaTGCTCTTTCACTGCAAAATGCCTTTCACGTGGAAATG
ATGAAATTACCTAAGTCAGTCCGTGCCATGTCGTTGCGTGAATTCTCGGA
CCAATATGGCGAGGATATTCGCACGGTCATGCGtctggccgtggaggaag
aggcctccCGCGCGCTTTCCCAGAGCCACCAcaagcagcaacagcggcaa
CAGCTCCGAAGAAATAAAGGACCGGTGAACGGAACGGTGGTGAAGGCGGC
GCCACGCAACCGGGGACGGTCCAGTCGCATTGAAAGCGGGAAAGAAGTGG
GACATGGTGAGAGGCGGAGTACCGCCGGCGCATCGTCCTCCCACAAACCT
GCCAGGCACGGGGTAGACGGAGTACCCGGGCGGATGACAACGCGCGGGAG
CAGCCTCTGCGGAGAtgcgggacgaggggagggcatgggggTGCGCACGA
GTGTCAACAGTAGCGGCGGCTTGGTCATGACCCTGATGCAAACtccgatg
gagggaggaagcaggaatACCCGCTCGGGACGGGTGCGAGGAATGGCGGC
GCAAACCCCTCGGATGACGATGCGGTTCGACCCTCGGCTGCCTATGACCC
CGGGTATCAGGGCGCCGCGATACGGAGAGAGTGTTTTGTCCGTTAACGGG
TCGCCGCTCCAGGTGCCGCTGCCAGTGCACCCAGGCACGTCATCAGGTAG
GGTGGAAACAGAGTGGGTCTGA
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Synonyms
Publications